BAC Information

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BAC

Clone NameB6Ng01-134E02
Chromosome8 (Build37)
Map Location 9,346,058 - 9,485,191
singlet/doubletdoublet
Overlap geneTmem28
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134E02.bB6Ng01-134E02.g
ACCDH934600DH934601
length1,0941,051
definitionDH934600|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E02, 5' end.DH934601|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,346,058 - 9,347,166)(9,484,142 - 9,485,191)
sequence
gaattcagagaaaatgtacatagagaggttagtcatggcaggcaaggtgc
tatcctgaagtataagtgagattctaaatggaactgagtctcaactaagc
caaggtgcttacatctcgtaagaaaccagataatgtgcttcttcacttca
atataaaacccactgcagctatccaatccacttgtggaaaaactgctaat
gagagagatatcacaccctttcacactgagaaaactgctggaggcttagt
cgcaatctaccaagatcagctaatctttctgttttttagagtatggaaat
ttccagcccaagaaaagtgaagagaattctgtgtgaatcctcatggacct
accacctggctcacctcacaccacctgacatttgctccagatcctgtaca
cctctgagttattttgaacatcagcttatatataaataacactgtttttt
gtaaaaaaaaaaaaagtattttgacacattttattatttttttaaagtaa
gctcaaaaattcattagcagaaattctgtcaagttgcatagctcatgaat
aaatgggtgaggtaaattatgggtctttgggatttcttgttattagaatg
tgatccatcgacactgaatgatcaaccaaagacaagtctgttgatatgtg
ataagagactctgatcatggcattcacatgatcatgaaaaaaaaatggct
ctatttgattcctagaattttcacgttaggagcaaaataccagtctttgg
cttaatgctgcacaaatatgttgtgtctttagctcagtggggaggaagcc
tgaaagtaaggagttgctaaggctgccgtcctggcttcctccctcctgtc
cgtcacctgtagggtcaaatctctgtctcagcttctgctggccaccagaa
gtctttactgtccttggcttgcaactacatcagcttttgctgtctcgtca
caattttctgttcttatttgggacatcagcaaaaggagattgagcttttt
tatgactacacaactgaattatctacagactttatctcaaatgagtttca
cattctgggatcatgactcatgcacgttggaaacacaattcagc

gaattcacttctgaaaagattgtgctttggcttttaaactaatatttggg
tattttgttaagtatcacttgtttataatgcaagcagagtgatttttaac
tcgtgatttaactagtgatttaactagtgatttaactagtgatttaacta
gtgtttgcattgtggttctttaacaaagatagaggggaagctgaacagtt
gttttcaaaatgccaggactggatgcttgttaattcaaatgaaaagaatg
gacaaagatggctgctctatattatcctaaagcagaagccaaacaaagct
atggcttctagtgctcttgaaataaaatttaaaatattaaatagtgctag
catctaacaaagaaacctgtgctggcaaatttcctaagtgattccctcaa
atcaaaattcaaattttattctcagtttttacagtagccatgggtgagtg
attcatgtgcagttttcatttcattttcgactaacatggtatgttaatga
aaatccatgaatacagaccacactgaatcatagatcaaaccaatgaatgg
atctggttgtgtggtcatattgatatagagaacttgttctttcttggggg
agtgaggtgccaggagaagtcttttttttttttttgtaatgggaatacat
ttggactaagttctaactaaacttatattcattgattttgtgtttgatat
gtcatacaatggacttacttgaagtaatttttcagacggattggctttat
gatctgtaggctatttcacaggaacagatccctatgatatgttgacatca
gggtacagcaggtgttcaaagttctacattacataatgccaacttcattg
tacccactccagggaagatgcataaattgatgctttaaattcaatcacct
atcagtaagcaatgggtttgtttccatggtttgggctactatgaagttgt
gctgtgaattatccacacatcatttttatcgcccacctgtactgtacttc
taaaagtatatccaatcagaccctctgggatcactgtaccctttgaaata
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9346058_9347166
seq2: B6Ng01-134E02.b_49_1142

seq1  GAATTCAGAGAAAATGTACATAGAGAGGTTAGTCATGGCAGGCAAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAAATGTACATAGAGAGGTTAGTCATGGCAGGCAAGGTGC  50

seq1  TATCCTGAAGTATAAGTGAGATTCTAAATGGAACTGAGTCTCAACTAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGAAGTATAAGTGAGATTCTAAATGGAACTGAGTCTCAACTAAGC  100

seq1  CAAGGTGCTTACATCTCGTAAGAAACCAGATAATGTGCTTCTTCACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGCTTACATCTCGTAAGAAACCAGATAATGTGCTTCTTCACTTCA  150

seq1  ATATAAAACCCACTGCAGCTATCCAATCCACTTGTGGAAAAACTGCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACCCACTGCAGCTATCCAATCCACTTGTGGAAAAACTGCTAAT  200

