BAC Information

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BAC

Clone NameB6Ng01-129I22
Chromosome8 (Build37)
Map Location 107,538,594 - 107,744,546
singlet/doubletdoublet
Overlap geneEG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb
Upstream geneLOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058
Downstream geneD230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I22.bB6Ng01-129I22.g
ACCDH931108DH931109
length1,1481,098
definitionDH931108|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I22, 5' end.DH931109|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,538,594 - 107,539,761)(107,743,449 - 107,744,546)
sequence
gaattctgggccggacttccatggctcctcatctcaagctcacagcactt
ttccatcatacgggggaatttctgggagtattttcagaagaactttataa
tattaagagagtacaaggactctgccagcttcttagttcagggtttggca
gtgattaggctctttttagtgttatttaacaaccaaaagagagtctctaa
aagagtttttcattgactcccagaacctctaagatccccaactaacagca
ccagaaaggaggcccttaaatagaacaactccatgcaaacatcacattcc
actgtcactgtgccctatggggctagatgtcattggacaagaaatgcata
tacatgtatgtcagatacttttcttattgctgggacaaaattcatggcag
aagcaatttaatgaggaagagtttattttggtatataattcaaaggtaac
tcccatcatggtgtgaaagtattggaagcaggaatttggggtggcttgtc
acattgtggcctgactcacaaggaagcagagagacagacagagacagaga
cagagtcagagacagagacaaaaagagagattgatactcaacttactatc
tcttcttattcagtttagggacccagccaatggaatagtactgtctgctt
ctaggccacgtcttccaatctcaagtgacctaacctagaaacccacaaac
aaacaggtctagaggttggtttccataatgattctaaatctcatcaagtt
gacattcaagatgtcacaatgtacttctaatcagagattatggaagaaat
gaaggcctcaagagtctggacttggaagtagggagggtctctgtaccctg
tgggaaactagcctccactcattcatgaactccagtgtgacatagctgtc
ctgttgcagactggttggttaaaggagacatggtcattgtcacacctgca
ataaaaggttgtcaaaagattcctaaaggtcattattcctcaccttcaga
ggtgtagatccagccctccatacctggattttactggaagtctgtgctca
tttagctttctccagagccctaggtctatacttgatggtcagagtagaga
ggacatttgtgtagcaagcatcgaaaagacatgcgtggaattttgaaa
gaattccaggacagccagggctatacagagaaaccctgtttcgaaaaacc
aaaaaaaaaaaaaaaaaaaaaaaaggtacaattttttaaaaattgcagtg
cctatacatttcccccttaacactgagtctccatacccaccaggccacta
tatctaaaagatcactttgatctttaaccaaaaaatttctcaaacctcct
aatctgttggccacttcttgtcctggtccaaatgtcttccatttgattga
cataatacattgagcactgctcctgtctcacccatgctgtagcccttatc
tgatgctctttcaaacctgctaagctctgaccagccggctatgtgcattc
agtatcttctctagttgattgtagctttcggcttggaagtctcctcaggt
tgattgactctaactacccagaccagcacagacagtgcaactgccaaggc
ttcctatataatttaaaggttgctactacattggatcaattttgggcata
gactaggttccaggaggtcagagacaatgtctttttagggcagtcacttt
atattgtttcttctaaactatcctcaatgattaagtgtcctgcttgcaca
tgtattatatgtaatactgtgtatgcctagtgcccatggagttcagaaaa
gattgtttctagccactgctagctggaagtaggatggttattgagacacc
atgtgaaagctgagaaccaaaccttgatccactgcaggagcaagtacttt
taactgctgagctatctttccatcctcagatactttaatactttttaaaa
ccattaatatagtttcaacattttcttgagctctttccatttttataatt
cattactgatttataatctcgctaacattgatagcagcaatattaagcaa
ttttaaattccttcgtagctagctactttaaatattgtcattttaattta
atagtgtaggtcaagctcccccccccccccccaaaggggaatgcttgttg
gcattgtctgaaactctggtttccttttatcaggagtctatttagccacc
aggggcctctctttaatggactgccctaaaggtcacctacctcaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_107538594_107539761
seq2: B6Ng01-129I22.b_43_1190

