BAC Information

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BAC

Clone NameB6Ng01-130O03
Chromosome8 (Build37)
Map Location 105,426,969 - 105,556,770
singlet/doubletdoublet
Overlap geneLOC100041368
Upstream geneCdh11, EG667618
Downstream gene1600027J07Rik, LOC100041397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130O03.bB6Ng01-130O03.g
ACCDH932082DH932083
length862586
definitionDH932082|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O03, 5' end.DH932083|Mus musculus domesticus DNA, BAC clone: B6Ng01-130O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,426,969 - 105,427,830)(105,556,187 - 105,556,770)
sequence
gaattctcaaagataacctgggtgtttttttttttttgaaatacaataat
agcatgagctctcttaaagcttttcttgttattattaaaatgtctgtact
ttataatctcaggaaaacaaatataaaggttatcagagtgagttgttaat
cctccaacagatttgtttagaataatgcaggtcatcctttgccaatatgg
tataactagaactgaaaaaaagatggaggtaaattatagttaataaaagc
cctgaatattaccttacacccaattcaataagtaaattttagagactgtt
gtgactcatggttataatagttgctgaagataaggacaagccagtgtctt
tacacataaaatcttggtgatgagttatccacagaaacagaagcaaaaat
aaggtgatagcatagttttctaaaagtatgcatggcttaatttcatagga
cactctccaaaggatgcttagtcaacgtgatccttgaaggtgagtaggca
tttgcccattatcccagattgggaacagttgggaaagttggggaaagtat
attctgagagaaagacctagcagaacattatattgtattatgcttctagt
tagtgtgcaaaacagttacctcttgtttccttattagcaataccactttg
catgttgtagtcagtagttgaatttatgctcagtgtagttacctttttaa
aatgttttgagaggtttatacatgggtaccgcatttacataatttctatg
tctccttttcccttctccaattcctcttatgtacatcctattctattctc
tctctctctctctctccctctctctctctctctctgtctctgtctctgtc
tctgtctctgtc
gaattcatcatgatactgccatgatccttagtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaaagattggctttcctca
atggcatttgaacttacacacttcaacaaataatagtgtttactccaatt
atttgttggtctctccaaagaaatgcagacaaatgcagatggatctctac
tgaaagtcacgtgagtgcttttataattgtaggcagccagggaccttgac
aagatagctgttcattgacactgaaggaatcttagactactccttaaaaa
aaaaaaaaaaatctgttttcctacttttatattttcacacttaatcccta
aacgttttacgttttatgtgttaattttaagaattttattagcattaatc
tcaataacatctcttgtctcgggttcagactggaacttcctttagtcccc
cctctacagtagttgtccagatcagtataaggactgaagcccacaagtgt
ggtcatcattactgtcccccacgcatttctctggtgtgtgtgggggggca
gcattttttcttggtgtgtgtgtgggggggggcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_105426969_105427830
seq2: B6Ng01-130O03.b_45_906

seq1  GAATTCTCAAAGATAACCTGGGTGTTTTTTTTTTTTTGAAATACAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGATAACCTGGGTGTTTTTTTTTTTTTGAAATACAATAAT  50

seq1  AGCATGAGCTCTCTTAAAGCTTTTCTTGTTATTATTAAAATGTCTGTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAGCTCTCTTAAAGCTTTTCTTGTTATTATTAAAATGTCTGTACT  100

seq1  TTATAATCTCAGGAAAACAAATATAAAGGTTATCAGAGTGAGTTGTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCTCAGGAAAACAAATATAAAGGTTATCAGAGTGAGTTGTTAAT  150

seq1  CCTCCAACAGATTTGTTTAGAATAATGCAGGTCATCCTTTGCCAATATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAACAGATTTGTTTAGAATAATGCAGGTCATCCTTTGCCAATATGG  200

seq1  TATAACTAGAACTGAAAAAAAGATGGAGGTAAATTATAGTTAATAAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTAGAACTGAAAAAAAGATGGAGGTAAATTATAGTTAATAAAAGC  250

seq1  CCTGAATATTACCTTACACCCAATTCAATAAGTAAATTTTAGAGACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATATTACCTTACACCCAATTCAATAAGTAAATTTTAGAGACTGTT  300

seq1  GTGACTCATGGTTATAATAGTTGCTGAAGATAAGGACAAGCCAGTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCATGGTTATAATAGTTGCTGAAGATAAGGACAAGCCAGTGTCTT  350

seq1  TACACATAAAATCTTGGTGATGAGTTATCCACAGAAACAGAAGCAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATAAAATCTTGGTGATGAGTTATCCACAGAAACAGAAGCAAAAAT  400

