BAC Information

Click to search

BAC

Clone NameB6Ng01-130J06
Chromosome8 (Build37)
Map Location 50,569,264 - 50,570,251
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz3, 2900073C17Rik, LOC100039866, 4930555F03Rik
Downstream geneLOC100039919, EG667495, LOC100039954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130J06.bB6Ng01-130J06.g
ACCDH931856DH931857
length1,156984
definitionDH931856|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J06, 5' end.DH931857|Mus musculus domesticus DNA, BAC clone: B6Ng01-130J06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgccgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccaa
tggaggagctagagaaagtacccatgagctaaagggatcttcaccctata
ggtggacacattatgactacagtaccctgagctctgactctagctgcata
tgtatcaagatggctagtcgcatcactgaaggaaggccaatgaacgcaga
cttgtgtgctcgtacagggacgtcagggcaagggggggaatggtggtggg
tagcat
gaattcctttgtctgtgttatttctcaaaggcaagtctagagaaagaact
tgtgagtttggacaccatacctccctcgtcctaggatccttaaggagtat
ttgagagtataaggggtccagtagaaactgcaaaaatcaattctgagagg
aacctccagaagcgattttgagaattctgtgccttctgttgatggttgtt
gtgtcagatatattgaggggtttatagtattgttatgaaattaatgcata
tcctccctgagatgtatatgttataattctaagtgccactgatataatat
taggttggtcctttgggacagagattaggactagacagctaagcctttat
gaataggattagtgcccttataaaggaggcctgatagagtgtccttaccc
catataccagctaaacacatatggagaatgcactggctactaataacaaa
gctggcctttatcagaccctggactttaatctttggtttctcagattata
gaactgataaaatttctattgtctataaatagacaagtcagtttgtgtta
tttatgacagccaaaagggtcaagatcgatgtttatcaaagagctgagtt
caagcatcaaattaaaaaaatatatatatcctcaaacagaaatgacaata
acgtaatctactaaatcatgtcgtaaacatatagagtacaaccttgtcac
tatgtgacaatcttttgattgaagatgtttttttcttctaacacacgcac
acacacataataaaaagtcatgtgataattcctccttttcttataatatt
tatatgctatggtaactaaatccatacatattaagtaacttatgattatt
attttaaatttattgtcagcttctacccccttgttagaataaatttcatc
tttggtgagtcttatttactgggggggttgcaaattaaaatactcacaaa
agcttaatattctgaaaaaatatactggaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_50569264_50570251
seq2: B6Ng01-130J06.g_68_1051

seq1  GAATTCCTTTGTCTGTGTTATTTCTCAAAGGCAAGTCTAGAGAAAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGTCTGTGTTATTTCTCAAAGGCAAGTCTAGAGAAAGAACT  50

seq1  TGTGAGTTTGGACACCATACCTCCCTCGTCCTAGGATCCTTAAGGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTGGACACCATACCTCCCTCGTCCTAGGATCCTTAAGGAGTAT  100

seq1  TTGAGAGTATAAGGGGTCCAGTAGAAACTGCAAAAATCAATTCTGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGTATAAGGGGTCCAGTAGAAACTGCAAAAATCAATTCTGAGAGG  150

seq1  AACCTCCAGAAGCGATTTTGAGAATTCTGTGCCTTCTGTTGATGGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCAGAAGCGATTTTGAGAATTCTGTGCCTTCTGTTGATGGTTGTT  200

seq1  GTGTCAGATATATTGAGGGGTTTATAGTATTGTTATGAAATTAATGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGATATATTGAGGGGTTTATAGTATTGTTATGAAATTAATGCATA  250

seq1  TCCTCCCTGAGATGTATATGTTATAATTCTAAGTGCCACTGATATAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTGAGATGTATATGTTATAATTCTAAGTGCCACTGATATAATAT  300

seq1  TAGGTTGGTCCTTTGGGACAGAGATTAGGACTAGACAGCTAAGCCTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGTCCTTTGGGACAGAGATTAGGACTAGACAGCTAAGCCTTTAT  350

seq1  GAATAGGATTAGTGCCCTTATAAAGGAGGCCTGATAGAGTGTCCTTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGGATTAGTGCCCTTATAAAGGAGGCCTGATAGAGTGTCCTTACCC  400

seq1  CATATACCAGCTAAACACATATGGAGAATGCACTGGCTACTAATAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCAGCTAAACACATATGGAGAATGCACTGGCTACTAATAACAAA  450

seq1  GCTGGCCTTTATCAGACCCTGGACTTTAATCTTTGGTTTCTCAGATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTTATCAGACCCTGGACTTTAATCTTTGGTTTCTCAGATTATA  500

seq1  GAACTGATAAAATTTCTATTGTCTATAAATAGACAAGTCAGTTTGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATAAAATTTCTATTGTCTATAAATAGACAAGTCAGTTTGTGTTA  550

seq1  TTTATGACAGCCAAAAGGGTCAAGATCGATGTTTATCAAAGAGCTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACAGCCAAAAGGGTCAAGATCGATGTTTATCAAAGAGCTGAGTT  600

seq1  CAAGCATCAAATTAAAAAAATATATATATCCTCAAACAGAAATGACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCAAATTAAAAAAATATATATATCCTCAAACAGAAATGACAATA  650

seq1  ACGTAATCTACTAAATCATGTCGTAAACATATAGAGTACAACCTTGTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATCTACTAAATCATGTCGTAAACATATAGAGTACAACCTTGTCAC  700

seq1  TATGTGACAATCTTTTGATTGAAGATGTTTTTTTCTTCTAACACACGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACAATCTTTTGATTGAAGATGTTTTTTTCTTCTAACACACGCAC  750

seq1  ACACACATAATAAAAAGTTCATGTGATAATTCTTCCTTTTTCTTTATAAT  800
      ||||||||||||||||| |||||||||||||| |||||||   |||||||
seq2  ACACACATAATAAAAAG-TCATGTGATAATTCCTCCTTTT--CTTATAAT  797

seq1  ATTTATATGCTAT-GTAACT-AATCCATACATATTAGGTAACTTATGATT  848
      ||||||||||||| |||||| ||||||||||||||| |||||||||||||
seq2  ATTTATATGCTATGGTAACTAAATCCATACATATTAAGTAACTTATGATT  847

seq1  ATTATTTTAAA-TTATTGTCAGCTTCTACCCCCTTGTTTAGATAAATTTC  897
      ||||||||||| ||||||||||||||||||||||||||   |||||||||
seq2  ATTATTTTAAATTTATTGTCAGCTTCTACCCCCTTGTTAGAATAAATTTC  897

seq1  ATCTATTGTGAGTCTTATTTACTTGGGGGGGGTTGCAAATTAAAAAAAAA  947
      |||| | ||||||||||||||||  ||||||||||||||||  |||| | 
seq2  ATCTTTGGTGAGTCTTATTTACT--GGGGGGGTTGCAAATT--AAAATAC  943

seq1  TCACAAAAGCATATATTTCTGAAAAAA-ATACATGTAATTTC  988
      |||||||||| ||   ||||||||||| |||| || ||||||
seq2  TCACAAAAGCTTAATATTCTGAAAAAATATAC-TGGAATTTC  984