BAC Information

Click to search

BAC

Clone NameB6Ng01-135H03
Chromosome8 (Build37)
Map Location 46,729,647 - 46,865,574
singlet/doubletdoublet
Overlap geneSorbs2
Upstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
Downstream genePdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135H03.bB6Ng01-135H03.g
ACCDH935478DH935479
length1,1331,178
definitionDH935478|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H03, 5' end.DH935479|Mus musculus domesticus DNA, BAC clone: B6Ng01-135H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,864,430 - 46,865,574)(46,729,647 - 46,730,860)
sequence
gaattcttttagttatacaataattgaatgcatcccgtagcaatccagaa
ctatttctaaaggatccagaactactgccacaatcagcgacacatatgca
gactgtcagataacggaagcacaggcgtaggatctctgtccgcattccct
ctcctccctcacaccagagaaactcctcttcatgggaatccaccagggaa
cagctacctctcagtgtaattcccgcaatggcgggagagcagcttccgat
ggatggaatgtctctctcgctctgttttatttctgtcagttcacaaacct
agcaacctttcactcacacagaccatccacctccagcgtgagaagtgctt
aagatacactaacaccagggctcacatgtgattgctctcgaaagctccct
agaccgcatggtttttaatgtttccccaacgtaaaagccttttgctgggc
acacgctttctgggttaccctaaacacactggaggacctgagtttgttct
cataaatgctcattggctttcaagcttcaaggcatgggttgataggcttc
tgtttgttttccccagaaagtactattgcatgatgggataattcttcatg
ggtcaaaccatcagctataccttcccagatttttatagctttaactgtga
gtagtgatttctcttgatgagcccatagtctctggtggtttaaattgcct
tttcaactcatccggttgtgttccttttggctattattagatgtaagcac
agttactgtatcaaaggtaacaatgccttagtggattctttttttaaatt
ttattaagcataaaggcaattaacatggctgatttacaagtgtatccaat
ttagatgatcagttatgcctttattaatattatcccagtgaagttgctat
gattgtcatatggagtctgtaactggaaatgtggtctaatcggtggatca
aatcatttaacacaaatttctggtgatcacaaggctctcctggatcagac
attagcccatttagtcagcactgaaatttatatcaaataatatttgattt
gattataaatatttgataaattcaaagaaattgatttctttttgtcttcc
ttggtaagtgtataaataggtagatgtgcttca
gaattctttagcccttatccatttgaggcaagtcattagaaatgacacag
agccttgtattttacttggaaagccacaatgagtaacatgtaagtaaaag
aattcagactgtttctgttggtctttgtgagtacggacagttcttagttc
ccgccttaatagacttctggtatacctccttcattgttcctaggttttgc
atgtttatctcagtgctggtttctctcaggacaagttaacagaaccacta
gagcagtgggtggagataactgtaatcaggagtaaagctctgtatgtcct
tgaaagctgtaaaattagacatgcttccttggcctggaaattagcaaacg
ccatttctaacccttcccagtacgacgagttcactgttgtgcagcaaaaa
cacaagcagcaaatgaagctggtgccatggaaatagtcactctgacttct
tcacagcagcttaagtttgacctagttcttatgtgggaagaaacttcaga
gtcaaatgaaatttctaaatacactgggaaacagtgagacatggcccaga
agcaaaattgatgaagcaagccctcatcttaatcatgtttatgaactcta
aatacttaaataggaatgggatcaagtattacatcactaatcagggtgat
ccactattgtttctcctttgaatgactctattgtaacaaatgaatatatt
ctgaagacacaatgttacttaacccctttaaaagaagagctagaagagaa
tgctaaatgaaataacgagtttatttattaagctacatttgcacattttc
ttatgaaatgaatttaattatcttatttattacatataatcactaaataa
tatatgtcatgccccgtgtagttacatgatgtgcaagtaccattatgaat
actattttattattcagtgataaactgagtgaggatacataatgaaacac
tatgcctttatttttaataactccatcacagaaacgaaaactttgagtac
tctgcagtcattcatctggctacagtgagtgagataaatgagaacggggt
cctctacaggctgcctgagtgaggaatcaatcatttcctctgaatatatt
atatatatatatagtataatatacatactataagtaatctacaagcatct
cgggtctagatattcctcaaacagacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46864430_46865574
seq2: B6Ng01-135H03.b_50_1182 (reverse)

seq1  TGAAGCCACATCTACCTATTTATACACTTTACCAGGGAGACAAAAAAGGA  50
      ||||| |||||||||||||||||||||||  | ||| |||||||||  ||
seq2  TGAAG-CACATCTACCTATTTATACACTTACCAAGGAAGACAAAAA--GA  47

seq1  AATTCATTTCTTTGAATTTTTAATTCAAATATTTATAATCAAATCAAATA  100
      |||  ||||||||||||||     ||||||||||||||||||||||||||
seq2  AATCAATTTCTTTGAATTT----ATCAAATATTTATAATCAAATCAAATA  93