seq1  AAGGTGATAGCATAGTTTTCTAAAAGTATGCATGGCTTAATTTCATAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATAGCATAGTTTTCTAAAAGTATGCATGGCTTAATTTCATAGGA  450

seq1  CACTCTCCAAAGGATGCTTAGTCAACGTGATCCTTGAAGGTGAGTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCAAAGGATGCTTAGTCAACGTGATCCTTGAAGGTGAGTAGGCA  500

seq1  TTTGCCCATTATCCCAGATTGGGAACAGTTGGGAAAGTTGGGGAAAGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCATTATCCCAGATTGGGAACAGTTGGGAAAGTTGGGGAAAGTAT  550

seq1  ATTCTGAGAGAAAGACCTAGCAGAACATTATATTGTATTATGCTTCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAGAGAAAGACCTAGCAGAACATTATATTGTATTATGCTTCTAGT  600

seq1  TAGTGTGCAAAACAGTTACCTCTTGTTTCCTTATTAGCAATACCACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCAAAACAGTTACCTCTTGTTTCCTTATTAGCAATACCACTTTG  650

seq1  CATGTTGTAGTCAGTAGTTGAATTTATGCTCAGTGTAGTTACCTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGTAGTCAGTAGTTGAATTTATGCTCAGTGTAGTTACCTTTTTAA  700

seq1  AATGTTTTGAGAGGTTTATACATGGGTACCGCATTTACATAATTTCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGAGAGGTTTATACATGGGTACCGCATTTACATAATTTCTATG  750

seq1  TCTCCTTTTCCCTTCTCCAATTCCTCTTATGTACATCCTATTCTATTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTCCCTTCTCCAATTCCTCTTATGTACATCCTATTCTATTCTC  800

seq1  TCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTGTCTCTGTCTCTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTGTCTCTGTCTCTGTC  850

seq1  TCTGTCTCTGTC  862
      ||||||||||||
seq2  TCTGTCTCTGTC  862

seq1: chr8_105556187_105556770
seq2: B6Ng01-130O03.g_66_651 (reverse)

seq1  ACTGCCCCCCCCCACACACACACCA--GAAAAATGCTGCCCCCCCACACA  48
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ACTGCCCCCCCCCACACACACACCAAGAAAAAATGCTGCCCCCCCACACA  50

seq1  CACCAGAGAAATGCGTGGGGGACAGTAATGATGACCACACTTGTGGGCTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGAAATGCGTGGGGGACAGTAATGATGACCACACTTGTGGGCTT  100

seq1  CAGTCCTTATACTGATCTGGACAACTACTGTAGAGGGGGGACTAAAGGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTATACTGATCTGGACAACTACTGTAGAGGGGGGACTAAAGGAA  150

seq1  GTTCCAGTCTGAACCCGAGACAAGAGATGTTATTGAGATTAATGCTAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGTCTGAACCCGAGACAAGAGATGTTATTGAGATTAATGCTAATA  200

seq1  AAATTCTTAAAATTAACACATAAAACGTAAAACGTTTAGGGATTAAGTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTAAAATTAACACATAAAACGTAAAACGTTTAGGGATTAAGTGT  250

seq1  GAAAATATAAAAGTAGGAAAACAGATTTTTTTTTTTTTTTTAAGGAGTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATAAAAGTAGGAAAACAGATTTTTTTTTTTTTTTTAAGGAGTAG  300

seq1  TCTAAGATTCCTTCAGTGTCAATGAACAGCTATCTTGTCAAGGTCCCTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATTCCTTCAGTGTCAATGAACAGCTATCTTGTCAAGGTCCCTGG  350

seq1  CTGCCTACAATTATAAAAGCACTCACGTGACTTTCAGTAGAGATCCATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTACAATTATAAAAGCACTCACGTGACTTTCAGTAGAGATCCATCT  400

seq1  GCATTTGTCTGCATTTCTTTGGAGAGACCAACAAATAATTGGAGTAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCTGCATTTCTTTGGAGAGACCAACAAATAATTGGAGTAAACA  450

seq1  CTATTATTTGTTGAAGTGTGTAAGTTCAAATGCCATTGAGGAAAGCCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTGTTGAAGTGTGTAAGTTCAAATGCCATTGAGGAAAGCCAAT  500

seq1  CTTTAAACACACACACACACACACACACACACACACACACACACACACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACACACACACACACACACACACACACACACACACACACACACAC  550

seq1  ACACACTAAGGATCATGGCAGTATCATGATGAATTC  584
      ||||||||||||||||||||||||||||||||||||
seq2  ACACACTAAGGATCATGGCAGTATCATGATGAATTC  586