BAC Information

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BAC

Clone NameB6Ng01-135B24
Chromosome8 (Build37)
Map Location 113,982,769 - 114,101,710
singlet/doubletdoublet
Overlap geneWdr59, Znrf1
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
Downstream geneLdhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135B24.bB6Ng01-135B24.g
ACCDH935244DH935245
length9071,146
definitionDH935244|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B24, 5' end.DH935245|Mus musculus domesticus DNA, BAC clone: B6Ng01-135B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,982,769 - 113,983,675)(114,100,547 - 114,101,710)
sequence
gaattctgtagctgccacagggaaggtggcagcccttctggggaagatgg
ctaccttttgtttttatcatgctggtctcgttcccgctcccgggggtcac
tgtaggtcagactcccaaagcggagctcctctggcgaagactccccccaa
ggtgaagatatgtgttctgtctctcttcctgctaaagaaaagcaaaagag
aagaaagatggaggccggggaggcacagaaataggaagcccctcccacct
cccacgccccactgtgtgtccactggattctccggaagccaaataagcca
aactcaagactctgagagatggatggagccctacagtcctctttcctagt
ctacctcattgtctagggatttatcaccaagagagcctggtacacatgat
agtcaagcaaattatgatgtagtgatataggagaattctatgcaataatt
cattataaagacctgctaaatatcatgagaaaatgctcatgataaaaata
aaagcagaaccgggtggtggtggcacacacctttaatcccagcacttggg
aggcagagacaggtggatttctgagttcgaggccaggccagcctggtcta
taaagtgagttccagaacagccagggctatacagagaaaccctgtctcga
aaaaaacaaaaaaataaaataaaataaaataaaataaaagcagaatgcaa
aacagcataaaccaaatgactacccgtacacacacacacacacacacaca
cacacacacatacacacacacacacacacacacacacacacacacacaca
cacacacacacacacacgggagggtgtggtggggaagagaagacaatgtt
ctggaattattaagtgagagacactgagatagcaatcattactttttttc
tctgata
gaattcttttacaaggtcaactgcctcaaagccttgcttctaaaggaggt
tctcaatgtatctttatggcacttccaacttcaaaagagacacaaaaagg
aggtccaaagagacatggggaaagagagagagacggaagaactaactctt
gcctatacataactaaaatgaggacgagcccctgaatctactccaatatg
tataactataacccgtgttcagcgaagaaactcactataaattctgagtg
tcctatggatgccttcaggcaccagacaagaaccagcagagcaagaccac
actggttttctttgaagctaatggtccgagggaagactcttagttcttca
aagatggaaggctgtttttaaagtcagaaaaccaatagttagtccataag
cctgcgtgcatatgttttcagtctatccaatcgaagttgttttgtgagtt
agctcatttggagagctgaaacttgggtcctgagatcaagagacagcaaa
attacagaactgagtctctgtagtctcactggagggcctggagggaatgt
cttcatccaggtgggcagctggcatgaccataatgcctctgttttgtgag
ccatatagagggatggtatctgattctgaggaataaactgaaagtagtaa
attatgaacataaaagtacactgaatcaaagtaaaaaggccacgtggttg
agcttatggagcgagcattctaagctacagacaaagcaggagtctggagt
ctagggatggaatgacaagaagattcccggtcctgggccacctgagtgca
ggagacccccaggagggcggtgggacaaacgctgggtgtgaacaatggtt
gccatgctgtgcagttagagaaccactcagagaacaggccatgctggccg
caacctcttagggcagtgtcagactttggggtcctttccctgtgagtaat
cactcagaccccaggaaggagcctctggtatctcctgtctactggggtga
acattcctttagtcagacagggagcctcagaacagagtcctccttcagct
tgttgcttctgacttttgagttgaagtggagtgggtgctggggaaccact
gaccttagatgtttctcggtctacgaaaagagaagcctctctacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113982769_113983675
seq2: B6Ng01-135B24.b_44_950

seq1  GAATTCTGTAGCTGCCACAGGGAAGGTGGCAGCCCTTCTGGGGAAGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCTGCCACAGGGAAGGTGGCAGCCCTTCTGGGGAAGATGG  50

seq1  CTACCTTTTGTTTTTATCATGCTGGTCTCGTTCCCGCTCCCGGGGGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTTGTTTTTATCATGCTGGTCTCGTTCCCGCTCCCGGGGGTCAC  100

seq1  TGTAGGTCAGACTCCCAAAGCGGAGCTCCTCTGGCGAAGACTCCCCCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTCAGACTCCCAAAGCGGAGCTCCTCTGGCGAAGACTCCCCCCAA  150