seq1  TTTATTTGATTATAAATTTCAGTGCTGACTAAATGGGCCTAATGTCTGAT  150
       |||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  -TTATTTGA-TATAAATTTCAGTGCTGACTAAATGGG-CTAATGTCTGAT  140

seq1  CCAGGAGAGGCCTTGTGATCACCAGAAATTTGTGTTAAATGATTTGATCC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGA-GCCTTGTGATCACCAGAAATTTGTGTTAAATGATTTGATCC  189

seq1  ACCGATTAGACCACATTTCCAGTTTACAGACTCCATATGACAATCATAGC  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCGATTAGACCACATTTCCAG-TTACAGACTCCATATGACAATCATAGC  238

seq1  AACTTCACTGGGATAATATTAATAAAGGCATAACTGATCATCTAAATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACTGGGATAATATTAATAAAGGCATAACTGATCATCTAAATTGG  288

seq1  ATACACTTGTAAATCAGCCATGTTAATTGCCTTTATGCTTAATAAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTGTAAATCAGCCATGTTAATTGCCTTTATGCTTAATAAAATTT  338

seq1  AAAAAAAGAATCCACTAAGGCATTGTTACCTTTGATACAGTAACTGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAATCCACTAAGGCATTGTTACCTTTGATACAGTAACTGTGCT  388

seq1  TACATCTAATAATAGCCAAAAGGAACACAACCGGATGAGTTGAAAAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTAATAATAGCCAAAAGGAACACAACCGGATGAGTTGAAAAGGCA  438

seq1  ATTTAAACCACCAGAGACTATGGGCTCATCAAGAGAAATCACTACTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCACCAGAGACTATGGGCTCATCAAGAGAAATCACTACTCACA  488

seq1  GTTAAAGCTATAAAAATCTGGGAAGGTATAGCTGATGGTTTGACCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCTATAAAAATCTGGGAAGGTATAGCTGATGGTTTGACCCATGA  538

seq1  AGAATTATCCCATCATGCAATAGTACTTTCTGGGGAAAACAAACAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATCCCATCATGCAATAGTACTTTCTGGGGAAAACAAACAGAAGC  588

seq1  CTATCAACCCATGCCTTGAAGCTTGAAAGCCAATGAGCATTTATGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACCCATGCCTTGAAGCTTGAAAGCCAATGAGCATTTATGAGAAC  638

seq1  AAACTCAGGTCCTCCAGTGTGTTTAGGGTAACCCAGAAAGCGTGTGCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGGTCCTCCAGTGTGTTTAGGGTAACCCAGAAAGCGTGTGCCCA  688

seq1  GCAAAAGGCTTTTACGTTGGGGAAACATTAAAAACCATGCGGTCTAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGCTTTTACGTTGGGGAAACATTAAAAACCATGCGGTCTAGGGA  738

seq1  GCTTTCGAGAGCAATCACATGTGAGCCCTGGTGTTAGTGTATCTTAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCGAGAGCAATCACATGTGAGCCCTGGTGTTAGTGTATCTTAAGCA  788

seq1  CTTCTCACGCTGGAGGTGGATGGTCTGTGTGAGTGAAAGGTTGCTAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACGCTGGAGGTGGATGGTCTGTGTGAGTGAAAGGTTGCTAGGTT  838

seq1  TGTGAACTGACAGAAATAAAACAGAGCGAGAGAGACATTCCATCCATCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACTGACAGAAATAAAACAGAGCGAGAGAGACATTCCATCCATCGG  888

seq1  AAGCTGCTCTCCCGCCATTGCGGGAATTACACTGAGAGGTAGCTGTTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTCTCCCGCCATTGCGGGAATTACACTGAGAGGTAGCTGTTCCC  938

seq1  TGGTGGATTCCCATGAAGAGGAGTTTCTCTGGTGTGAGGGAGGAGAGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATTCCCATGAAGAGGAGTTTCTCTGGTGTGAGGGAGGAGAGGGA  988

seq1  ATGCGGACAGAGATCCTACGCCTGTGCTTCCGTTATCTGACAGTCTGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGACAGAGATCCTACGCCTGTGCTTCCGTTATCTGACAGTCTGCAT  1038

seq1  ATGTGTCGCTGATTGTGGCAGTAGTTCTGGATCCTTTAGAAATAGTTCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCGCTGATTGTGGCAGTAGTTCTGGATCCTTTAGAAATAGTTCTG  1088

seq1  GATTGCTACGGGATGCATTCAATTATTGTATAACTAAAAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTACGGGATGCATTCAATTATTGTATAACTAAAAGAATTC  1133

seq1: chr8_46729647_46730860
seq2: B6Ng01-135H03.g_69_1246

seq1  GAATTCTTTAGCCCTTATCCATTTGAGGCAAGTCATTAGAAATGACACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCCCTTATCCATTTGAGGCAAGTCATTAGAAATGACACAG  50

seq1  AGCCTTGTATTTTACTTGGAAAGCCACAATGAGTAACATGTAAGTAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTATTTTACTTGGAAAGCCACAATGAGTAACATGTAAGTAAAAG  100

