BAC Information

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BAC

Clone NameB6Ng01-134E11
Chromosome8 (Build37)
Map Location 18,398,018 - 18,526,381
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-134E11.bB6Ng01-134E11.g
ACCDH934618DH934619
length1,1121,066
definitionDH934618|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E11, 5' end.DH934619|Mus musculus domesticus DNA, BAC clone: B6Ng01-134E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,398,018 - 18,399,142)(18,525,317 - 18,526,381)
sequence
gaattcatttggtagtcttcttctggcttcagaaatgaatatgatccatt
gatctgctgagatatatttggatatatcttggcaacacccatcaaggctg
tctaaagagagaacagtgggcaccactggaggtcatgttagggcacacag
tagaaatggaggatgaattctcaccttgaaacatcgcagcagcattcttt
acaccttttcttctcccagaaaatatgttctctcctcttgtgaacatggc
tccccagctctgagactagatttgttttcactctccttagtaagtgatag
aaactgcagaacaatgcttccctgagctttgacaacaatcgtgatgtctg
tgatctgattttgcatgcttggctatgtaggtgcagttactggcagtgtg
tctcatatggtaactatgtcttctgcctagcaaggcagagttgaattaaa
ctaggggtgtgaggacttctgcccaagtactaattaggcttgatcctgca
tatcttgggagtttgaaagagattgggcacattcagagtgatatggccat
attgggcaaggggatttttaatgacctcccttattgcacctggatgggga
gggactgcaggggatgttaattatctggttctttccttctattgtcttag
ggactgtcttggttagagttttactacctttaacagacaccatgaccaaa
gcaactcatataaagacaaaatttaattgggtctggcttacaggttcaga
ggttcagtccattatcatcaagacaggaatatgacagcatgcaggcaggc
atggtgcagaggagctgagaattctacatctttatcttaaagctgctagt
agaatactggcttccaggcagctaggagtaaagtcttaaagcccacatcc
acagtggtacacctaccaacaagaacacacctactccaactaggacacac
ctccaaaatagtgccacttccttgggccagcatatacaaccattcacagg
aacataagtaaacacacttggcactggtacaacaggatcatgaacatgag
tataactacaaaaattcatctttcatattgctaattattaatatataata
aggtccattcca
gaattcactctgttgtcttaggctaagaagttaacagtgagcttctgtcg
ctgtctcatgaattccaaacaccctgggaaacatttagtagatttgaatc
aaagcgaatgaaaccgttcattagaagatgccacaaaatactagctctaa
gtgctgctcagctgtgtccttttctgctttcagactttttcccttttaag
caggaggatgtctctcagcttatggtgggtttcagaaaaacattgtgggc
atgatggctgatttcagcatggtgaagtggcagagcgggaagcattggtg
agaacagatgtgacaacactgagcacaggcatgtgacacaatcacctgtc
atccaaatcctagtacagtacttatcaactatacacattcaacacaatgc
tatccaataagttaacaaatgcaggcccatggcatcaaaatatccacata
tgtcctgtagactcctttctcctctgcctctctggggttgaccagataga
cattgcacaatctggtcctaggaatggacttcctgccatctttgggatgt
taagactgctgtctttttcctctgtgggagaatccagggaagtttctgaa
gatttactgtcatagtcattctggttgtctatattcctgtcacattgcac
ctcaaaacttaccggcttaatgattttattacgaacacaggctatcttgg
taattcttgttctccagatagactgtctgtctttccttctatatctgatg
ggagaacaggtttgaagggcccatgtggctttctttccatacttgcttcc
ttggtagagatagaggggaggctggcatcagctaggacagaaggaagagc
atctaccatgactctcaagcatcttgtcctccagtaagtagaggacagac
catctgcttttgaagtctgaacagataacattttgttttgttctatgagt
caaatggctaggagctcagctatgtctcagggcagacacatcaacctgca
ttggatggaagtgtgtaaaataaaatgttggccttctttctccctctctc
ctctccctctcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18398018_18399142
seq2: B6Ng01-134E11.b_49_1160

seq1  GAATTCATTTGGTAGTCTTCTTCTGGCTTCAGAAATGAATATGATCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGGTAGTCTTCTTCTGGCTTCAGAAATGAATATGATCCATT  50

seq1  GATCTGCTGAGATATATTTGGATATATCTTGGCAACACCCATCAAGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTGAGATATATTTGGATATATCTTGGCAACACCCATCAAGGCTG  100

seq1  TCTAAAGAGAGAACAGTGGGCACCACTGGAGGTCATGTTAGGGCACACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGAGAGAACAGTGGGCACCACTGGAGGTCATGTTAGGGCACACAG  150

seq1  TAGAAATGGAGGATGAATTCTCACCTTGAAACATCGCAGCAGCATTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGGAGGATGAATTCTCACCTTGAAACATCGCAGCAGCATTCTTT  200

