BAC Information

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BAC

Clone NameB6Ng01-135I17
Chromosome8 (Build37)
Map Location 92,552,468 - 92,553,371
singlet/doubletsinglet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I17.bB6Ng01-135I17.g
ACCDH935553DH935554
length9971,049
definitionDH935553|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I17, 5' end.DH935554|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggaaatcttttaatttctttccttatttcttccctgaccaag
ttatcagtgagtagagcattgttcagtttctatgggtatgtggattttct
gctgttttgttgttattgaagtctagccttagtccatggtgatctgttag
gatgcataggattctttccatcttgtatctgttgaggcttggtttgtgac
caattatgttctccatcttggagaaggtaccatgaggttccgagaagaag
gcatattcttttatttgggggggtgaaatattctgtatatatctgttaaa
tccatttggttcacaacttctattagcttcactgtctctgtttagtttct
gtttcaatatcctattcatttgtgagagtagggtgttgaagtctcccact
gttattgtacatggttcaatgtgtgttttgggcttcagtaaagtttcatt
tatgaatgtgggtgcccttgcccttggggcatagattttcagaattgaga
ctttctcttggtggatttttcctctgttgaatgtgaagtgtcttttccca
tcttgcttggtaacttttggttgaaagtctattttattggatattagaac
agcgactcccacctgtttcttgggaccatttccttggaagacttttctcc
agccttttaccctagagtagtgtctgtctttgtcattaagatatgtttct
tgtattcagcaaaatgctggatcctacttgcatatccactctgttagttt
atgtcttcttattggggaattgagtccacagatattgagagatattaaag
acagatgattgttagttcctgatatgttagttgctgtgggtggcattgtg
tgtatgttattctctctttttggtttgttgtgagaagattaatttctttg
tgtttttctttggtgtaggtactttacttgtgtggagttttcctctaaat
cctcgggagaggtgtatcagaaaccagaaatggtaaatctgttttta
gaattcatggtggtcaaccacatcttgtaatttctgtgcctaatctctaa
gatcatttgtttctctaggagccctttcaacaaataatctagcagtcaag
gtctggcatctgggtgtgctcattgttatctggattgcctcagcttgtat
ctgttctgagtaggcagagctagaagatcaaatatatgtatacatatgta
tgtatacatatatatgtatatatatatgtatatataatatgtaatcatat
ataatacatcaatgtatatgctactgtaagtctatactaatcattgtata
ggcacttgtgtttaattatttctacctctatctaatttgggagtttaatc
tgttacctctggtactaattcagcaccattagctttcttcccttatttat
ttgtaaacttcattttttcagagactgaaaaaaaatctgtcccccatgat
tcacacttttattctccttgttgcactttaatctgcacgtaggcacagat
ttgtaagtctaagagcacaagagcaatacattcccatatgagtacaatga
ttatacacaacgcttttggtctttagcataaagcttgccgtcaaaatacc
attctctctggctcctcagctcaaccatatgctctctttaggaataaaga
agctatgttgagaaggcacaccgaagctggcattggtgctgccgctgatg
ttttcagtgctcttctctaagcagcatgggaggtttgaatttccctgccc
tcatttaagtcagataagaacatgtttcctgttttgcccatgcaatggaa
tagatgatggctagtgctgtttctagaaaggagacgatcacttgttacta
gagtctctggaccctcttctcatcttaccgattatggaaggatcctctac
tgtgaaattacaggattttcaatggaagatagcacccaggaggacattta
agagactcataatggaccttagatggaattgacattgtgtttaataccta
aaaatttagagttattaagcagaatcttatgtttccgcccatatataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92552468_92553371
seq2: B6Ng01-135I17.g_222_1113 (reverse)

seq1  TTTATATATTGGGCGAAACCATAATGATTCTGCCTTAATAACTCTAAAAT  50
      |||||||| |||||| || ||||| ||||||| ||||||||||||||| |
seq2  TTTATATA-TGGGCGGAAACATAA-GATTCTG-CTTAATAACTCTAAATT  47

