BAC Information

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BAC

Clone NameB6Ng01-132C11
Chromosome8 (Build37)
Map Location 73,553,511 - 73,666,004
singlet/doubletdoublet
Overlap geneLOC100042057, LOC665858
Upstream gene9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
Downstream geneLOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132C11.bB6Ng01-132C11.g
ACCDH933030DH933031
length1,1111,076
definitionDH933030|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C11, 5' end.DH933031|Mus musculus domesticus DNA, BAC clone: B6Ng01-132C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,664,880 - 73,666,004)(73,553,511 - 73,554,593)
sequence
gaattcagtacaagatttataatgctagtgtagtaaactctgtggaaaga
aatgaactacttatatatccattttgaaagctccatctgaaatgtggaag
aaaaatgtcttgaactgcggaatcaccaaagttgctgggtacctgtgcta
ggacagtttaagaacatctcccagtgaaaggtagttttctgctgacttgg
acatttcaagactcagacatcatttggaaacactgtttgttacctgtgat
tatgtacagtataattctaaagaaatggcttatgctgtcatctttggggt
cataagttataaaatttcagatttagggactgtgggtgtttatccataat
agaacatttgccaatgacacctatggcccttaattcagtgacaaacactg
tcaaaattaaaaatatggcaatggagcaacaactgatcttggttatcctt
tggcttggtggatggctcatgaggtgaactcctgaactaggcagtgatcc
ctggtgcatgctattttttgttgtggtgaaactgtctcttttccagctcc
cacttcatgtgtgctaagcttcctaattatgtgcctctgagtttcttaca
atctccctatcattttaatactcctgacttaagcaattgtcaccctcaag
agcagcactaagattgaagaaaggaagaaactgtacctttttgcacactt
cgctgctaaaaattctaccatttcaggtttctcttcaaattctgcaagtt
gcaacggtgtcatgccatactataaaggaaaaaatattgcattttacaaa
actacttgtttctcaacaatctgctcatcaccgattttgtgaagataaat
agacaagaaaagagtcacaagggatcattcaccctacaacacctgctgca
ctttcccacacacagctgtcttttccctttgacacactttttccctgtcc
aacactgcctataacacactcccttcacaactctcccaaacactcaagga
ttgcaatcttctagctcgtgagtgggctcattgcacagcccagaatacag
agtacactatgctatgcccctgttgagatgtgcctcagaagggtctgggg
caaagttctca
gaattctttatgagacctggggatcattgaattttccttctgaattggtg
aataaccagaggtgctaagaagttaggacttccagagggtttagtcactt
ctctttcatgttgctttttcctgctgtcttccttttaaatattgagtact
agtgaatagaaggtattctgaatcctgcataccattaaaaaccatcactc
attgtatatatcagacatacatatatattttgtaagtcctcaaatcacag
gaaagaaacttgccagttctgaaaattaggaatcttaggtttcataattc
caaatgaaaaacatgagctcatatagcatagaaagtaaaacatttagcat
gcaataagtcatatactatatgcatatacatacaaaacaatagtggtcat
tttcatcaggcaggacagcctgtaccccagtgttcacatccacatatttc
acacctgtagacacagggttgaaggggtacagaataaatggcaatgtgga
cacctttaagtagccacagttattttccttataagagatgcacattccag
attcagttagctgtcaccattcactgttgttaacagttcttcctgtttta
taaacattccagggttcacaactatgatagcatttgcagcagtttctttt
ttcatgtgtctataaacataaatgactagataacttcagattgcctttgc
ttgatcctagagcgtggtgatggcacataaagaatgtttgaaagtaacag
gaaatgcataactcaatgagcaccagatgagggtaagagatcctgtctct
gctcaggagccattcttacaactttcttaaacacattgtgcacctgatag
tctatggcttgagcctggatttgctcctcacagattcatgttttggctcc
cactgtgtgatgctatttttgaaggatgtagagctttcagaagtggggac
tggtggagaaagtatataccaggagcagtcagcttttgaggggtttgact
acttatttctgcctgctggtagcagcagtgtggtggtgtttgataaagaa
ttgccccatagctcatatatttgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_73664880_73666004
seq2: B6Ng01-132C11.b_48_1158 (reverse)

seq1  TGAGAAACTCTGCCCCAGACCCCTCCTGA-GCACACTCCTTCAACAGGGG  49
      |||| |||| ||||||||| |||| |||| ||||| ||  ||||||||||
seq2  TGAG-AACTTTGCCCCAGA-CCCTTCTGAGGCACA-TC--TCAACAGGGG  45

seq1  CATAGCATAGTGTACTCTGTATTCTGGGCTGTGGCAATGGAGGCCCCACT  99
      |||||||||||||||||||||||||||||||| ||||| |||  ||||||
seq2  CATAGCATAGTGTACTCTGTATTCTGGGCTGT-GCAAT-GAG--CCCACT  91