seq1  ACACCTTTTCTTCTCCCAGAAAATATGTTCTCTCCTCTTGTGAACATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTTCTTCTCCCAGAAAATATGTTCTCTCCTCTTGTGAACATGGC  250

seq1  TCCCCAGCTCTGAGACTAGATTTGTTTTCACTCTCCTTAGTAAGTGATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCTCTGAGACTAGATTTGTTTTCACTCTCCTTAGTAAGTGATAG  300

seq1  AAACTGCAGAACAATGCTTCCCTGAGCTTTGACAACAATCGTGATGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAGAACAATGCTTCCCTGAGCTTTGACAACAATCGTGATGTCTG  350

seq1  TGATCTGATTTTGCATGCTTGGCTATGTAGGTGCAGTTACTGGCAGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGATTTTGCATGCTTGGCTATGTAGGTGCAGTTACTGGCAGTGTG  400

seq1  TCTCATATGGTAACTATGTCTTCTGCCTAGCAAGGCAGAGTTGAATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATGGTAACTATGTCTTCTGCCTAGCAAGGCAGAGTTGAATTAAA  450

seq1  CTAGGGGTGTGAGGACTTCTGCCCAAGTACTAATTAGGCTTGATCCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGTGTGAGGACTTCTGCCCAAGTACTAATTAGGCTTGATCCTGCA  500

seq1  TATCTTGGGAGTTTGAAAGAGATTGGGCACATTCAGAGTGATATGGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGGAGTTTGAAAGAGATTGGGCACATTCAGAGTGATATGGCCAT  550

seq1  ATTGGGCAAGGGGATTTTTAATGACCTCCCTTATTGCACCTGGATGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCAAGGGGATTTTTAATGACCTCCCTTATTGCACCTGGATGGGGA  600

seq1  GGGACTGCAGGGGATGTTAATTATCTGGTTCTTTCCTTCTATTGTCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGCAGGGGATGTTAATTATCTGGTTCTTTCCTTCTATTGTCTTAG  650

seq1  GGACTGTCTTGGTTAGAGTTTTACTACCTTTAACAGACACCATGACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTCTTGGTTAGAGTTTTACTACCTTTAACAGACACCATGACCAAA  700

seq1  GCAACTCATATAAAGACAAAATTTAATTGGGTCTGGCTTACAGGTTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCATATAAAGACAAAATTTAATTGGGTCTGGCTTACAGGTTCAGA  750

seq1  GGTTCAGTCCATTATCATCAAGACAGGAATATGACAGCATGCAGGCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGTCCATTATCATCAAGACAGGAATATGACAGCATGCAGGCAGGC  800

seq1  ATGGTGCAGGAGGAGCTGAGAATTCTACATCTTTATCTTAAGGCTGCTAG  850
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGTGCA-GAGGAGCTGAGAATTCTACATCTTTATCTTAAAGCTGCTAG  849

seq1  TAGAATACTGGCTTCCAGGCAGCTAGGAGTAAGGTCTTAAAGCCCACATC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGAATACTGGCTTCCAGGCAGCTAGGAGTAAAGTCTTAAAGCCCACATC  899

seq1  CACAGTGGTACACCTACCAACAAGAACACACCTACTCCAACTAGGACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGTACACCTACCAACAAGAACACACCTACTCCAACTAGGACACA  949

seq1  CCTCCAAAATAGTGCCACTCCCTGGGCCAAGCATATACAAACCATCACAG  1000
      ||||||||||||||||||| ||| || | ||||||||||| |  ||||| 
seq2  CCTCCAAAATAGTGCCACTTCCTTGGGCCAGCATATACAACCATTCACA-  998

seq1  GGACCATAAGTAAAACACACTTGGCACTTGGTACAAACAGATCATGAACA  1050
      ||| ||||||| ||||||||||||||| ||||||||   |||||||||||
seq2  GGAACATAAGT-AAACACACTTGGCAC-TGGTACAACAGGATCATGAACA  1046

seq1  TGAGTATAACTACAAAAATATCATCCTTCATATTTGCTAAAATTTTTATT  1100
      ||||||||||||||||||| ||||| |||||| |||||||     |||||
seq2  TGAGTATAACTACAAAAAT-TCATCTTTCATA-TTGCTAA-----TTATT  1089

seq1  AATATATAATAAGTGTCCATATCCA  1125
      ||||||||||||| |||||| ||||
seq2  AATATATAATAAG-GTCCAT-TCCA  1112

seq1: chr8_18525317_18526381
seq2: B6Ng01-134E11.g_68_1133 (reverse)

seq1  GAGAAGAGA---AGAGAAGAGAG---AAAAGAAGGCC-ACATTTTATTTT  43
      |||||||||   |||| ||||||    |||||||||| ||||||||||||
seq2  GAGAAGAGAGGGAGAGGAGAGAGGGAGAAAGAAGGCCAACATTTTATTTT  50

