BAC Information

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BAC

Clone NameB6Ng01-133N19
Chromosome8 (Build37)
Map Location 19,932,550 - 20,015,291
singlet/doubletdoublet
Overlap geneLOC100040599, EG665822, 6820431F20Rik
Upstream geneXkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133N19.bB6Ng01-133N19.g
ACCDH934304DH934305
length1,1691,169
definitionDH934304|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N19, 5' end.DH934305|Mus musculus domesticus DNA, BAC clone: B6Ng01-133N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,932,550 - 19,933,719)(20,014,125 - 20,015,291)
sequence
gaattcttctcactgtgttacaaacatgcccatttttttggtttctttct
tgttgtttccatagtctaatttcctaacacttacattttaacacagtggt
tctcaacctatctgtcatgaccaattggaggaggtgcacagaacaggctc
acacaagttgcctaagaaagtctgaaaacactgataggacattacaactg
ataacattatcaaacctacagttatggagcagcaacaaaaacaattttat
ggttgggagtcaccacaacatgaggaactctattaaagaaagggtcacag
cattagggaggtagggaagcactacctaatacagagcctgacaaggagtg
aggatatgaaggagatgaggggactgttcaagctaggtttctcttccctg
acactacttgcagtactcaaccacaggcacacacatccaacattttcctt
cataacaagcaaatatgttacttatcaaatgggggagaattaacattagg
gatgctttttcttcataagtgttagttattggctctccccaagaacacac
ataaactccagaactccaaaaacccacaaaatccttttgcatcctcctct
gtggtctatgtaaagttttgctagattcttccagcaatgcaaaggtatag
agttaactttttgtttggttgtgaaattaactcttttcttttggggtgca
tgctttcaaatcaactttacttcttagtaatcatgggggtattgacacat
aaaaaataaaaactgtaattaaacatgaaatattttctaatacgcttatc
tattttcaaattgctaggatatcatcaagatgtaaaaatatttaggctag
actagattaagagaaaatcatgaaatgagaaacaggatattgttcttccc
gggttgagactaagcttaattcattatgtgccaaattttctccatcttat
ataagatgatcattaacattgctaaaacttcttttggcattctttctcct
catgctggggggaacaaatgcacaagttaccattttaaataaatgccagt
taaatgccactgctattcctatcatagtactggtggactacttaaaggaa
acacattgggatcacctagtcacaattcaaaatcattaaaatgttcacta
tcagttcaccattcccctc
gaattctatgttagtgcgtcctaatgaagttctatatgagcaggcctact
agctgaccttagaccattaccaagggttgaaaactacaatccaggaatgg
ctgcctcagcactgacccacagacagacgcttgtatacagagaggcattt
aatgatatatttctgtccttttattttagaggagaattttgatcctaagg
aagaatactttgtctaagttgcaccgttatgtactaacagaacttatatt
atagcatactcatcttcccttatggtctagagatctttggcccaatggcc
tttggaaattcagagatttaaaaaaaaaatggcattttatacaattgcac
taatgatcttcacagtggcaatatttcacagttggccaaaaaaagaactg
ccaatttatttctttaagattaccataaatttctatatttgctgtttggg
tgatgaaagaaagttcccaggctaactcatgcacaggaggtacactgtca
tcttataggtagggtgctgacaaacagcttagggcccatggtggcagcaa
agaagcatagtcgcctaggtcttcagagaaatgagatcacgtgttctgcc
atttgcatggtttggggagagagagatgctatagtttgacttttgcttct
aactagtttggttgttgccttgatcttattgaaatctgaacaattggata
ttactttgtagctactctatgctttaggtgcctcctaacctgactttgca
aggcctttcactagttacaaatattttctgtcgtttttcattgaagttct
tggaaaatctggttcccatagccaatcatttgaatacaggtcgccctggc
cgcaatgatcaatggttagtttatggtttacttgtcagaacagcaggaaa
ggtttcatcagccatacctcagagaaggagtaggtaaggcattggagact
atggacaagcttgtttgcttgggaagaggccacaagattaccacggtgtt
acaagttcatctgccaaactgattctggttgtggatgcttttgtttgtag
ggttggtagatccactcattctccgaagacttttaccaagttccttaatt
tttcctagcatcaaacacactgaatccctagtatacaccgagaccattca
gactggaccctggaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19932550_19933719
seq2: B6Ng01-133N19.b_46_1214