seq1  GAGAGAGATATCACACCCTTTCACACTGAGAAAACTGCTGGAGGCTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGATATCACACCCTTTCACACTGAGAAAACTGCTGGAGGCTTAGT  250

seq1  CGCAATCTACCAAGATCAGCTAATCTTTCTGTTTTTTAGAGTATGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAATCTACCAAGATCAGCTAATCTTTCTGTTTTTTAGAGTATGGAAAT  300

seq1  TTCCAGCCCAAGAAAAGTGAAGAGAATTCTGTGTGAATCCTCATGGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCCAAGAAAAGTGAAGAGAATTCTGTGTGAATCCTCATGGACCT  350

seq1  ACCACCTGGCTCACCTCACACCACCTGACATTTGCTCCAGATCCTGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGGCTCACCTCACACCACCTGACATTTGCTCCAGATCCTGTACA  400

seq1  CCTCTGAGTTATTTTGAACATCAGCTTATATATAAATAACACTGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGTTATTTTGAACATCAGCTTATATATAAATAACACTGTTTTTT  450

seq1  GTAAAAAAAAAAAAAGTATTTTGACACATTTTATTATTTTTTTAAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAAAAAGTATTTTGACACATTTTATTATTTTTTTAAAGTAA  500

seq1  GCTCAAAAATTCATTAGCAGAAATTCTGTCAAGTTGCATAGCTCATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAAATTCATTAGCAGAAATTCTGTCAAGTTGCATAGCTCATGAAT  550

seq1  AAATGGGTGAGGTAAATTATGGGTCTTTGGGATTTCTTGTTATTAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTGAGGTAAATTATGGGTCTTTGGGATTTCTTGTTATTAGAATG  600

seq1  TGATCCATCGACACTGAATGATCAACCAAAGACAAGTCTGTTGATATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCGACACTGAATGATCAACCAAAGACAAGTCTGTTGATATGTG  650

seq1  ATAAGAGACTCTGATCATGGCATTCACATGATCATGAAAAAAAAATGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGACTCTGATCATGGCATTCACATGATCATGAAAAAAAAATGGCT  700

seq1  CTATTTGATTCCTAGAATTTTCACGTTAGGAGCAAAATACCAGTCTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGATTCCTAGAATTTTCACGTTAGGAGCAAAATACCAGTCTTTGG  750

seq1  CTTAATGCTGCACAAATATGTTGTGTC-TTAGCTCAGTGGGGAGGAAGCC  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTAATGCTGCACAAATATGTTGTGTCTTTAGCTCAGTGGGGAGGAAGCC  800

seq1  TGAAAGTAAGGAGTTGCTAAGGCTGCCGTCCTGGCTTCCT-CCTCCTGTC  848
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAAAGTAAGGAGTTGCTAAGGCTGCCGTCCTGGCTTCCTCCCTCCTGTC  850

seq1  CGTCACCTGTAGGGTCAAATCTCTGTCTCAGCTTCTGCTGGCAACCAGAA  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGTCACCTGTAGGGTCAAATCTCTGTCTCAGCTTCTGCTGGCCACCAGAA  900

seq1  GTCTTTACTGTCCTTGGCTTGCAACTACATCAGCTTTTGCTGTCTCGTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTGTCCTTGGCTTGCAACTACATCAGCTTTTGCTGTCTCGTCA  950

seq1  CAATTTTCTGTTCTTATTT-GGACATCAGCAAAAGGAGATTGGAGCTTTT  997
      ||||||||||||||||||| ||||||||||||||||||||| ||||||| 
seq2  CAATTTTCTGTTCTTATTTGGGACATCAGCAAAAGGAGATT-GAGCTTT-  998

seq1  CTTAATGACCTTACACCAACTGAATTATCTACAAGGACTTTATCTCCAAA  1047
       || |||||  |||| |||||||||||||||||  |||||||||| ||||
seq2  -TTTATGAC--TACA-CAACTGAATTATCTACA--GACTTTATCT-CAAA  1041

seq1  TGAGGTTTCACATTCTGGGGATCAATGACTCAATGCACCCGTTTGGGAAA  1097
      ||| |||||||||||| |||||| ||||||| |||||  ||||   | ||
seq2  TGA-GTTTCACATTCT-GGGATC-ATGACTC-ATGCA--CGTT---GGAA  1082

seq1  ACACAATTCAGC  1109
      ||||||||||||
seq2  ACACAATTCAGC  1094


seq1: chr8_9484142_9485191
seq2: B6Ng01-134E02.g_68_1118 (reverse)

seq1  GTATTTCAAGAGTTACCAAGTGATCCCAGAGTGTTCCTGA-TAGATATGA  49
      |||||||||  | |||  ||||||||||||| ||  |||| | ||||| |
seq2  GTATTTCAAAGGGTAC--AGTGATCCCAGAGGGT--CTGATTGGATAT-A  45