seq1  ACACACCTTCCATCCAATGGCAGGTTTGATGTTGTCTGCCCTGAGACATA  93
      ||||| |||||||||||| ||||| |||||| ||||||||||||||||||
seq2  ACACA-CTTCCATCCAAT-GCAGG-TTGATG-TGTCTGCCCTGAGACATA  96

seq1  GCTGAGCTCCCTAGCCATTTGACTCATAGAACAAAACAAAATGTTATCTG  143
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCT-CCTAGCCATTTGACTCATAGAACAAAACAAAATGTTATCTG  145

seq1  TTCAGACTTCAAAAGCAGATGGTCTTGTCCTCTACTTACTGGAGGACAAG  193
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTCAGACTTCAAAAGCAGATGGTC-TGTCCTCTACTTACTGGAGGACAAG  194

seq1  ATGCTTGAGAGTCATGGTAGATGCTCTTCCTTCTGTCCTAGCTGATGCCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGAGAGTCATGGTAGATGCTCTTCCTTCTGTCCTAGCTGATGCCA  244

seq1  GCCTCCCCTCTATCTCTACCAAGGCAGCAAGTATGGAAAGAAAGCCACAT  293
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCCTCCCCTCTATCTCTACCAAGGAAGCAAGTATGGAAAGAAAGCCACAT  294

seq1  GGGCCCTTCAAACCTGTTCTCCCATCAGATATAGAAGGAAAGACAGACAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTTCAAACCTGTTCTCCCATCAGATATAGAAGGAAAGACAGACAG  344

seq1  TCTATCTGGAGAACAAGAATTACCAAGATAGCCTGTGTTCGTAATAAAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGGAGAACAAGAATTACCAAGATAGCCTGTGTTCGTAATAAAAT  394

seq1  CATTAAGCCGGTAAGTTTTGAGGTGCAATGTGACAGGAATATAGACAACC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGCCGGTAAGTTTTGAGGTGCAATGTGACAGGAATATAGACAACC  444

seq1  AGAATGACTATGACAGTAAATCTTCAGAAACTTCCCTGGATTCTCCCACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACTATGACAGTAAATCTTCAGAAACTTCCCTGGATTCTCCCACA  494

seq1  GAGGAAAAAGACAGCAGTCTTAACATCCCAAAGATGGCAGGAAGTCCATT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAGACAGCAGTCTTAACATCCCAAAGATGGCAGGAAGTCCATT  544

seq1  CCTAGGACCAGATTGTGCAATGTCTATCTGGTCAACCCCAGAGAGGCAGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGACCAGATTGTGCAATGTCTATCTGGTCAACCCCAGAGAGGCAGA  594

seq1  GGAGAAAGGAGTCTACAGGACATATGTGGATATTTTGATGCCATGGGCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGAGTCTACAGGACATATGTGGATATTTTGATGCCATGGGCCT  644

seq1  GCATTTGTTAACTTATTGGATAGCATTGTGTTGAATGTGTATAGTTGATA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTTAACTTATTGGATAGCATTGTGTTGAATGTGTATAGTTGATA  694

seq1  AGTACTGTACTAGGATTTGGATGACAGGTGATTGTGTCACATGCCTGTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTACTAGGATTTGGATGACAGGTGATTGTGTCACATGCCTGTGC  744

seq1  TCAGTGTTGTCACATCTGTTCTCACCAATGCTTCCCGCTCTGCCACTTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTGTCACATCTGTTCTCACCAATGCTTCCCGCTCTGCCACTTCA  794

seq1  CCATGCTGAAATCAGCCATCATGCCCACAATGTTTTTCTGAAACCCACCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGAAATCAGCCATCATGCCCACAATGTTTTTCTGAAACCCACCA  844

seq1  TAAGCTGAGAGACATCCTCCTGCTTAAAAGGGAAAAAGTCTGAAAGCAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAGAGACATCCTCCTGCTTAAAAGGGAAAAAGTCTGAAAGCAGA  894

seq1  AAAGGACACAGCTGAGCAGCACTTAGAGCTAGTATTTTGTGGCATCTTCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACACAGCTGAGCAGCACTTAGAGCTAGTATTTTGTGGCATCTTCT  944

seq1  AATGAACGGTTTCATTCGCTTTGATTCAAATCTACTAAATGTTTCCCAGG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACGGTTTCATTCGCTTTGATTCAAATCTACTAAATGTTTCCCAGG  994

seq1  GTGTTTGGAATTCATGAGACAGCGACAGAAGCTCACTGTTAACTTCTTAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGAATTCATGAGACAGCGACAGAAGCTCACTGTTAACTTCTTAG  1044

seq1  CCTAAGACAACAGAGTGAATTC  1065
      ||||||||||||||||||||||
seq2  CCTAAGACAACAGAGTGAATTC  1066