seq1  GAATTCTGGGCCGGACTTCCATGGCTCCTCATCTCAAGCTCACAGCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCCGGACTTCCATGGCTCCTCATCTCAAGCTCACAGCACTT  50

seq1  TTCCATCATACGGGGGAATTTCTGGGAGTATTTTCAGAAGAACTTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCATACGGGGGAATTTCTGGGAGTATTTTCAGAAGAACTTTATAA  100

seq1  TATTAAGAGAGTACAAGGACTCTGCCAGCTTCTTAGTTCAGGGTTTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGAGAGTACAAGGACTCTGCCAGCTTCTTAGTTCAGGGTTTGGCA  150

seq1  GTGATTAGGCTCTTTTTAGTGTTATTTAACAACCAAAAGAGAGTCTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTAGGCTCTTTTTAGTGTTATTTAACAACCAAAAGAGAGTCTCTAA  200

seq1  AAGAGTTTTTCATTGACTCCCAGAACCTCTAAGATCCCCAACTAACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTTTCATTGACTCCCAGAACCTCTAAGATCCCCAACTAACAGCA  250

seq1  CCAGAAAGGAGGCCCTTAAATAGAACAACTCCATGCAAACATCACATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGGAGGCCCTTAAATAGAACAACTCCATGCAAACATCACATTCC  300

seq1  ACTGTCACTGTGCCCTATGGGGCTAGATGTCATTGGACAAGAAATGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACTGTGCCCTATGGGGCTAGATGTCATTGGACAAGAAATGCATA  350

seq1  TACATGTATGTCAGATACTTTTCTTATTGCTGGGACAAAATTCATGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATGTCAGATACTTTTCTTATTGCTGGGACAAAATTCATGGCAG  400

seq1  AAGCAATTTAATGAGGAAGAGTTTATTTTGGTATATAATTCAAAGGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATTTAATGAGGAAGAGTTTATTTTGGTATATAATTCAAAGGTAAC  450

seq1  TCCCATCATGGTGTGAAAGTATTGGAAGCAGGAATTTGGGGTGGCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCATGGTGTGAAAGTATTGGAAGCAGGAATTTGGGGTGGCTTGTC  500

seq1  ACATTGTGGCCTGACTCACAAGGAAGCAGAGAGACAGACAGAGACAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGGCCTGACTCACAAGGAAGCAGAGAGACAGACAGAGACAGAGA  550

seq1  CAGAGTCAGAGACAGAGACAAAAAGAGAGATTGATACTCAACTTACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCAGAGACAGAGACAAAAAGAGAGATTGATACTCAACTTACTATC  600

seq1  TCTTCTTATTCAGTTTAGGGACCCAGCCAATGGAATAGTACTGTCTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTATTCAGTTTAGGGACCCAGCCAATGGAATAGTACTGTCTGCTT  650

seq1  CTAGGCCACGTCTTCCAATCTCAAGTGACCTAACCTAGAAACCCACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCACGTCTTCCAATCTCAAGTGACCTAACCTAGAAACCCACAAAC  700

seq1  AAACAGGTCTAGAGGTTGGTTTCCATAATGATTCTAAATCTCATCAAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTCTAGAGGTTGGTTTCCATAATGATTCTAAATCTCATCAAGTT  750

seq1  GACATTCAAGATGTCACAATGTACTTCTAATCAGAGATTATGGAAGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCAAGATGTCACAATGTACTTCTAATCAGAGATTATGGAAGAAAT  800