seq1  GAATTCTTCTCACTGTGTTACAAACATGCCCATTTTTTTGGTTTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCACTGTGTTACAAACATGCCCATTTTTTTGGTTTCTTTCT  50

seq1  TGTTGTTTCCATAGTCTAATTTCCTAACACTTACATTTTAACACAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTCCATAGTCTAATTTCCTAACACTTACATTTTAACACAGTGGT  100

seq1  TCTCAACCTATCTGTCATGACCAATTGGAGGAGGTGCACAGAACAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCTATCTGTCATGACCAATTGGAGGAGGTGCACAGAACAGGCTC  150

seq1  ACACAAGTTGCCTAAGAAAGTCTGAAAACACTGATAGGACATTACAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTGCCTAAGAAAGTCTGAAAACACTGATAGGACATTACAACTG  200

seq1  ATAACATTATCAAACCTACAGTTATGGAGCAGCAACAAAAACAATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTATCAAACCTACAGTTATGGAGCAGCAACAAAAACAATTTTAT  250

seq1  GGTTGGGAGTCACCACAACATGAGGAACTCTATTAAAGAAAGGGTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAGTCACCACAACATGAGGAACTCTATTAAAGAAAGGGTCACAG  300

seq1  CATTAGGGAGGTAGGGAAGCACTACCTAATACAGAGCCTGACAAGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGGAGGTAGGGAAGCACTACCTAATACAGAGCCTGACAAGGAGTG  350

seq1  AGGATATGAAGGAGATGAGGGGACTGTTCAAGCTAGGTTTCTCTTCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGAAGGAGATGAGGGGACTGTTCAAGCTAGGTTTCTCTTCCCTG  400

seq1  ACACTACTTGCAGTACTCAACCACAGGCACACACATCCAACATTTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTTGCAGTACTCAACCACAGGCACACACATCCAACATTTTCCTT  450

seq1  CATAACAAGCAAATATGTTACTTATCAAATGGGGGAGAATTAACATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAAGCAAATATGTTACTTATCAAATGGGGGAGAATTAACATTAGG  500

seq1  GATGCTTTTTCTTCATAAGTGTTAGTTATTGGCTCTCCCCAAGAACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTTTCTTCATAAGTGTTAGTTATTGGCTCTCCCCAAGAACACAC  550

seq1  ATAAACTCCAGAACTCCAAAAACCCACAAAATCCTTTTGCATCCTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTCCAGAACTCCAAAAACCCACAAAATCCTTTTGCATCCTCCTCT  600

seq1  GTGGTCTATGTAAAGTTTTGCTAGATTCTTCCAGCAATGCAAAGGTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTATGTAAAGTTTTGCTAGATTCTTCCAGCAATGCAAAGGTATAG  650

seq1  AGTTAACTTTTTGTTTGGTTGTGAAATTAACTCTTTTCTTTTGGGGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTTTTTGTTTGGTTGTGAAATTAACTCTTTTCTTTTGGGGTGCA  700

seq1  TGCTTTCAAATCAACTTTACTTCTTAGTAATCAT-GGGGTATTGACACAT  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCTTTCAAATCAACTTTACTTCTTAGTAATCATGGGGGTATTGACACAT  750

seq1  AAAAAATAAAAACTGTAATTAAACATGAAATATTTTCTAATACGCTTATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAACTGTAATTAAACATGAAATATTTTCTAATACGCTTATC  800

