BAC Information

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BAC

Clone NameB6Ng01-132G19
Chromosome8 (Build37)
Map Location 6,314,116 - 6,429,865
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623409, LOC669429, LOC100040360
Downstream geneEG665127, EG546032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132G19.bB6Ng01-132G19.g
ACCDH933230DH933231
length9781,080
definitionDH933230|Mus musculus domesticus DNA, BAC clone: B6Ng01-132G19, 5' end.DH933231|Mus musculus domesticus DNA, BAC clone: B6Ng01-132G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,314,116 - 6,314,887)(6,428,765 - 6,429,865)
sequence
gaattcaaggcccatacctaaacatgataaaaacaatctacagcaaaccg
tagccaacatcaaagtaaatggtaagaagctggaagcaatcccactaaaa
tcagggactagacaaggctgcccactttctccctacctattcaacatagt
acttgaagtcctagccagagcaattcgacaacaaaaggagataaagggga
tacaaattggaaaggaagaagtcaaaatatcactatttgtagatgatatg
atagtacatttaagtgaccctaaaaattccaccagagaacacctaaacct
gataaacagcttcagtgcagtagctggatataaaattaactcaaacaagt
caatggcctttctctatgcaatggttaatttttatggtccacatgcttgg
atttagaaatacttaagacacatgcctctgtctatatctgaaagtcttcc
cccagagaggttttactggaaaggaaagacctattttgaatatagaggac
accatccacacacttcatactagtaatacaaagaagatgaaatgacagtc
tatatttctctctgcttcttagggttctgcctccatgcttttccctccag
ggtagggtacattccttcagtccacaagaccccggaaaaggttttcttct
ttagaatgttcttgtcacaaattttatgatagcaacagagaaaacaatga
ataaatcccctattttttgcataaattccctttgagtgactgctgagaat
gctggcccttcacctcgcgttgtccagaagaaatgtcacctgatttaata
atgactgataaacaatgagccacattctcaagcaatttcagtatgctacc
tgtaaactgtgctaaagaaaggattttaaacttgcaacacctggaccgaa
acacttctgcaactgagaaaagtactagattgttaaatgtcagcattctt
tcctcctagtgtgtgtgtgggtgggggg

gaattctgggttctgtcttcagctctgcacaaacccagcatgatgacaca
gctttgaggtcacaggagtcagagcaaccaataaaaatgttgatgaagaa
ggaaaaagtccaaggtcaccatcacatatatggtacatataagctcagtt
tggtacgcatgaaccatgcttcaaaacaagacagacaaactaaaacaaaa
ataatacagaggtttcagcacacactttctttttcaatatttatttattt
atgtattcattaagttatcttaaacagagtgaaaacctctgaattatctt
gctctaacaaggttattaggcaagcatttgttatttaaatgtgcccttat
tgaactcaatttagaattagcagaggtttgaatatttgtttaaatgttaa
cacatttcatctttcaaggcactctgctggaatgactccaggatcggatg
tgtgtttttttgtctggtagagttaatgcaaccaatttagggaaaaaaaa
acattcatttctttcattatattatatctgaaacaaaaccaaaatgaggt
aacatcttcatctgaaaccttatcagaacccatgagcatgaagtacaagt
gtattttgtaaatacctcacctgtgtttagaagggaaaatgaaagagttg
caggtaacttcaaaagactaagaaaaacgaaatcattgacaaagaatgag
caggggcaggatcaggagacagttccattgagagaaggtcaaaggatgtt
ggtagatggagaaaaaggtgataggtcaattctgagatcacaactcatta
ggcacgtgcttgcaatctttccgcattactgaaacctttatttcatgatt
atttctgacccaaaggtgagagtctatcagctattttcttttgctcattc
tgtaaaggtttgcaatggacttttgttacaaaagctaaataattaaccat
gagatcatgtatgcttatttagttataaataatggcacagttaaatgtag
cattatgataataataattgaagcctctatttaatcagtgtcatgggatc
attggcttaaagaaaaacccccatcatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_6314116_6314887
seq2: B6Ng01-132G19.b_253_1026

seq1  AATTGGAAAGGAAGAAGTCAAAATATCACTATTTGTAGATGATATGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAAAGGAAGAAGTCAAAATATCACTATTTGTAGATGATATGATAG  50