seq1  GAAGGCCTCAAGAGTCTGGACTTGGAAGTAGGGAGGGTCTCTGTACCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTCAAGAGTCTGGACTTGGAAGTAGGGAGGGTCTCTGTACCCTG  850

seq1  TGGGAAACTAGCCTCCACTCATTCATGAACTCCAGTGTGACATAGCTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAACTAGCCTCCACTCATTCATGAACTCCAGTGTGACATAGCTGTC  900

seq1  CTGTTGCAGAACTGGTTGGTTAAAAGGAGACATGGTCATTGTCAACACCT  950
      ||||||||| ||||||||||| ||||||||||||||||||||| ||||||
seq2  CTGTTGCAG-ACTGGTTGGTT-AAAGGAGACATGGTCATTGTC-ACACCT  947

seq1  GCAATAAAAGGTTGTCAAAAGGATTCCTAAAGGTCATTATTCCCCACCTT  1000
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  GCAATAAAAGGTTGTCAAAA-GATTCCTAAAGGTCATTATTCCTCACCTT  996

seq1  CAGGAGGTGTAGGATCCAAGCCCCTCCATAACCTGGATTTTACTGGAAGT  1050
      || |||||||| ||||||   |||||||| ||||||||||||||||||||
seq2  CA-GAGGTGTA-GATCCA--GCCCTCCAT-ACCTGGATTTTACTGGAAGT  1041

seq1  CTGTGCTCCATATTAGC-TTCTCCAGAGCCCATAGTCTATACCTTGATGG  1099
      ||||||| ||| ||||| |||||||||||||   ||||||| ||||||||
seq2  CTGTGCT-CAT-TTAGCTTTCTCCAGAGCCCTAGGTCTATA-CTTGATGG  1088

seq1  TCAGGAAGTTAGAGAAGGACCATGTGT-AAGCAAGGCATCAGAAGAGGAC  1148
      ||||  || ||||| |||| ||| |||  ||||| ||||| ||| | |||
seq2  TCAG--AG-TAGAG-AGGA-CATTTGTGTAGCAA-GCATC-GAA-AAGAC  1130

seq1  ATGCCTGTGGATATTTGAAA  1168
      ||||  |||||  |||||||
seq2  ATGC--GTGGAATTTTGAAA  1148

seq1: chr8_107743449_107744546
seq2: B6Ng01-129I22.g_68_1165 (reverse)

seq1  TACCTGAGGTAGTTGACCTTTAGGGCAGTCGATT-AAGAGAGGCTCCTGG  49
      |||||||||||| ||||||||||||||||| ||| ||||||||| |||||
seq2  TACCTGAGGTAGGTGACCTTTAGGGCAGTCCATTAAAGAGAGGCCCCTGG  50

seq1  TGGCTTAAATGAGACTCCTGATAAATAGAAACCCAGAGTTTCAGACAATG  99
      |||| ||||| |||||||||||||| || || ||||||||||||||||||
seq2  TGGC-TAAAT-AGACTCCTGATAAA-AGGAAACCAGAGTTTCAGACAATG  97

seq1  CC-ACAAGCACTGCCCTTT-GGGGGGGGGGGGGGAGCTTTGGACCTAACA  147
      || ||||||| | |||||| |||||||||||||||||||  ||||| |||
seq2  CCAACAAGCATTCCCCTTTGGGGGGGGGGGGGGGAGCTT--GACCT-ACA  144

seq1  CTA-TATATTAAAATGACAATATTTAAGGTAGCTAGCTACGAAGGAATTT  196
      ||| || |||||||||||||||||||| ||||||||||||||||||| ||
seq2  CTATTAAATTAAAATGACAATATTTAAAGTAGCTAGCTACGAAGGAA-TT  193

seq1  TAAAATTGCTT-ATATTGCTGCTATCAATGTTAGCGAGATTATAAATCAG  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCTTAATATTGCTGCTATCAATGTTAGCGAGATTATAAATCAG  243