seq1  TATTTTCAAATTGCTAGGATATCATCAAGATGTAAAAATATTTAGGCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAAATTGCTAGGATATCATCAAGATGTAAAAATATTTAGGCTAG  850

seq1  ACTAGATTAAGAGAAAATCATGAAATGAGAAACAGGATATTGTTCTT-CC  898
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTAGATTAAGAGAAAATCATGAAATGAGAAACAGGATATTGTTCTTCCC  900

seq1  GGGTTGAGACTAAGCTTAATTCATTATGTGCCAAATTTTCTCCATCTTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGACTAAGCTTAATTCATTATGTGCCAAATTTTCTCCATCTTAT  950

seq1  ATAAGATGATCATTAACATTGCTAAAACCTCTTTTGGCATTCTTTCTCCT  998
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAAGATGATCATTAACATTGCTAAAACTTCTTTTGGCATTCTTTCTCCT  1000

seq1  CCATTGCTGGGGGGAACAAAATGCACAGTTTACCATTTTAAATAAATGCC  1048
      |   ||||||||||||| |||||||||  |||||||||||||||||||||
seq2  C--ATGCTGGGGGGAAC-AAATGCACAAGTTACCATTTTAAATAAATGCC  1047

seq1  AGTTAAATTGCCACTGCTATCCTTATCATAGTACCTGTGGAACTACTTTA  1098
      ||||||| |||||||||||| | |||||||||||  |||| ||||||| |
seq2  AGTTAAA-TGCCACTGCTATTCCTATCATAGTACTGGTGG-ACTACTTAA  1095

seq1  TAGAAACACATT-GGATCACTTAGTCACATTCAAAAATCATTAAAATG-T  1146
        |||||||||| ||||||| |||||||| |  ||||||||||||||| |
seq2  AGGAAACACATTGGGATCACCTAGTCACAATTCAAAATCATTAAAATGTT  1145

seq1  CACTTATCAG-TCACACATCCCCTC  1170
      ||| |||||| ||||   |||||||
seq2  CAC-TATCAGTTCACCATTCCCCTC  1169

seq1: chr8_20014125_20015291
seq2: B6Ng01-133N19.g_67_1235 (reverse)

seq1  TTCATT-CAGGGTCAAGTCTGGATGGGTCTCGGTG-ATACATAGGAATCA  48
      |||||| ||||||| |||||| || |||||||||| ||||   ||| |||
seq2  TTCATTCCAGGGTCCAGTCTGAAT-GGTCTCGGTGTATACTAGGGATTCA  49

seq1  GTGTGTTTTTGATGCTTAG-ACAATTATAGAACTTGGTAAAAGTCTTCGA  97
      |||||  |||||||||  | | |||||  |||||||||||||||||||| 
seq2  GTGTG--TTTGATGCTAGGAAAAATTAAGGAACTTGGTAAAAGTCTTCGG  97

seq1  GGAATGAGTGGATCTAACAACACTACAAAC-AAAGCATCCAACAACCAGA  146
       ||||||||||||||| |||| |||||||| ||||||||| |||||||||
seq2  AGAATGAGTGGATCTACCAACCCTACAAACAAAAGCATCC-ACAACCAGA  146

seq1  ATCAGTTTGGCAGATGAACTTGTAACACCGTGGTTATTCTTGTGGCCTCT  196
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  ATCAGTTTGGCAGATGAACTTGTAACACCGTGG-TAATCTTGTGGCCTCT  195

seq1  T-CCAAGCAAACAAGCTTGTCCATAGTCTCCAATGCCTTACCTACTCCTT  245
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCAAACAAGCTTGTCCATAGTCTCCAATGCCTTACCTACTCCTT  245

seq1  CTCTGAGGTATGGCTGATGAAACCTTTCCTGCTGTTCTGACAAGTAAACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTATGGCTGATGAAACCTTTCCTGCTGTTCTGACAAGTAAACC  295

seq1  ATAAACTAACCATTGATCATTGCGGCCAGGGCGACCTGTATTCAAATGAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAACCATTGATCATTGCGGCCAGGGCGACCTGTATTCAAATGAT  345

