BAC Information

Click to search

BAC

Clone NameB6Ng01-129B11
Chromosome8 (Build37)
Map Location 111,749,384 - 111,917,212
singlet/doubletdoublet
Overlap gene4922502B01Rik, Gm1943, LOC100042829
Upstream geneAtbf1
Downstream genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129B11.bB6Ng01-129B11.g
ACCDH930770DH930771
length1,117998
definitionDH930770|Mus musculus domesticus DNA, BAC clone: B6Ng01-129B11, 5' end.DH930771|Mus musculus domesticus DNA, BAC clone: B6Ng01-129B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,749,384 - 111,750,494)(111,916,191 - 111,917,212)
sequence
gaattcctttaaatgaagtctctagtctaattctcagagaaacacatgag
gactatatttttctcccatcttactagaaaaccagttgaaattttacaaa
ggtagcttacatttaaatctgactctaaacccagtagagtaacttctgag
atttaaagttgaaactagggcattgtctcttgaacagtgtttaccaagaa
catactctactccaggcacagctctgggcgtcagaggatacagcagtaaa
taaaatggccaaactctctacagggtgggcattatccaagcaagaaacag
aaaggagtaattacagaagtaagtcatagtccagctaggcaagtacttgg
gacaaaaagaaatcagcaaggaagtgttaaaaaaaagacttctaaagtgg
agatgttgtcaggaaaagcaacattgaaaaggttaaggacatgaagtaca
aaccatcagacagtctagtggcacaacagaaagaaagtagggcacaagaa
agctccagctcctaggggggttgtgcatggcaggtccaaggaggccagca
tgtgagagttgagtatgtaaaggagagagcagtggcaagccagatagaaa
gcctgatcaaggtcactctgagtgtgggaggctgacggagttaagtagta
gcattttgatgagaagatagatagcaggtagatagatagatacatagata
gatacacagaggatttagatagatagataggtagatagacagacagacag
atagacagacagggaaggaaaataaatagatgaacccacacagtgagtag
tctggggtgggtaaaaatgaggagactagttagaaaactactgcaagaag
atggacaaacccttgacagtagcataaggaaaacacttcttgttacagta
tgtattttgagtgtcatttgtattaacttttcttaaattacaccttcctc
atcattttgtcacctgtgagtatttagaataatgcttgagatccccttat
gtccacatttatttcgtctttgttaatattttttaggatcaaatgtattt
gaaagtaaacagtcacattctgaaatgttcccttccaacatcttctgtgg
ccagtaactcacacact
gaattcacaattgcccccttggtttagcaggcagcaaataacactcaatt
ctgctcatttatggggaaggggtggggcttttctttttctaactactgtg
ataaatgtggggatcactgaggtcgacaatcctcacgaaattcataactt
ataaaggcaagaaatccatgaacaaataaatgacaacgtgaggacataag
tgccactcggagatatgttcagtatcaccgacagatggaggatgagaacc
gcatgaccctgatgaatttacagaggccaggagaagttaagtggatggtg
tgattccatggcggtgagtgggtgcgccctgagtgtggtcaaacagaagg
gtaaacctgtctggagtggagccttgtggcacagacctgcaatttcagat
actcagagagcttggcaggaagactgcaaatccaaggcttgcttgggctc
cagagaaaattcccggctggtctagacagctcatggcatctcatctcaaa
gtaaaaggtgaacatggtccggggacacaggccagtgacagagcatctgc
ttatcatgtggaatgccccagctccatccgcagcactacacacacaagaa
atgaagccaaccatcaagtaagggctgttttctccatactgaagaacgct
aaatggtccttataatcttcttcctttggtatcatcacactggagtctgg
aaaacaaaggaactcctgcagaccatcttcacaggctgagagtgtagctc
aaggtagagtgcccacctccttttgtctcaaaccgcagttcagtacccgg
cacagggtaggtaggaacctgagacttcccacaggatttacacagtgctc
tatttttcaatgaaaaagcttttgcatctggaggctgtagcatttctggg
ctcagtttcactttttaaagatctaattataatctcaaagatccaggaaa
taatccagcaaatgtccagatgcatgtgcctgcgtataaattccgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111749384_111750494
seq2: B6Ng01-129B11.b_47_1163

seq1  GAATTCCTTTAAATGAAGTCTCTAGTCTAATTCTCAGAGAAACACATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAAATGAAGTCTCTAGTCTAATTCTCAGAGAAACACATGAG  50

seq1  GACTATATTTTTCTCCCATCTTACTAGAAAACCAGTTGAAATTTTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATTTTTCTCCCATCTTACTAGAAAACCAGTTGAAATTTTACAAA  100

seq1  GGTAGCTTACATTTAAATCTGACTCTAAACCCAGTAGAGTAACTTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTTACATTTAAATCTGACTCTAAACCCAGTAGAGTAACTTCTGAG  150