seq1  TACATTTAAGTGACCCTAAAAATTCCACCAGAGAACACCTAAACCTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTAAGTGACCCTAAAAATTCCACCAGAGAACACCTAAACCTGATA  100

seq1  AACAGCTTCAGTGCAGTAGCTGGATATAAAATTAACTCAAACAAGTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTCAGTGCAGTAGCTGGATATAAAATTAACTCAAACAAGTCAAT  150

seq1  GGCCTTTCTCTATGCAATGGTTAATTTTTATGGTCCACATGCTTGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCTCTATGCAATGGTTAATTTTTATGGTCCACATGCTTGGATTT  200

seq1  AGAAATACTTAAGACACATGCCTCTGTCTATATCTGAAAGTCTTCCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATACTTAAGACACATGCCTCTGTCTATATCTGAAAGTCTTCCCCCA  250

seq1  GAGAGGTTTTACTGGAAAGGAAAGACCTATTTTGAATATAGAGGACACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTTTACTGGAAAGGAAAGACCTATTTTGAATATAGAGGACACCA  300

seq1  TCCACACACTTCATACTAGTAATACAAAGAAGATGAAATGACAGTCTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACACTTCATACTAGTAATACAAAGAAGATGAAATGACAGTCTATA  350

seq1  TTTCTCTCTGCTTCTTAGGGTTCTGCCTCCATGCTTTTCCCTCCAGGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTGCTTCTTAGGGTTCTGCCTCCATGCTTTTCCCTCCAGGGTA  400

seq1  GGGTACATTCCTTCAGTCCACAAGACCCCGGAAAAGGTTTTCTTCTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACATTCCTTCAGTCCACAAGACCCCGGAAAAGGTTTTCTTCTTTAG  450

seq1  AATGTTCTTGTCACAAATTTTATGATAGCAACAGAGAAAACAATGAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTTGTCACAAATTTTATGATAGCAACAGAGAAAACAATGAATAA  500

seq1  ATCCCCTATTTTTTGCATAAATTCCCTTTGAGTGACTGCTGAGAATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTATTTTTTGCATAAATTCCCTTTGAGTGACTGCTGAGAATGCTG  550

seq1  GCCCTTCACCTCGCGTTGTCCAGAAGAAATGTCACCTGATTTAATAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCACCTCGCGTTGTCCAGAAGAAATGTCACCTGATTTAATAATGA  600

seq1  CTGATAAACAATGAGCCACATTCTCAAGCAATTTCAGTATGCTACCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAACAATGAGCCACATTCTCAAGCAATTTCAGTATGCTACCTGTA  650

seq1  AACTGTGCTAAAG-AAGGATTTTAAACTTGCAACACCTGGACCGAAACAC  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCTAAAGAAAGGATTTTAAACTTGCAACACCTGGACCGAAACAC  700

seq1  TTCTGCAACTGAGAAAAGTACTAGATTGTTAAATGTCAGCATTCTTTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAACTGAGAAAAGTACTAGATTGTTAAATGTCAGCATTCTTTCCT  750

seq1  CCTAGTGTGTGTGT-GGTGGGGGG  772
      |||||||||||||| |||||||||
seq2  CCTAGTGTGTGTGTGGGTGGGGGG  774


seq1: chr8_6428765_6429865
seq2: B6Ng01-132G19.g_66_1145 (reverse)

seq1  GACATTGATGGGGGTGTTTTTCTTTTTAAGCCTATTGATTCCCATGACAC  50
      |||| ||||||||  |||||||  |||||||| | ||| |||||||||||
seq2  GACA-TGATGGGG--GTTTTTC--TTTAAGCC-AATGA-TCCCATGACAC  43

seq1  TGATTTAAATAGAGGCTTTTCAATTTATTTATTATCAATAATGCTACATT  100
      ||| ||||||||||||  |||||||   |||||||| |||||||||||||
seq2  TGA-TTAAATAGAGGC--TTCAATT--ATTATTATC-ATAATGCTACATT  87

seq1  TTAACCTGTGCCAATTATTTATAACTTAAATAAGCATACATGATTCTTCA  150
      |  | ||||||| |||||||||||| ||||||||||||||||||   |||
seq2  T--AACTGTGCC-ATTATTTATAAC-TAAATAAGCATACATGAT--CTCA  131