seq1  TGGCTATGGGAACCAGATTTTCCAAGAACTTCAATGAAAAACGACAGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGGGAACCAGATTTTCCAAGAACTTCAATGAAAAACGACAGAAA  395

seq1  ATATTTGTAACTAGTGAAAGGCCTTGCAAAGTCAGGTTAGGAGGCACCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGTAACTAGTGAAAGGCCTTGCAAAGTCAGGTTAGGAGGCACCTA  445

seq1  AAGCATAGAGTAGCTACAAAGTAATATCCAATTGTTCAGATTTCAATAAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAGAGTAGCTACAAAGTAATATCCAATTGTTCAGATTTCAATAAG  495

seq1  ATCAAGGCAACAACCAAACTAGTTAGAAGCAAAAGTCAAACTATAGCATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGCAACAACCAAACTAGTTAGAAGCAAAAGTCAAACTATAGCATC  545

seq1  TCTCTCTCCCCAAACCATGCAAATGGCAGAACACGTGATCTCATTTCTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCCAAACCATGCAAATGGCAGAACACGTGATCTCATTTCTCT  595

seq1  GAAGACCTAGGTGACTATGCTTCTTTGCTGCCACCATGGGCCCTAAGCTG  645
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCTAGGCGACTATGCTTCTTTGCTGCCACCATGGGCCCTAAGCTG  645

seq1  TTTGTCAGCACCCTACCTATAAGATGACAGTGTACCTCCTGTGCATGAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTGTCAGCACCCTACCTATAAGATGACAGTGTACCTCCTGTGCATGAGT  695

seq1  TAGCCTGGGAACTTTCTTTCATCACCCAAACAGCAAATATAGAAATTTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGGAACTTTCTTTCATCACCCAAACAGCAAATATAGAAATTTAT  745

seq1  GGTAATCTTAAAGAAATAAATTGGCAGTTCTTTTTTTGGCCAACTGTGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCTTAAAGAAATAAATTGGCAGTTCTTTTTTTGGCCAACTGTGAA  795

seq1  ATATTGCCACTGTGAAGATCGTTAGTGCAATTGTATAAAATGCCATTTTT  845
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATATTGCCACTGTGAAGATCATTAGTGCAATTGTATAAAATGCCATTTTT  845

seq1  TTTT--AATCTCTGAATTTCCAAAGGCCATTGGGCCAAAGATCTCTAGAC  893
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCTCTGAATTTCCAAAGGCCATTGGGCCAAAGATCTCTAGAC  895

seq1  CATAAGGGAAGATGTGTATGCTATAATATAAGTTCTGTTAGTACATAACG  943
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATAAGGGAAGATGAGTATGCTATAATATAAGTTCTGTTAGTACATAACG  945

seq1  GTGCAACTTAGACAAAGTATTCTTCCTTAGGATCAAAATTCTCCTCTAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTTAGACAAAGTATTCTTCCTTAGGATCAAAATTCTCCTCTAAA  995

seq1  ATAAAAGGACAGGAATATATCATTAAATGCCTCTCTGTATACAAGCGTCT  1043
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGACAGAAATATATCATTAAATGCCTCTCTGTATACAAGCGTCT  1045

seq1  GTCTGTGGGTCAGTGCTGAGGCAGCCATTCCTGGATTGTAGTTTTCAACC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGGTCAGTGCTGAGGCAGCCATTCCTGGATTGTAGTTTTCAACC  1095

seq1  CTTGGTAATGGTCTAAGGTCAGCTAGTAGGCCTGCTCATATAGAACTTCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAATGGTCTAAGGTCAGCTAGTAGGCCTGCTCATATAGAACTTCA  1145

seq1  TTAGGACGCACTAACATAGAATTC  1167
      ||||||||||||||||||||||||
seq2  TTAGGACGCACTAACATAGAATTC  1169