seq1  ATTTAAAGTTGAAACTAGGGCATTGTCTCTTGAACAGTGTTTACCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTTGAAACTAGGGCATTGTCTCTTGAACAGTGTTTACCAAGAA  200

seq1  CATACTCTACTCCAGGCACAGCTCTGGGCGTCAGAGGATACAGCAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCTACTCCAGGCACAGCTCTGGGCGTCAGAGGATACAGCAGTAAA  250

seq1  TAAAATGGCCAAACTCTCTACAGGGTGGGCATTATCCAAGCAAGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGCCAAACTCTCTACAGGGTGGGCATTATCCAAGCAAGAAACAG  300

seq1  AAAGGAGTAATTACAGAAGTAAGTCATAGTCCAGCTAGGCAAGTACTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTAATTACAGAAGTAAGTCATAGTCCAGCTAGGCAAGTACTTGG  350

seq1  GACAAAAAGAAATCAGCAAGGAAGTGTTAAAAAAAAGACTTCTAAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAAGAAATCAGCAAGGAAGTGTTAAAAAAAAGACTTCTAAAGTGG  400

seq1  AGATGTTGTCAGGAAAAGCAACATTGAAAAGGTTAAGGACATGAAGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGTCAGGAAAAGCAACATTGAAAAGGTTAAGGACATGAAGTACA  450

seq1  AACCATCAGACAGTCTAGTGGCACAACAGAAAGAAAGTAGGGCACAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAGACAGTCTAGTGGCACAACAGAAAGAAAGTAGGGCACAAGAA  500

seq1  AGCTCCAGCTCCTAGGGGGGTTGTGCATGGCAGGTCCAAGGAGGCCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAGCTCCTAGGGGGGTTGTGCATGGCAGGTCCAAGGAGGCCAGCA  550

seq1  TGTGAGAGTTGAGTATGTAAAGGAGAGAGCAGTGGCAAGCCAGATAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGTTGAGTATGTAAAGGAGAGAGCAGTGGCAAGCCAGATAGAAA  600

seq1  GCCTGATCAAGGTCACTCTGAGTGTGGGAGGCTGACGGAGTTAAGTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATCAAGGTCACTCTGAGTGTGGGAGGCTGACGGAGTTAAGTAGTA  650

seq1  GCATTTTGATGAGAAGATAGATAGCAGGTAGATAGATAGATACATAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGATGAGAAGATAGATAGCAGGTAGATAGATAGATACATAGATA  700

seq1  GATACACAGAGGATTTAGATAGATAGATAGGTAGATAGACAGACAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACAGAGGATTTAGATAGATAGATAGGTAGATAGACAGACAGACAG  750

seq1  ATAGACAGACAGGGAAGGAAAATAAATAGATGAACCCACACAGTGAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAGACAGGGAAGGAAAATAAATAGATGAACCCACACAGTGAGTAG  800

seq1  TCTGGGGTGGGTAAAAATGAGGAGACTAGTTAGAAAACTACTGCAAGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTGGGTAAAAATGAGGAGACTAGTTAGAAAACTACTGCAAGAAG  850

seq1  ATGGACAAACCC-TGACAGTAGCATAAGGAAAACACTTCTTGTTACAGTA  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAACCCTTGACAGTAGCATAAGGAAAACACTTCTTGTTACAGTA  900

seq1  TGTATTTTGAGTGTCATTTGTATTAAC-TTTCTTAAATTACACCTTCCTC  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTATTTTGAGTGTCATTTGTATTAACTTTTCTTAAATTACACCTTCCTC  950

seq1  ATCA-TCTGTCACCTGTGAGTAATTTAG-ATAATGCTTGAGATCCCC-TA  995
      |||| | |||||||||||||| |||||| |||||||||||||||||| ||
seq2  ATCATTTTGTCACCTGTGAGT-ATTTAGAATAATGCTTGAGATCCCCTTA  999

seq1  TGT-CACATTTATTTCCGTCTTTGTTAATATTTTATA-GATCAAATGTAT  1043
      ||| ||||||||||| |||||||||||||||||| || ||||||||||||
seq2  TGTCCACATTTATTT-CGTCTTTGTTAATATTTTTTAGGATCAAATGTAT  1048

seq1  TTGAAAGTAAACAGTCACA-TCTGAAATGTTCTCTTCTACCATCTTCTGT  1092
      ||||||||||||||||||| |||||||||||| |||| | ||||||||||
seq2  TTGAAAGTAAACAGTCACATTCTGAAATGTTCCCTTCCAACATCTTCTGT  1098

seq1  GAGCAGTTACTCACACACT  1111
      |  |||| |||||||||||
seq2  GGCCAGTAACTCACACACT  1117

seq1: chr8_111916191_111917212
seq2: B6Ng01-129B11.g_69_1066 (reverse)

seq1  TGACGGAATTTAATCAGCAAGGCACATTGCATCCTGCACCATTTTGCTTG  50
      ||||||||||| ||  || ||||||| ||||| ||| ||   ||||||  
seq2  TGACGGAATTT-ATACGC-AGGCACA-TGCAT-CTGGAC--ATTTGCT--  42