seq1  AATTCAGACTGTTTCTGTTGGTCTTTGTGAGTACGGACAGTTCTTAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGACTGTTTCTGTTGGTCTTTGTGAGTACGGACAGTTCTTAGTTC  150

seq1  CCGCCTTAATAGACTTCTGGTATACCTCCTTCATTGTTCCTAGGTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTAATAGACTTCTGGTATACCTCCTTCATTGTTCCTAGGTTTTGC  200

seq1  ATGTTTATCTCAGTGCTGGTTTCTCTCAGGACAAGTTAACAGAACCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATCTCAGTGCTGGTTTCTCTCAGGACAAGTTAACAGAACCACTA  250

seq1  GAGCAGTGGGTGGAGATAACTGTAATCAGGAGTAAAGCTCTGTATGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGGGTGGAGATAACTGTAATCAGGAGTAAAGCTCTGTATGTCCT  300

seq1  TGAAAGCTGTAAAATTAGACATGCTTCCTTGGCCTGGAAATTAGCAAACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTGTAAAATTAGACATGCTTCCTTGGCCTGGAAATTAGCAAACG  350

seq1  CCATTTCTAACCCTTCCCAGTACGACGAGTTCACTGTTGTGCAGCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTAACCCTTCCCAGTACGACGAGTTCACTGTTGTGCAGCAAAAA  400

seq1  CACAAGCAGCAAATGAAGCTGGTGCCATGGAAATAGTCACTCTGACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAGCAAATGAAGCTGGTGCCATGGAAATAGTCACTCTGACTTCT  450

seq1  TCACAGCAGCTTAAGTTTGACCTAGTTCTTATGTGGGAAGAAACTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAGCTTAAGTTTGACCTAGTTCTTATGTGGGAAGAAACTTCAGA  500

seq1  GTCAAATGAAATTTCTAAATACACTGGGAAACAGTGAGACATGGCCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATGAAATTTCTAAATACACTGGGAAACAGTGAGACATGGCCCAGA  550

seq1  AGCAAAATTGATGAAGCAAGCCCTCATCTTAATCATGTTTATGAACTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTGATGAAGCAAGCCCTCATCTTAATCATGTTTATGAACTCTA  600

seq1  AATACTTAAATAGGAATGGGATCAAGTATTACATCACTAATCAGGGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTAAATAGGAATGGGATCAAGTATTACATCACTAATCAGGGTGAT  650

seq1  CCACTATTGTTTCTCCTTTGAATGACTCTATTGTAACAAATGAATATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATTGTTTCTCCTTTGAATGACTCTATTGTAACAAATGAATATATT  700

seq1  CTGAAGACACAATGTTACTTAACCCCTTTAAAAGAAGAGCTAGAAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACACAATGTTACTTAACCCCTTTAAAAGAAGAGCTAGAAGAGAA  750

seq1  TGCTAAATGAAATAACGAGTTTATTTATTAAGCTACATTTGCACATTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAATGAAATAACGAGTTTATTTATTAAGCTACATTTGCACATTTTC  800

seq1  TTATGAAATGAATTTAATTATCTTATTTATTACATATAATCACTAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAATGAATTTAATTATCTTATTTATTACATATAATCACTAAATAA  850

seq1  TATATGTCATGCCCCGTGTAGTTACATGATGTGCAAGGTACCATTATGAA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATATGTCATGCCCCGTGTAGTTACATGATGTGCAA-GTACCATTATGAA  899

seq1  TACTATTTTATTATTCAGGTGATAAACTGAGTGAGGATACATAATGAAAA  950
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  TACTATTTTATTATTCA-GTGATAAACTGAGTGAGGATACATAATG-AAA  947

seq1  CACTATGCCTTTATTTTTAATAACTCCATCACAGAAACGGAAAACTCTGA  1000
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  CACTATGCCTTTATTTTTAATAACTCCATCACAGAAAC-GAAAACTTTGA  996

seq1  GTACCTCTGCAGTTCATTCATCTGGCTACAGTGAGTGAGATAAATGAGAA  1050
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTA-CTCTGCAG-TCATTCATCTGGCTACAGTGAGTGAGATAAATGAGAA  1044

seq1  CGGGGGTTCTCTACAGGGCTGCTTGGAAGTGGAAGGAAATCAATTCATTT  1100
      | ||||| ||||||| |||||| ||  ||||  ||| |||||| ||||||
seq2  C-GGGGTCCTCTACA-GGCTGCCTG--AGTG--AGG-AATCAA-TCATTT  1086

seq1  CCTCTGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA  1150
      |||||||||             ||| ||   |||   ||| | |||||| 
seq2  CCTCTGAAT-------------ATATTATATATATATATAGT-ATAATAT  1122

seq1  TAATAATAAATGT-ATCTACTAGTCATCTCGGGGTGGTACAAAAGTAATC  1199
        ||| || | || |||||| || |||||||||      | | | || ||
seq2  ACATACTATAAGTAATCTACAAG-CATCTCGGG-----TCTAGA-TATTC  1165

seq1  CTCAAAAACAGACCT  1214
      |||  ||||||||||
seq2  CTC--AAACAGACCT  1178