seq1  CTTTTAGCAGTACAGTACAGGTGTGGCGATAAAAATG-TGTGTTGAATAT  98
      ||||||| ||||||||||||||| ||||||||||||| ||||| ||  ||
seq2  CTTTTAGAAGTACAGTACAGGTG-GGCGATAAAAATGATGTGTGGATAAT  94

seq1  TCACAGCACAAC-TCATAGTAGCC--AAACATGGAAACAAACCAAATGCT  145
      |||||||||||| |||||||||||  || |||||||||||||| | ||||
seq2  TCACAGCACAACTTCATAGTAGCCCAAACCATGGAAACAAACCCATTGCT  144

seq1  TACTGATAGGTGATTGAATTTTAAAGCATC-ATTTATGCATCTTCCCTGG  194
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  TACTGATAGGTGATTGAA-TTTAAAGCATCAATTTATGCATCTTCCCTGG  193

seq1  AGTGGGTACAATGAAGTTGGCATTATGTAATGTAGAACCTTGAACACCTG  244
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGGGTACAATGAAGTTGGCATTATGTAATGTAGAACTTTGAACACCTG  243

seq1  CTGTACCCTGATGTC-ACATATCATAGGGATCTGTTCCTGTGAAATAGCC  293
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGTACCCTGATGTCAACATATCATAGGGATCTGTTCCTGTGAAATAGCC  293

seq1  TACAGATCATAAAGCCAATCCGTCTGAAAAATTACTTCAAGTAAGTCCAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCATAAAGCCAATCCGTCTGAAAAATTACTTCAAGTAAGTCCAT  343

seq1  TGTATGACATATCAAACAC-AAATCAATGAATATAAGTTTAGTTAGAACT  392
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTATGACATATCAAACACAAAATCAATGAATATAAGTTTAGTTAGAACT  393

seq1  TAGTCCAAATGTATTCCCATTACAAAAAAAAAAAAAAGACTTCTCCTGGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAAATGTATTCCCATTACAAAAAAAAAAAAAAGACTTCTCCTGGC  443

seq1  ACCTCACTCCCCCAAGAAAGAACAAGTTCTCTATATCAATATGACCACAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTCCCCCAAGAAAGAACAAGTTCTCTATATCAATATGACCACAC  493

seq1  AACCAGATCCATTCATTGGTTTGATCTATGATTCAGTGTGGTCTGTATTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATCCATTCATTGGTTTGATCTATGATTCAGTGTGGTCTGTATTC  543

seq1  ATGGATTTTCATTAACATACCATGTTAGTCGAAAATGAAATGAAAACTGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTTCATTAACATACCATGTTAGTCGAAAATGAAATGAAAACTGC  593

seq1  ACATGAATCACTCACCCATGGCTACTGTAAAAACTGAGAATAAAATTTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATCACTCACCCATGGCTACTGTAAAAACTGAGAATAAAATTTGA  643

seq1  ATTTTGATTTGAGGGAATCACTTAGGAAATTTGCCAGCACAGGTTTCTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTTGAGGGAATCACTTAGGAAATTTGCCAGCACAGGTTTCTTT  693

seq1  GTTAGATGCTAGCACTATTTAATATTTTAAATTTTATTTCAAGAGCACTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATGCTAGCACTATTTAATATTTTAAATTTTATTTCAAGAGCACTA  743

seq1  GAAGCCATAGCTTTGTTTGGCTTCTGCTTTAGGATAATATAGAGCAGCCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCATAGCTTTGTTTGGCTTCTGCTTTAGGATAATATAGAGCAGCCA  793

seq1  TCTTTGTCCATTCTTTTCATTTGAATTAACAAGCATCCAGTCCTGGCATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCCATTCTTTTCATTTGAATTAACAAGCATCCAGTCCTGGCATT  843

seq1  TTGAAAACAACTGTTCAGCTTCCCCTCTATCTTTGTTAAAGAACCACAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACAACTGTTCAGCTTCCCCTCTATCTTTGTTAAAGAACCACAAT  893

seq1  GCAAACACTAGTTAAATCACTAGTTAAATCACTAGTTAAATCACTAGTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACTAGTTAAATCACTAGTTAAATCACTAGTTAAATCACTAGTTA  943

seq1  AATCACGAGTTAAAAATCACTCTGCTTGCATTATAAACAAGTGATACTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGAGTTAAAAATCACTCTGCTTGCATTATAAACAAGTGATACTTA  993

seq1  ACAAAATACCCAAATATTAGTTTAAAAGCCAAAGCACAATCTTTTCAGAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATACCCAAATATTAGTTTAAAAGCCAAAGCACAATCTTTTCAGAA  1043

seq1  GTGAATTC  1050
      ||||||||
seq2  GTGAATTC  1051


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