BAC Information

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BAC

Clone NameB6Ng01-132L18
Chromosome8 (Build37)
Map Location 97,828,113 - 98,011,291
singlet/doubletdoublet
Overlap geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2
Upstream geneNup93, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3
Downstream gene4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132L18.bB6Ng01-132L18.g
ACCDH933461DH933462
length206991
definitionDH933461|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L18, 5' end.DH933462|Mus musculus domesticus DNA, BAC clone: B6Ng01-132L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,828,113 - 97,828,318)(98,010,302 - 98,011,291)
sequence
cagtatatgacacgttctgtatcatgtgtgacctttgagcatggctcctt
tcactgagtatatgcatctggaattcctttctaagggttcctgtcactaa
ttcatttatttctattaaggagtagtaagtattctatggcatggattttt
gcataccttgcttatctgtttccaagctgaaggaactgtttgcggtgggg
gggggg
gaattctgaacttctcaaacaaagcttgtgaggggggactgtatctgata
tggaataaagaggtattcgcaagagaggaaggagtttgcatggagaatct
gtcaactgtagggattctaaatctgtactcgttactctctgctcccagtt
actccagaaaaagtccggaaaacccaaaacaaaacaaaactggagtctgc
tcagagataagtttaaagccaaaaattcaggacaattccctcagttgata
ttttcatttcatgtagcagtaaagtttcaggtgggctggatatagcaagc
cagccgctaagagatctggggcaacagaagagtacattctagcccctgaa
ataataactggaacaaaacttgtctctgtggcaagactagccctctcgct
ttgataatgatagggcttttgttatcactcaaatgaagacatgatcttaa
tgagcatgaagagtcagccaagtttctgtacaggtgattgaagattcaat
agtgctttgtaggttgttcgagagggtggttcgtaggacctgagcggttc
ttcatggttgtcaagtcatttaaatgcatatgcttgtcaccttaggatct
gggcagtttttcatgttgtcagatcacttaacatgtatgtgtgtcactag
tgaaagagcactggagagtggtagtgtttcaccagattttcacagtgccc
agtgaacaaaaatgcaggattgaaaagcttgtgccttagggcagttctta
tttaattgtgtagattttagcgttgtgtgaatcacctttcaaaaaaaatg
gctgctgctaatgctccttaccatcctggcctagtgatgaaggagcagag
ttgctgcagagatgggtgatgctattgctgctgcccaagacactggggtg
agaaggaaggattgatggcagatagggagcttgtcctcgcttagtatgag
tttgtacattggagttctgtagttatggggaggggtggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97828113_97828318
seq2: B6Ng01-132L18.b_53_258

seq1  CAGTATATGACACGTTCTGTATCATGTGTGACCTTTGAGCATGGCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATATGACACGTTCTGTATCATGTGTGACCTTTGAGCATGGCTCCTT  50

seq1  TCACTGAGTATATGCATCTGGAATTCCTTTCTAAGGGTTCCTGTCACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTATATGCATCTGGAATTCCTTTCTAAGGGTTCCTGTCACTAA  100

seq1  TTCATTTATTTCTATTAAGGAGTAGTAAGTATTCTATGGCATGGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATTTCTATTAAGGAGTAGTAAGTATTCTATGGCATGGATTTTT  150

seq1  GCATACCTTGCTTATCTGTTTCCAAGCTGAAGGAACTGTTTGCGGTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTTGCTTATCTGTTTCCAAGCTGAAGGAACTGTTTGCGGTGGGG  200

seq1  GGGGGG  206
      ||||||
seq2  GGGGGG  206

seq1: chr8_98010302_98011291
seq2: B6Ng01-132L18.g_66_1056 (reverse)

seq1  AAACACACCCCT-CCCATAACTACAGACCTCCAATGTAC-AACTCATACT  48
      |||| ||||||| |||||||||||||| ||||||||||| ||||||||||
seq2  AAAC-CACCCCTCCCCATAACTACAGAACTCCAATGTACAAACTCATACT  49