seq1  TTTAGGTATTTAAAACAACAAATGTACAATTCCATCTAAGGTCCATTATG  100
      |||||||||| || ||    ||||| ||||||||||||||||||||||||
seq2  TTTAGGTATTAAACAC----AATGT-CAATTCCATCTAAGGTCCATTATG  92

seq1  AGTCTCTTAAATGTCCTCTTGGGTTGCTATCTTCCATTTGAAAAATCCTG  150
      |||||||||||||||||| |||| ||||||||||||||   |||||||||
seq2  AGTCTCTTAAATGTCCTCCTGGG-TGCTATCTTCCATT--GAAAATCCTG  139

seq1  TAATTTCACAGTAGAGGATCCTTCCATAATCGGTAAGATGAGAAGAGGGG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAATTTCACAGTAGAGGATCCTTCCATAATCGGTAAGATGAGAAGA-GGG  188

seq1  TCCAGAGACTCTAGTAACAAGTGATCGTCTCCTTTCTAGAAACAGCACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGACTCTAGTAACAAGTGATCGTCTCCTTTCTAGAAACAGCACTA  238

seq1  GCCATCATCTATTCCATTGCATGGGCAAAACAGGAAACATGTTCTTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCATCTATTCCATTGCATGGGCAAAACAGGAAACATGTTCTTATCT  288

seq1  GACTTAAATGAGGGCAGGGAAATTCAAACCTCCCATGCTGCTTAGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAATGAGGGCAGGGAAATTCAAACCTCCCATGCTGCTTAGAGAAG  338

seq1  AGCACTGAAAACATCAGCGGCAGCACCAATGCCAGCTTCGGTGTGCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAAAACATCAGCGGCAGCACCAATGCCAGCTTCGGTGTGCCTTC  388

seq1  TCAACATAGCTTCTTTATTCCTAAAGAGAGCATATGGTTGAGCTGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATAGCTTCTTTATTCCTAAAGAGAGCATATGGTTGAGCTGAGGAG  438

seq1  CCAGAGAGAATGGTATTTTGACGGCAAGCTTTATGCTAAAGACCAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGAATGGTATTTTGACGGCAAGCTTTATGCTAAAGACCAAAAGC  488

seq1  GTTGTGTATAATCATTGTACTCATATGGGAATGTATTGCTCTTGTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTATAATCATTGTACTCATATGGGAATGTATTGCTCTTGTGCTCT  538

seq1  TAGACTTACAAATCTGTGCCTACGTGCAGATTAAAGTGCAACAAGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTACAAATCTGTGCCTACGTGCAGATTAAAGTGCAACAAGGAGAA  588

seq1  TAAAAGTGTGAATCATGGGGGACAGATTTTTTTTCAGTCTCTGAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTGTGAATCATGGGGGACAGATTTTTTTTCAGTCTCTGAAAAAAT  638

seq1  GAAGTTTACAAATAAATAAGGGAAGAAAGCTAATGGTGCTGAATTAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTACAAATAAATAAGGGAAGAAAGCTAATGGTGCTGAATTAGTAC  688

seq1  CAGAGGTAACAGATTAAACTCCCAAATTAGATAGAGGTAGAAATAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAACAGATTAAACTCCCAAATTAGATAGAGGTAGAAATAATTAA  738

seq1  ACACAAGTGCCTATACAATGATTAGTATAGACTTACAGTAGCATATACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTGCCTATACAATGATTAGTATAGACTTACAGTAGCATATACAT  788

seq1  TGATGTATTATATATGATTACATATTATATATACATATATATATACATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTATATATGATTACATATTATATATACATATATATATACATAT  838

seq1  ATATGTATACATACATATGTATACATATATTTGATCTTCTAGCTCTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATACATACATATGTATACATATATTTGATCTTCTAGCTCTGCCT  888

seq1  ACTC  904
      ||||
seq2  ACTC  892