BAC Information

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BAC

Clone NameB6Ng01-128D19
Chromosome4 (Build37)8 (Build37)
Map Location 12,351,957 - 12,353,07159,664,806 - 59,665,360
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D19.bB6Ng01-128D19.g
ACCDH930145DH930146
length1,114856
definitionDH930145|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D19, 5' end.DH930146|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,351,957 - 12,353,071)(59,664,806 - 59,665,360)
sequence
gaattccttacttgccttctaggtatctcctgagggagctctccctcact
gtgcttccacgtgcctttctgaccttaaatccggattcttaatgctcacc
cttcaactacaaacagcatctctcacaagatccattgtaaatggtacctc
ctgtctggaggctgctagacctctggagaagcaatgaggatgccttatta
agagactgataatcgctttgtccttgtctgctaagggctgtattatttag
ccaagttacctgataattaacacagatctgaccaattaggctaacattag
tgtcacctgatgcttgctctgaatcctgccttctctgtttagtgcaaatt
aaagcctgctaaattaaataaatttgaatgccaatagctacttctcagaa
agccctgcattctgtagatttagtaatgcttccttctcaggtgataagaa
ctcaaaaggacaatgacagtctctcatttagctccccactgggtacaaat
ttacccagtgttagaatgtgcagaaatgaaataaactaaacagcacagag
cacagactccagtccaaagattcttatcccaaggtcattccttacataat
gtaaaatacagtatttggttactcgggtttttaagcatctatttcatatt
tgtagtgttcctgggaccaggcttcctggaaccagggaatacactaaaat
tctagcccactggacttgaccaactttaagttttgattaaaatccactcc
ataaattttagatcgtttaaactgaaacagacaaagcttatttttaatgt
aaaaacacttccatacacttcatttgaaagaagccgaattttgcattggg
gatcactcttacatgtattctttcttttttaatattagaaatattatccc
cacccctaccctcagtttacttagcccaacagccactgttccgaactcac
acggaccttgaccagttaacttctctctcatttctttcaacctatatatt
acagaaggggtgcaaagccatgtggcttcatccttcaaagccaggatggt
ttcctattaccaacaaatgcttgtctaaaaaatgatagttcctaatattg
gctcaaattttgca
gaattcctgatctttccataacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttttggat
tttcttcaggatctgttgttatgtctccctttttcatttctgattttgtt
aattaggattttgtccctgtgccctttagtgagtctagctaagggtttat
ctatcttttttgattttctcaagaacaactcctcgttggtttatttcttt
gatagttcttcttgttcccacttggatgattccacccctgagtttgatat
ttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12351957_12353071
seq2: B6Ng01-128D19.b_49_1162 (reverse)

seq1  TGCAAAATTTGGAGCCAATAGTGAGGAACTATACATTTTTTTAGACAAGC  50
      |||||||||| ||||||||| | ||||||||| || ||||||||||||||
seq2  TGCAAAATTT-GAGCCAATA-TTAGGAACTAT-CA-TTTTTTAGACAAGC  46

seq1  ATTTTGTTGGTAATAGGGAAACCATTCTGGCTTTGAAGTATTGAAGCCAC  100
      | ||||||||||||| ||||||||| |||||||||||| | |||||||||
seq2  A-TTTGTTGGTAATA-GGAAACCATCCTGGCTTTGAAGGA-TGAAGCCAC  93

seq1  AT-GCTTTGCACCCCTCTGGTAATATATAGGTTGAAAGAAATGAGAGAGA  149
      || |||||||||||||   |||||||||||||||||||||||||||||||
seq2  ATGGCTTTGCACCCCTTCTGTAATATATAGGTTGAAAGAAATGAGAGAGA  143

seq1  AGTTAACTGGTC-AGGTCCGTGTGAG-TCGGAACAGTGGCTGTTGGGCTA  197
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  AGTTAACTGGTCAAGGTCCGTGTGAGTTCGGAACAGTGGCTGTTGGGCTA  193

seq1  AGTAAACTGAGGGTAGGGGTGGGGATAATATTTCTAATATT-AAAAAGAA  246
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTAAACTGAGGGTAGGGGTGGGGATAATATTTCTAATATTAAAAAAGAA  243

seq1  AGAATACATGTAAGAGTGAT-CCCAATGCAAAATTCGGCTTCTTTCAAAT  295
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAATACATGTAAGAGTGATCCCCAATGCAAAATTCGGCTTCTTTCAAAT  293

seq1  GAAGTGTATGGAAGTGTTTTTACATTAAAAATTAGCTTTGTCTG-TTCAG  344
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GAAGTGTATGGAAGTGTTTTTACATTAAAAATAAGCTTTGTCTGTTTCAG  343

seq1  TTTAAACGATCTAAAATTTATGGAGTGGATTTTAATCAAAACTTAAAGTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACGATCTAAAATTTATGGAGTGGATTTTAATCAAAACTTAAAGTT  393