seq1  GGTTTAATTTTTCCTGTGATTCTTTTGGAGATTATAATAGAATCTTTATA  100
      || |||   ||||||| || |||||  |||||||||||   |||||  ||
seq2  GGATTA---TTTCCTG-GA-TCTTT--GAGATTATAATTAGATCTT--TA  83

seq1  AAAAGTGAAACTGAAGCTCAGAAATGCTAACAAGCCTTCCCAGGATGC-A  149
      ||||||||||||| ||| |||||||||||   |||||  ||| ||||| |
seq2  AAAAGTGAAACTG-AGCCCAGAAATGCTA--CAGCCT--CCA-GATGCAA  127

seq1  AAGCTTTTTCATTGAAATATTAGAAGCACTGTGTAAATCTTGTGGGAAGT  199
      ||||||||||||||||| | ||| ||||||||||||||| ||||||||||
seq2  AAGCTTTTTCATTGAAA-AATAG-AGCACTGTGTAAATCCTGTGGGAAGT  175

seq1  CTCAGGTTCCTACCTACCCTGTGCCGGGTACTGAACCTGCGGTTTGAGAC  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCAGGTTCCTACCTACCCTGTGCCGGGTACTGAA-CTGCGGTTTGAGAC  224

seq1  -ATAGGAGGTGGGCACTCTACCTTGAGCTACACTCTCAGCCTGTGAAGAT  298
       | |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGTGGGCACTCTACCTTGAGCTACACTCTCAGCCTGTGAAGAT  274

seq1  GGTCTGCAGGAGTTCCTTTGTTTTCCAGACTCCAGTGTGATGATACCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCAGGAGTTCCTTTGTTTTCCAGACTCCAGTGTGATGATACCAAA  324

seq1  GGAAGAAGATTATAAGGACCATTTAGCGTTCTTCAGTATGGAGAAAACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGATTATAAGGACCATTTAGCGTTCTTCAGTATGGAGAAAACAG  374

seq1  CCCTTACTTGATGGTTGGCTTCATTTCTTGTGTGTGTAGTGCTGCGGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTTGATGGTTGGCTTCATTTCTTGTGTGTGTAGTGCTGCGGATG  424

seq1  GAGCTGGGGCATTCCACATGATAAGCAGATGCTCTGTCACTGGCCTGTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGGGCATTCCACATGATAAGCAGATGCTCTGTCACTGGCCTGTGT  474

seq1  CCCCGGACCATGTTCACCTTTTACTTTGAGATGAGATGCCATGAGCTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGACCATGTTCACCTTTTACTTTGAGATGAGATGCCATGAGCTGTC  524

seq1  TAGACCAGCCGGGAATTTTCTCTGGAGCCCAAGCAAGCCTTGGATTTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGCCGGGAATTTTCTCTGGAGCCCAAGCAAGCCTTGGATTTGCA  574

seq1  GTCTTCCTGCCAAGCTCTCTGAGTATCTGAAATTGCAGGTCTGTGCCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTGCCAAGCTCTCTGAGTATCTGAAATTGCAGGTCTGTGCCACA  624

seq1  AGGCTCCACTCCAGACAGGTTTACCCTTCTGTTTGACCACACTCAGGGCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCACTCCAGACAGGTTTACCCTTCTGTTTGACCACACTCAGGGCG  674

seq1  CACCCACTCACCGCCATGGAATCACACCATCCACTTAACTTCTCCTGGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCACCGCCATGGAATCACACCATCCACTTAACTTCTCCTGGCC  724

seq1  TCTGTAAATTCATCAGGGTCATGCGGTTCTCATCCTCCATCTGTCGGTGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAATTCATCAGGGTCATGCGGTTCTCATCCTCCATCTGTCGGTGA  774

seq1  TACTGAACATATCTCCGAGTGGCACTTATGTCCTCACGTTGTCATTTATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACATATCTCCGAGTGGCACTTATGTCCTCACGTTGTCATTTATT  824

seq1  TGTTCATGGATTTCTTGCCTTTATAAGTTATGAATTTCGTGAGGATTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGGATTTCTTGCCTTTATAAGTTATGAATTTCGTGAGGATTGTC  874

seq1  GACCTCAGTGATCCCCACATTTATCACAGTAGTTAGAAAAAGAAAAGCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGTGATCCCCACATTTATCACAGTAGTTAGAAAAAGAAAAGCCC  924

seq1  CACCCCTTCCCCATAAATGAGCAGAATTGAGTGTTATTTGCTGCCTGCTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTCCCCATAAATGAGCAGAATTGAGTGTTATTTGCTGCCTGCTA  974

seq1  AACCAAGGGGGCAATTGTGAATTC  1022
      ||||||||||||||||||||||||
seq2  AACCAAGGGGGCAATTGTGAATTC  998