seq1  TAATGAATTAT-AAAATGGAAAGAGCTCAAAGAAAATGTTGAAACTATAT  294
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  TAATGAATTATAAAAATGGAAAGAGCTC-AAGAAAATGTTGAAACTATAT  292

seq1  TAATGGTTTTAAAAAGTATTAAAGTATCTGAGGATGGAAAGATAGCTCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTTTAAAAAGTATTAAAGTATCTGAGGATGGAAAGATAGCTCAG  342

seq1  CAGTTAAAAGTACTTGCTCCTGCAGTGGATCAAGGTTTGGTTCTCAGCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAAGTACTTGCTCCTGCAGTGGATCAAGGTTTGGTTCTCAGCTT  392

seq1  TCACATGGTGTCTCAATAACCATCCTACTTCCAGCTAGCAGTGGCTAG-A  443
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCACATGGTGTCTCAATAACCATCCTACTTCCAGCTAGCAGTGGCTAGAA  442

seq1  ACAATCTTTTCTGAACTCCATGGGCACTAGGCATACACAGTATTACATAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTTTTCTGAACTCCATGGGCACTAGGCATACACAGTATTACATAT  492

seq1  AATACATGTGCAAGCAGGACACTTAATCATTGAGGATAGTTTAGAAGAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGTGCAAGCAGGACACTTAATCATTGAGGATAGTTTAGAAGAAA  542

seq1  CAATATAAAGTGACTGCCCTAAAAAGACATTGTCTCTGACCTCCTGGAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAAGTGACTGCCCTAAAAAGACATTGTCTCTGACCTCCTGGAAC  592

seq1  CTAGTCTATGCCCAAAATTGATCCAATGTAGTAGCAACCTTTAAATTATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTATGCCCAAAATTGATCCAATGTAGTAGCAACCTTTAAATTATA  642

seq1  TAGGAAGCCTTGGCAGTTGCACTGTCTGTGCTGGTCTGGGTAGTTAGAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGCCTTGGCAGTTGCACTGTCTGTGCTGGTCTGGGTAGTTAGAGT  692

seq1  CAATCAACCTGAGGAGACTTCCAAGCCGAAAGCTACAATCAACTAGAGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAACCTGAGGAGACTTCCAAGCCGAAAGCTACAATCAACTAGAGAA  742

seq1  GATACTGAATGCACATAGCCGGCTGGTCAGAGCTTAGCAGGTTTGAAAGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGAATGCACATAGCCGGCTGGTCAGAGCTTAGCAGGTTTGAAAGA  792

seq1  GCATCAGATAAGGGCTACAGCATGGGTGAGACAGGAGCAGTGCTCAATGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGATAAGGGCTACAGCATGGGTGAGACAGGAGCAGTGCTCAATGT  842

seq1  ATTATGTCAATCAAATGGAAGACATTTGGACCAGGACAAGAAGTGGCCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCAATCAAATGGAAGACATTTGGACCAGGACAAGAAGTGGCCAA  892

seq1  CAGATTAGGAGGTTTGAGAAATTTTTTGGTTAAAGATCAAAGTGATCTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAGGAGGTTTGAGAAATTTTTTGGTTAAAGATCAAAGTGATCTTT  942

seq1  TAGATATAGTGGCCTGGTGGGTATGGAGACTCAGTGTTAAGGGGGAAATG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATAGTGGCCTGGTGGGTATGGAGACTCAGTGTTAAGGGGGAAATG  992

seq1  TATAGGCACTGCAATTTTTAAAAAATTGTACC-TTTTTTTTTTTTTTTTT  1042
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATAGGCACTGCAATTTTTAAAAAATTGTACCTTTTTTTTTTTTTTTTTT  1042

seq1  TTTTTTGGTTTTTCGAAACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTCGAAACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  1092

seq1  GAATTC  1098
      ||||||
seq2  GAATTC  1098