seq1  GGTCAAGTCCAGTGGGCTAGAATTTTAGTGTATTCCCTGGTTCCAGGAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTCCAGTGGGCTAGAATTTTAGTGTATTCCCTGGTTCCAGGAAG  443

seq1  CCTGGTCCCAGGAACACTACAAATATGAAATAGATGCTTAAAAACCCGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCAGGAACACTACAAATATGAAATAGATGCTTAAAAACCCGAG  493

seq1  TAACCAAATACTGTATTTTACATTATGTAAGGAATGACCTTGGGATAAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAATACTGTATTTTACATTATGTAAGGAATGACCTTGGGATAAGA  543

seq1  ATCTTTGGACTGGAGTCTGTGCTCTGTGCTGTTTAGTTTATTTCATTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGACTGGAGTCTGTGCTCTGTGCTGTTTAGTTTATTTCATTTCT  593

seq1  GCACATTCTAACACTGGGTAAATTTGTACCCAGTGGGGAGCTAAATGAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTCTAACACTGGGTAAATTTGTACCCAGTGGGGAGCTAAATGAGA  643

seq1  GACTGTCATTGTCCTTTTGAGTTCTTATCACCTGAGAAGGAAGCATTACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCATTGTCCTTTTGAGTTCTTATCACCTGAGAAGGAAGCATTACT  693

seq1  AAATCTACAGAATGCAGGGCTTTCTGAGAAGTAGCTATTGGCATTCAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTACAGAATGCAGGGCTTTCTGAGAAGTAGCTATTGGCATTCAAAT  743

seq1  TTATTTAATTTAGCAGGCTTTAATTTGCACTAAACAGAGAAGGCAGGATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATTTAGCAGGCTTTAATTTGCACTAAACAGAGAAGGCAGGATT  793

seq1  CAGAGCAAGCATCAGGTGACACTAATGTTAGCCTAATTGGTCAGATCTGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAGCATCAGGTGACACTAATGTTAGCCTAATTGGTCAGATCTGT  843

seq1  GTTAATTATCAGGTAACTTGGCTAAATAATACAGCCCTTAGCAGACAAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTATCAGGTAACTTGGCTAAATAATACAGCCCTTAGCAGACAAGG  893

seq1  ACAAAGCGATTATCAGTCTCTTAATAAGGCATCCTCATTGCTTCTCCAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCGATTATCAGTCTCTTAATAAGGCATCCTCATTGCTTCTCCAGA  943

seq1  GGTCTAGCAGCCTCCAGACAGGAGGTACCATTTACAATGGATCTTGTGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGCAGCCTCCAGACAGGAGGTACCATTTACAATGGATCTTGTGAG  993

seq1  AGATGCTGTTTGTAGTTGAAGGGTGAGCATTAAGAATCCGGATTTAAGGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTTTGTAGTTGAAGGGTGAGCATTAAGAATCCGGATTTAAGGT  1043

seq1  CAGAAAGGCACGTGGAAGCACAGTGAGGGAGAGCTCCCTCAGGAGATACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCACGTGGAAGCACAGTGAGGGAGAGCTCCCTCAGGAGATACC  1093

seq1  TAGAAGGCAAGTAAGGAATTC  1115
      |||||||||||||||||||||
seq2  TAGAAGGCAAGTAAGGAATTC  1114

seq1: chr8_59664806_59665360
seq2: B6Ng01-128D19.g_370_924 (reverse)

seq1  CAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAG  50
      |||||||| |||||||||||||||| ||||| |||||||| |||||||||
seq2  CAGGAAAT-ATCAAACTCAGGGGTGGAATCATCCAAGTGGGAACAAGAAG  49

seq1  AACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATC-  99
      ||||| |||||||| ||| | ||||||||||| |||| ||||||||||| 
seq2  AACTA-TCAAAGAAATAAACCAACGAGGAGTT-GTTC-TTGAGAAAATCA  96

seq1  AACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAA  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAA  146

seq1  AATCCTAATTAACAAAATCAGAAATG-AAAAGGGAGACATAACAACAGAT  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATCCTAATTAACAAAATCAGAAATGAAAAAGGGAGACATAACAACAGAT  196

seq1  CCTGAAG-AAATCC-AAAACACCATCAGATCCTTCTACAAAAGGCTATAC  246
      ||||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGAAGAAAATCCAAAAACACCATCAGATCCTTCTACAAAAGGCTATAC  246

seq1  TCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATA  296

seq1  CCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCA  346

seq1  TATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAA  396
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TATCCCCTAAAGAAATAGAAGCAGTTATAAATAGTCTCCCAGCCAAAAAA  396

seq1  AGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGA  446

seq1  AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAG  496

seq1  GTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAA  546

seq1  CCACAGAAA  555
      |||||||||
seq2  CCACAGAAA  555