seq1  GGTGAAGATATGTGTTCTGTCTCTCTTCCTGCTAAAGAAAAGCAAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGATATGTGTTCTGTCTCTCTTCCTGCTAAAGAAAAGCAAAAGAG  200

seq1  AAGAAAGATGGAGGCCGGGGAGGCACAGAAATAGGAAGCCCCTCCCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGATGGAGGCCGGGGAGGCACAGAAATAGGAAGCCCCTCCCACCT  250

seq1  CCCACGCCCCACTGTGTGTCCACTGGATTCTCCGGAAGCCAAATAAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGCCCCACTGTGTGTCCACTGGATTCTCCGGAAGCCAAATAAGCCA  300

seq1  AACTCAAGACTCTGAGAGATGGATGGAGCCCTACAGTCCTCTTTCCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGACTCTGAGAGATGGATGGAGCCCTACAGTCCTCTTTCCTAGT  350

seq1  CTACCTCATTGTCTAGGGATTTATCACCAAGAGAGCCTGGTACACATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCATTGTCTAGGGATTTATCACCAAGAGAGCCTGGTACACATGAT  400

seq1  AGTCAAGCAAATTATGATGTAGTGATATAGGAGAATTCTATGCAATAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCAAATTATGATGTAGTGATATAGGAGAATTCTATGCAATAATT  450

seq1  CATTATAAAGACCTGCTAAATATCATGAGAAAATGCTCATGATAAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAAGACCTGCTAAATATCATGAGAAAATGCTCATGATAAAAATA  500

seq1  AAAGCAGAACCGGGTGGTGGTGGCACACACCTTTAATCCCAGCACTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAACCGGGTGGTGGTGGCACACACCTTTAATCCCAGCACTTGGG  550

seq1  AGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGGCCAGCCTGGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGGCCAGCCTGGTCTA  600

seq1  TAAAGTGAGTTCCAGAACAGCCAGGGCTATACAGAGAAACCCTGTCTCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAGTTCCAGAACAGCCAGGGCTATACAGAGAAACCCTGTCTCGA  650

seq1  AAAAAACAAAAAAATAAAATAAAATAAAATAAAATAAAAGCAGAATGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAAATAAAATAAAATAAAATAAAATAAAAGCAGAATGCAA  700

seq1  AACAGCATAAACCAAATGACTACCCGTACACACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATAAACCAAATGACTACCCGTACACACACACACACACACACACA  750

seq1  CACACACACATACACACACACACACACACACACACACACACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACACACACACACACACACACACACACACACACACACA  800

seq1  CACACACACACACACACGGGAGGGTGTGGTGGGGAAGAGAAGACAATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACGGGAGGGTGTGGTGGGGAAGAGAAGACAATGTT  850

seq1  CTGGAATTATTAAGTGAGAGACACTGAGATAGCAATCATTACTTTTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATTATTAAGTGAGAGACACTGAGATAGCAATCATTACTTTTTTTC  900

seq1  TCTGATA  907
      |||||||
seq2  TCTGATA  907

seq1: chr8_114100547_114101710
seq2: B6Ng01-135B24.g_67_1212 (reverse)

seq1  CTGTGAGAGAGGCTTCTCTTTGTTCTGTAGGAACCCAGAAAACATTCTTA  50
      |||| |||||||||||||||  ||| ||||  ||| || ||||||   ||
seq2  CTGT-AGAGAGGCTTCTCTT--TTC-GTAG--ACCGAG-AAACAT--CTA  41

seq1  AGTACAGTGCTCCCCCAGCCACCCACTCACACTTCAAACTCAAAAGCTCA  100
      ||  ||||| | |||||| ||||||||| |||||| |||||||||| |||
seq2  AGGTCAGTGGTTCCCCAG-CACCCACTC-CACTTC-AACTCAAAAG-TCA  87

seq1  GAAAGCAACAAGCTGAAGGAGGAACTCTG-TCTGGAGCTCCCTGTCTGAC  149
      | |||||||||||||||||||| |||||| ||||  ||||||||||||||
seq2  G-AAGCAACAAGCTGAAGGAGG-ACTCTGTTCTGAGGCTCCCTGTCTGAC  135

seq1  TAAAGG-ATGTTCA-CCCAGTAGACAGGAGATTACCAGAGGCTCCTTTCT  197
      |||||| ||||||| |||||||||||||||| ||||||||||||| ||| 
seq2  TAAAGGAATGTTCACCCCAGTAGACAGGAGA-TACCAGAGGCTCC-TTCC  183