seq1  TAGCGGGGCCAAGCTCCCTATCTGCCATCATTCCTTCCTTCTCACCCCAG  98
       |||| || ||||||||||||||||||||| |||||||||||||||||||
seq2  AAGCGAGGACAAGCTCCCTATCTGCCATCAATCCTTCCTTCTCACCCCAG  99

seq1  TGTCTTGGGCAGCAGCAATAGCATCACCCATCTCTGCAGCAACTCTGCTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGGGCAGCAGCAATAGCATCACCCATCTCTGCAGCAACTCTGCTC  149

seq1  CTTCATCACTAGGCCAGGATGGTAAGGAGCATTAGCAGCAGCCATTTTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCACTAGGCCAGGATGGTAAGGAGCATTAGCAGCAGCCATTTTTT  199

seq1  TTGAAAGGTGATTCACACAACGCTAAAATCTACACAATTAAATAAGAACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGGTGATTCACACAACGCTAAAATCTACACAATTAAATAAGAACT  249

seq1  GCCCTAAGGCACAAGCTTTTCAATCCTGCATTTTTGTTCACTGGGCACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGGCACAAGCTTTTCAATCCTGCATTTTTGTTCACTGGGCACTG  299

seq1  TGAAAATCTGGTGAAACACTACCACTCTCCAGTGCTCTTTCACTAGTGAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTGGTGAAACACTACCACTCTCCAGTGCTCTTTCACTAGTGAC  349

seq1  ACACATACATGTTAAGTGATCTGACAACATGAAAAACTGCCCAGATCCTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATGTTAAGTGATCTGACAACATGAAAAACTGCCCAGATCCTA  399

seq1  AGGTGACAAGCATATGCATTTAAATGACTTGACAACCATGAAGAACCGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACAAGCATATGCATTTAAATGACTTGACAACCATGAAGAACCGCT  449

seq1  CAGGTCCTACGAACCACCCTCTCGAACAACCTACAAAGCACTATTGAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTACGAACCACCCTCTCGAACAACCTACAAAGCACTATTGAATC  499

seq1  TTCAATCACCTGTACAGAAACTTGGCTGACTCTTCATGCTCATTAAGATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCACCTGTACAGAAACTTGGCTGACTCTTCATGCTCATTAAGATC  549

seq1  ATGTCTTCATTTGAGTGATAACAAAAGCCCTATCATTATCAAAGCGAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCATTTGAGTGATAACAAAAGCCCTATCATTATCAAAGCGAGAG  599

seq1  GGCTAGTCTTGCCACAGAGACAAGTTTTGTTCCAGTTATTATTTCAGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGTCTTGCCACAGAGACAAGTTTTGTTCCAGTTATTATTTCAGGGG  649

seq1  CTAGAATGTACTCTTCTGTTGCCCCAGATCTCTTAGCGGCTGGCTTGCTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATGTACTCTTCTGTTGCCCCAGATCTCTTAGCGGCTGGCTTGCTA  699

seq1  TATCCAGCCCACCTGAAACTTTACTGCTACATGAAATGAAAATATCAACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGCCCACCTGAAACTTTACTGCTACATGAAATGAAAATATCAACT  749

seq1  GAGGGAATTGTCCTGAATTTTTGGCTTTAAACTTATCTCTGAGCAGACTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATTGTCCTGAATTTTTGGCTTTAAACTTATCTCTGAGCAGACTC  799

seq1  CAGTTTTGTTTTGTTTTGGGTTTTCCGGACTTTTTCTGGAGTAACTGGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGTTTTGTTTTGGGTTTTCCGGACTTTTTCTGGAGTAACTGGGA  849

seq1  GCAGAGAGTAACGAGTACAGATTTAGAATCCCTACAGTTGACAGATTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGTAACGAGTACAGATTTAGAATCCCTACAGTTGACAGATTCTC  899

seq1  CATGCAAACTCCTTCCTCTCTTGCGAATACCTCTTTATTCCATATCAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAACTCCTTCCTCTCTTGCGAATACCTCTTTATTCCATATCAGAT  949

seq1  ACAGTCCCCCCTCACAAGCTTTGTTTGAGAAGTTCAGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCCCCTCACAAGCTTTGTTTGAGAAGTTCAGAATTC  991