seq1  TGGTTAATTATTTAGCTTTTGTAACAAAAAGTCCATTGCAAAACCTTTAC  200
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TGGTTAATTATTTAGCTTTTGTAAC-AAAAGTCCATTGC-AAACCTTTAC  179

seq1  AGAATGAGCAAAAGAAAATAGCTGATAGACTCTCACCTTTGGGTCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGCAAAAGAAAATAGCTGATAGACTCTCACCTTTGGGTCAGAAA  229

seq1  TAATCATGAAATAAAGGTTTCAGTAATGCGGAAAGATTGCAAGCACGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATGAAATAAAGGTTTCAGTAATGCGGAAAGATTGCAAGCACGTGC  279

seq1  CTAATGAGTTGTGATCTCAGAATTGACCTATCACCTTTTTCTCCATCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGTTGTGATCTCAGAATTGACCTATCACCTTTTTCTCCATCTAC  329

seq1  CAACATCCTTTGACCTTCTCTCAATGGAACTGTCTCCTGATCCTGCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTTTGACCTTCTCTCAATGGAACTGTCTCCTGATCCTGCCCCT  379

seq1  GCTCATTCTTTGTCAATGATTTCGTTTTTCTTAGTCTTTTGAAGTTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCTTTGTCAATGATTTCGTTTTTCTTAGTCTTTTGAAGTTACCT  429

seq1  GCAACTCTTTCATTTTCCCTTCTAAACACAGGTGAGGTATTTACAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCTTTCATTTTCCCTTCTAAACACAGGTGAGGTATTTACAAAATA  479

seq1  CACTTGTACTTCATGCTCATGGGTTCTGATAAGGTTTCAGATGAAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTACTTCATGCTCATGGGTTCTGATAAGGTTTCAGATGAAGATGT  529

seq1  TACCTCATTTTGGTTTTGTTTCAGATATAATATAATGAAAGAAATGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATTTTGGTTTTGTTTCAGATATAATATAATGAAAGAAATGAATG  579

seq1  TTTTTTTTTCCCTAAATTGGTTGCATTAACTCTACCAGACAAAAAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCCTAAATTGGTTGCATTAACTCTACCAGACAAAAAAACAC  629

seq1  ACATCCGATCCTGGAGTCATTCCAGCAGAGTGCCTTGAAAGATGAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCGATCCTGGAGTCATTCCAGCAGAGTGCCTTGAAAGATGAAATGT  679

seq1  GTTAACATTTAAACAAATATTCAAACCTCTGCTAATTCTAAATTGAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTAAACAAATATTCAAACCTCTGCTAATTCTAAATTGAGTTC  729

seq1  AATAAGGGCACATTTAAATAACAAATGCTTGCCTAATAACCTTGTTAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGGCACATTTAAATAACAAATGCTTGCCTAATAACCTTGTTAGAG  779

seq1  CAAGATAATTCAGAGGTTTTCACTCTGTTTAAGATAACTTAATGAATACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATTCAGAGGTTTTCACTCTGTTTAAGATAACTTAATGAATACA  829

seq1  TAAATAAATAAATATTGAAAAAGAAAGTGTGTGCTGAAACCTCTGTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATATTGAAAAAGAAAGTGTGTGCTGAAACCTCTGTATTA  879

seq1  TTTTTGTTTTAGTTTGTCTGTCTTGTTTTGAAGCATGGTTCATGCGTACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTAGTTTGTCTGTCTTGTTTTGAAGCATGGTTCATGCGTACC  929

seq1  AAACTGAGCTTATATGTACCATATATGTGATGGTGACCTTGGACTTTTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCTTATATGTACCATATATGTGATGGTGACCTTGGACTTTTTC  979

seq1  CTTCTTCATCAACATTTTTATTGGTTGCTCTGACTCCTGTGACCTCAAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCATCAACATTTTTATTGGTTGCTCTGACTCCTGTGACCTCAAAG  1029

seq1  CTGTGTCATCATGCTGGGTTTGTGCAGAGCTGAAGACAGAACCCAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCATCATGCTGGGTTTGTGCAGAGCTGAAGACAGAACCCAGAATT  1079

seq1  C  1101
      |
seq2  C  1080


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