seq1  TGGGGTCTGAGTGATTAACTCACAGGGAAAGGACCCCAAAGTCTGACACC  247
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  TGGGGTCTGAGTGATT-ACTCACAGGGAAAGGACCCCAAAGTCTGACAC-  231

seq1  TTGCCCTAAGAGGTTTGCGGCCAGCATGGCCTGTTCTTCTGAGTGGTTCT  297
       |||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  -TGCCCTAAGAGG-TTGCGGCCAGCATGGCCTGTTC-TCTGAGTGGTTCT  278

seq1  CTAACTGCACAGCATGGCAACCATTGTTCACACCCAGCGTTTGTCCCACC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGCACAGCATGGCAACCATTGTTCACACCCAGCGTTTGTCCCACC  328

seq1  GCCCTCCTGGGGGTCTCCTGCACTCAGGTGGCCCAGGACC-GGAATCTTC  396
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCCTCCTGGGGGTCTCCTGCACTCAGGTGGCCCAGGACCGGGAATCTTC  378

seq1  TTGTCATTCCATCCCTAGACTCCAGACTCCTGCTTTGTCTGTAGCTTAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTCCATCCCTAGACTCCAGACTCCTGCTTTGTCTGTAGCTTAGA  428

seq1  ATGCTCGCTCCATAAGCTCAACCACGTGGCCTTTTTACTTTGATTCAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCGCTCCATAAGCTCAACCACGTGGCCTTTTTACTTTGATTCAGTG  478

seq1  TACTTTTATGTTCATAATTTACTACTTTCAGTTTATTCCTCAGAATCAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATGTTCATAATTTACTACTTTCAGTTTATTCCTCAGAATCAGA  528

seq1  TACCATCCCTCTATATGGCTCACAAAACAGAGGCATTATGGTCATGCCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCCTCTATATGGCTCACAAAACAGAGGCATTATGGTCATGCCAG  578

seq1  CTGCCCACCTGGATGAAGACATTCCCTCCAGGCCCTCCAGTGAGACTACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACCTGGATGAAGACATTCCCTCCAGGCCCTCCAGTGAGACTACA  628

seq1  GAGACTCAGTTCTGTAATTTTGCTGTCTCTTGATCTCAGGACCCAAGTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCAGTTCTGTAATTTTGCTGTCTCTTGATCTCAGGACCCAAGTTT  678

seq1  CAGCTCTCCAAATGAGCTAACTCACAAAACAACTTCGATTGGATAGACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCAAATGAGCTAACTCACAAAACAACTTCGATTGGATAGACTG  728

seq1  AAAACATATGCACGCAGGCTTATGGACTAACTATTGGTTTTCTGACTTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATGCACGCAGGCTTATGGACTAACTATTGGTTTTCTGACTTTA  778

seq1  AAAACAGCCTTCCATCTTTGAAGAACTAAGAGTCTTCCCTCGGACCATTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCTTCCATCTTTGAAGAACTAAGAGTCTTCCCTCGGACCATTA  828

seq1  GCTTCAAAGAAAACCAGTGTGGTCTTGCTCTGCTGGTTCTTGTCTGGTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAGAAAACCAGTGTGGTCTTGCTCTGCTGGTTCTTGTCTGGTGC  878

seq1  CTGAAGGCATCCATAGGACACTCAGAATTTATAGTGAGTTTCTTCGCTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCATCCATAGGACACTCAGAATTTATAGTGAGTTTCTTCGCTGA  928

seq1  ACACGGGTTATAGTTATACATATTGGAGTAGATTCAGGGGCTCGTCCTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGTTATAGTTATACATATTGGAGTAGATTCAGGGGCTCGTCCTCA  978

seq1  TTTTAGTTATGTATAGGCAAGAGTTAGTTCTTCCGTCTCTCTCTCTTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTATGTATAGGCAAGAGTTAGTTCTTCCGTCTCTCTCTCTTTCC  1028

seq1  CCATGTCTCTTTGGACCTCCTTTTTGTGTCTCTTTTGAAGTTGGAAGTGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCTTTGGACCTCCTTTTTGTGTCTCTTTTGAAGTTGGAAGTGC  1078

seq1  CATAAAGATACATTGAGAACCTCCTTTAGAAGCAAGGCTTTGAGGCAGTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGATACATTGAGAACCTCCTTTAGAAGCAAGGCTTTGAGGCAGTT  1128

seq1  GACCTTGTAAAAGAATTC  1164
      ||||||||||||||||||
seq2  GACCTTGTAAAAGAATTC  1146