seq1  CCACGGAGCTAAGAAGATTGCAATCCTTGAGTGTTTGGGGAGAGTTGTGG  149
       ||| ||||| ||||||||||||||||||||||||| ||||||||||| |
seq2  -CAC-GAGCT-AGAAGATTGCAATCCTTGAGTGTTT-GGGAGAGTTGT-G  136

seq1  AAGGGAGTGGTGTTATAGGCAGTGTTGGACAGGGAAAAAGTGTGTCAAAG  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGT-GTGTTATAGGCAGTGTTGGACAGGGAAAAAGTGTGTCAAAG  185

seq1  GGAAAAGACAGCTGTGTGTGGGAAAGTGCAGCAGGTGTTGTAGGGTGAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGACAGCTGTGTGTGGGAAAGTGCAGCAGGTGTTGTAGGGTGAAT  235

seq1  GATCCCTTGTGACTCTTTTCTTGTCTATTTATCTTCACAAAATCGGTGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTGTGACTCTTTTCTTGTCTATTTATCTTCACAAAATCGGTGAT  285

seq1  GAGCAGATTGTTGAGAAACAAGTAGTTTTGTAAAATGCAATATTTTTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATTGTTGAGAAACAAGTAGTTTTGTAAAATGCAATATTTTTTCC  335

seq1  TTTATAGTATGGCATGACACCGTTGCAACTTGCAGAATTTGAAGAGAAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTATGGCATGACACCGTTGCAACTTGCAGAATTTGAAGAGAAAC  385

seq1  CTGAAATGGTAGAATTTTTAGCAGCGAAGTGTGCAAAAAGGTACAGTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGGTAGAATTTTTAGCAGCGAAGTGTGCAAAAAGGTACAGTTTC  435

seq1  TTCCTTTCTTCAATCTTAGTGCTGCTCTTGAGGGTGACAATTGCTTAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTCAATCTTAGTGCTGCTCTTGAGGGTGACAATTGCTTAAGT  485

seq1  CAGGAGTATTAAAATGATAGGGAGATTGTAAGAAACTCAGAGGCACATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTATTAAAATGATAGGGAGATTGTAAGAAACTCAGAGGCACATAA  535

seq1  TTAGGAAGCTTAGCACACATGAAGTGGGAGCTGGAAAAGAGACAGTTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAGCTTAGCACACATGAAGTGGGAGCTGGAAAAGAGACAGTTTCA  585

seq1  CCACAACAAAAAATAGCATGCACCAGGGATCACTGCCTAGTTCAGGAGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAAAAAATAGCATGCACCAGGGATCACTGCCTAGTTCAGGAGTT  635

seq1  CACCTCATGAGCCATCCACCAAGCCAAAGGATAACCAAGATCAGTTGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATGAGCCATCCACCAAGCCAAAGGATAACCAAGATCAGTTGTTG  685

seq1  CTCCATTGCCATATTTTTAATTTTGACAGTGTTTGTCACTGAATTAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCCATATTTTTAATTTTGACAGTGTTTGTCACTGAATTAAGGG  735

seq1  CCATAGGTGTCATTGGCAAATGTTCTATTATGGATAAACACCCACAGTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTGTCATTGGCAAATGTTCTATTATGGATAAACACCCACAGTCC  785

seq1  CTAAATCTGAAATTTTATAACTTATGACCCCAAAGATGACAGCATAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTGAAATTTTATAACTTATGACCCCAAAGATGACAGCATAAGCC  835

seq1  ATTTCTTTAGAATTATACTGTACATAATCACAGGTAACAAACAGTGTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGAATTATACTGTACATAATCACAGGTAACAAACAGTGTTTC  885

seq1  CAAATGATGTCTGAGTCTTGAAATGTCCAAGTCAGCAGAAAACTACCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATGTCTGAGTCTTGAAATGTCCAAGTCAGCAGAAAACTACCTTT  935

seq1  CACTGGGAGATGTTCTTAAACTGTCCTAGCACAGGTACCCAGCAACTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGAGATGTTCTTAAACTGTCCTAGCACAGGTACCCAGCAACTTTG  985

seq1  GTGATTCCGCAGTTCAAGACATTTTTCTTCCACATTTCAGATGGAGCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCGCAGTTCAAGACATTTTTCTTCCACATTTCAGATGGAGCTTT  1035

seq1  CAAAATGGATATATAAGTAGTTCATTTCTTTCCACAGAGTTTACTACACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGATATATAAGTAGTTCATTTCTTTCCACAGAGTTTACTACACT  1085

seq1  AGCATTATAAATCTTGTACTGAATTC  1125
      ||||||||||||||||||||||||||
seq2  AGCATTATAAATCTTGTACTGAATTC  1111

seq1: chr8_73553511_73554593
seq2: B6Ng01-132C11.g_68_1143

seq1  GAATTCTTTATGAGACCTGGGGATCATTGAATTTTCCTTCTGAATTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGAGACCTGGGGATCATTGAATTTTCCTTCTGAATTGGTG  50

