BAC Information

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BAC

Clone NameB6Ng01-135C24
Chromosome8 (Build37)
Map Location 97,767,450 - 97,903,419
singlet/doubletdoublet
Overlap geneBC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15
Upstream geneNup93, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3
Downstream geneGtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135C24.bB6Ng01-135C24.g
ACCDH935292DH935293
length216736
definitionDH935292|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C24, 5' end.DH935293|Mus musculus domesticus DNA, BAC clone: B6Ng01-135C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,903,199 - 97,903,419)(97,767,450 - 97,768,180)
sequence
gaattccaagaataaaactcagatctggggcagctttccaagtgcctata
cctgatgagctacctcatagagccccccacatttttttgtcaggagaaaa
acaagaatacaatgccaacttggttatactttcttttcacatttctttaa
aaaattcaattaaattttgtgtgtgtgctgggtgggggaggggggccccc
gtaggctctatgtggg
gaattctccatgatccaggcaggcctctgctctggaaagtacatgaagca
ggagagtggggactagaatatacaaatgagaaaagcccattcacaaggat
gtgtcattgggagtaatactttgaagaggatctgggatttcaatctatct
ggctggctgcctccctctcctctctctttctctctctctctctctctctc
tctctctctctctctctctctttccttctccctctccctccctccccctc
tcagtatattgtgtacatatttatctatacatttgtatatacatgtatgt
gtacatgtatgtatgtatgcatatgtgtgcatgtatgtgtcaggcaaccc
tggaatgaaacctttgaaaccaagagcccaaacaaactttccctcctttt
gcactgatctgctcaggggaagggtatcaccttgttcgacaccagcttca
gcacacactaggacccagtctatggccaccctgtgcaagtctgtggtgat
cacaagggtctgctattagaatctgagccagactgctgctcagaccacgc
ccacctgcagcggcctcctttcttttggaaaggaaacagcaaacccttta
cccagggcctgcttgtgattcttttaggctcctaactgactccccgatgc
ctggattccaggagaattcctcatgtcccctcctcatttccccaaaaggc
tcaggtaaagagctctctgccatgcttgctgtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97903199_97903419
seq2: B6Ng01-135C24.b_44_259 (reverse)

seq1  CCCACATATGAGCCTACGGGGGCCATTCCTCTCCAAACCAGCACACACAC  50
      |||||||| |||||||||||||||   |||| || | |||||||||||||
seq2  CCCACATA-GAGCCTACGGGGGCC-CCCCTCCCCCACCCAGCACACACAC  48

seq1  AAAATTTAATTGAA-TGACTATGTTGATGTGAAAAGAAAGTATAACCAAG  99
      |||||||||||||| |   ||     ||||||||||||||||||||||||
seq2  AAAATTTAATTGAATTTTTTAAAGAAATGTGAAAAGAAAGTATAACCAAG  98

seq1  TTGGAATTGTATTCTTGTTTTTCTACTGACTAAAAAATGTGTTTTAGGGG  149
      |||| ||||||||||||||||||| ||||| ||||||||||     ||||
seq2  TTGGCATTGTATTCTTGTTTTTCTCCTGACAAAAAAATGTG----GGGGG  144

seq1  CT-GGTGAGGTGGCTCATCAGGTAAAGGCACTTGCCAACAAGCCCGAAGA  198
      ||   |||||| |||||||||||| |||||||||  ||   ||||  |||
seq2  CTCTATGAGGTAGCTCATCAGGTATAGGCACTTGGAAAGCTGCCC-CAGA  193

seq1  TCTGAGTTTTATTCTTGGAATTC  221
      |||||||||||||||||||||||
seq2  TCTGAGTTTTATTCTTGGAATTC  216

seq1: chr8_97767450_97768180
seq2: B6Ng01-135C24.g_66_801

seq1  GAATTCTCCATGATCCAGGCAGGCCTCTGCTCTGGAAAGTACATGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATGATCCAGGCAGGCCTCTGCTCTGGAAAGTACATGAAGCA  50

seq1  GGAGAGTGGGGACTAGAATATACAAATGAGAAAAGCCCATTCACAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGGGGACTAGAATATACAAATGAGAAAAGCCCATTCACAAGGAT  100

seq1  GTGTCATTGGGAGTAATACTTTGAAGAGGATCTGGGATTTCAATCTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTGGGAGTAATACTTTGAAGAGGATCTGGGATTTCAATCTATCT  150

seq1  GGCTGGCTGCCTCCCTCTCCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGCCTCCCTCTCCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTTTCCTTCTCCCTCTCCCTCCCTCCCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTTTCCTTCTCCCTCTCCCTCCCTCCCCCTC  250

seq1  TCAGTATATTGTGTACATATTTATCTATACATTTGTATATACATGTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATATTGTGTACATATTTATCTATACATTTGTATATACATGTATGT  300

seq1  GTACATGTATGTATGTATGCATATGTGTGCATGTATGTGTCAGGCAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTACATGTATGTATGTATGCATATGTGTGCATGTATGTGTCAGGCAACCC  350

seq1  TGGAATGAAACCTTTGAAACCAAGAGCCCAAACAAACTTTCCCTCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAAACCTTTGAAACCAAGAGCCCAAACAAACTTTCCCTCCTTTT  400

seq1  GCACTGATCTGCTCAGGGGAAGGGTATCACCTTGTTCGACACCAGCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCACTGATCTGCTCAGGGGAAGGGTATCACCTTGTTCGACACCAGCTTCA  450

seq1  GCACACACTAGGACCCAGTCTATGGCCACCCTGTGCAAGTCTGTGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACTAGGACCCAGTCTATGGCCACCCTGTGCAAGTCTGTGGTGAT  500

seq1  CACAAGGGTCTGCTATTAGAATCTGAGCCAGACTGCTGCTCAGACCACGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGTCTGCTATTAGAATCTGAGCCAGACTGCTGCTCAGACCACGC  550

seq1  CCACCTGCAGCGGCCTCCTTTCTTTTGGAAAGGAAACAGCAAACCCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCAGCGGCCTCCTTTCTTTTGGAAAGGAAACAGCAAACCCTTTA  600

seq1  CCCAGGGCCTGCTTGTGAATC-TTTAGGCTCCTAACTGACTCCCCGATGC  649
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  CCCAGGGCCTGCTTGTGATTCTTTTAGGCTCCTAACTGACTCCCCGATGC  650

seq1  CTGGATTCCAGGAGAA-TCCTCATGT-CCCTCCTCATTTCCCCAAAAGGC  697
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  CTGGATTCCAGGAGAATTCCTCATGTCCCCTCCTCATTTCCCCAAAAGGC  700

seq1  TCAGGTAAAGAGCTC-CTGCCATGC-TGCTGTCTGT  731
      ||||||||||||||| ||||||||| ||||||||||
seq2  TCAGGTAAAGAGCTCTCTGCCATGCTTGCTGTCTGT  736