seq1  AATAACCAGAGGTGCTAAGAAGTTAGGACTTCCAGAGGGTTTAGTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCAGAGGTGCTAAGAAGTTAGGACTTCCAGAGGGTTTAGTCACTT  100

seq1  CTCTTTCATGTTGCTTTTTCCTGCTGTCTTCCTTTTAAATATTGAGTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCATGTTGCTTTTTCCTGCTGTCTTCCTTTTAAATATTGAGTACT  150

seq1  AGTGAATAGAAGGTATTCTGAATCCTGCATACCATTAAAAACCATCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAGAAGGTATTCTGAATCCTGCATACCATTAAAAACCATCACTC  200

seq1  ATTGTATATATCAGACATACATATATATTTTGTAAGTCCTCAAATCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATATCAGACATACATATATATTTTGTAAGTCCTCAAATCACAG  250

seq1  GAAAGAAACTTGCCAGTTCTGAAAATTAGGAATCTTAGGTTTCATAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACTTGCCAGTTCTGAAAATTAGGAATCTTAGGTTTCATAATTC  300

seq1  CAAATGAAAAACATGAGCTCATATAGCATAGAAAGTAAAACATTTAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAAACATGAGCTCATATAGCATAGAAAGTAAAACATTTAGCAT  350

seq1  GCAATAAGTCATATACTATATGCATATACATACAAAACAATAGTGGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGTCATATACTATATGCATATACATACAAAACAATAGTGGTCAT  400

seq1  TTTCATCAGGCAGGACAGCCTGTACCCCAGTGTTCACATCCACATATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAGGCAGGACAGCCTGTACCCCAGTGTTCACATCCACATATTTC  450

seq1  ACACCTGTAGACACAGGGTTGAAGGGGTACAGAATAAATGGCAATGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTAGACACAGGGTTGAAGGGGTACAGAATAAATGGCAATGTGGA  500

seq1  CACCTTTAAGTAGCCACAGTTATTTTCCTTATAAGAGATGCACATTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAAGTAGCCACAGTTATTTTCCTTATAAGAGATGCACATTCCAG  550

seq1  ATTCAGTTAGCTGTCACCATTCACTGTTGTTAACAGTTCTTCCTGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTAGCTGTCACCATTCACTGTTGTTAACAGTTCTTCCTGTTTTA  600

seq1  TAAACATTCCAGGGTTCACAACTATGATAGCATTTGCAGCAGTTTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATTCCAGGGTTCACAACTATGATAGCATTTGCAGCAGTTTCTTTT  650

seq1  TTCATGTGTCTATAAACATAAATGACTAGATAACTTCAGATTGCCTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTCTATAAACATAAATGACTAGATAACTTCAGATTGCCTTTGC  700

seq1  TTGATCCTAGAGCGTGGTGATGGCACATAAAGAATGTTTGAAAGTAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTAGAGCGTGGTGATGGCACATAAAGAATGTTTGAAAGTAACAG  750

seq1  GAAATGCATAACTCAATGAGCACCAGATGAGGGTAAGAGATCCTGTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCATAACTCAATGAGCACCAGATGAGGGTAAGAGATCCTGTCTCT  800

seq1  GCTCAGGAGCCATTCTTACAACTTTCTTAAACACATTGTGCACCTGATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGGAGCCATTCTTACAACTTTCTTAAACACATTGTGCACCTGATAG  850

seq1  TCTATGGCTTGAGCCTGGA-TTGCTCCTCACAGATTCATGTTTTGGCTCC  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTATGGCTTGAGCCTGGATTTGCTCCTCACAGATTCATGTTTTGGCTCC  900

seq1  CACTGTGTGATGCTA-TTTTGAAGGATGTAGAGCTTTCAGGAAGTGGGGA  948
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  CACTGTGTGATGCTATTTTTGAAGGATGTAGAGCTTTCA-GAAGTGGGGA  949

seq1  CTGGGTGGAGAAAGTATATTACCAGGAGCAGGTCAGCTTTTGAGGGGTTT  998
      || ||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CT-GGTGGAGAAAGTATA-TACCAGGAGCA-GTCAGCTTTTGAGGGGTTT  996

seq1  GACTACTTATTTCCTGCCTGCTGGTAGCAGCCAAGTGTGGTGGTGGTTTG  1048
      |||||||||||| ||||||||||||||||||  ||||||||||| |||||
seq2  GACTACTTATTT-CTGCCTGCTGGTAGCAGC--AGTGTGGTGGT-GTTTG  1042

seq1  AT-AAGAATGGCCCCCATAGGCTCATATATTTGAAT  1083
      || |||||| | ||||||| ||||||||||||||||
seq2  ATAAAGAATTG-CCCCATA-GCTCATATATTTGAAT  1076