BAC Information

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BAC

Clone NameB6Ng01-135I23
Chromosome8 (Build37)
Map Location 109,953,391 - 109,954,278
singlet/doubletsinglet
Overlap genenone
Upstream gene6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1
Downstream geneWwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135I23.bB6Ng01-135I23.g
ACCDH935565DH935566
length1,1921,100
definitionDH935565|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I23, 5' end.DH935566|Mus musculus domesticus DNA, BAC clone: B6Ng01-135I23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagccaaaggaattaaaggtgtacactaagggctgagccacacc
acaccagaaacagatattttcagtaaataacacaatcttgggattcacta
tgtgatcaaatatgtgacaacaattgtgggtggtacattcctaggctggt
tgtcctgggctctagaagaaagcagactgagcaagccatgaggagcaagc
cagtaagcagcattctttgatggcctctgcatcagctcctgcctctagat
tcctgccctgtttgagttcctgtcctgacttccttcggtgatagactatg
gtgtggaggtgtaagccaaattaaccctttcctccccaagtagtttagtc
atggtttttcatcacagcagtaggaaccctaagataggggctgtgcaaag
tttctgtggtgctgatggtcaaacccaggttcttgtgcgtgctaagcatg
tgcccactgactgagccccatctctagccccctccgttccatgctagatc
caccactcagtgaaggcacacacatcacaattagcgatggcacctttttt
aaactttttcttcttcttttttttttttttttacatgtttaattatgtga
gtctgtgggtatgtgcacatgagttcggtgcccaccgttcctctggagct
ggagttgtgagcaggcagtttcgagctgtttgaggtgggtgccaccttga
gaaactgcactcgggtcctctggaagaacagcgtgtactctaagttgctg
agccatctctctcagctccttaacattttttttcatacattaatgtaatg
tgtgttcacacatgcacaccccacgatacatttgcaaagatcacggacaa
cttgtgggagtcagtcatcttctttgagcatatgggtcctgaggatcgaa
ctcaggcagtcagctgtggcagcaagcactttatagtctggacatcttgt
gggccaccaatagccgtggtgttattgccgtgtcagtctgggctgtaatc
atctctgtatacaatccctgaggttctgatttagaatgattttcgtgttc
ttacaggcaacacttaagggattgaaggaaaaaatcaaggaaattttgca
tagtctagacgtgctctaccagcgtgagcgtgcaccctcacccataccca
cccttggattggacacggtccacatacgatccctgccatgat
gaattccaagtctccctttgatcaatcactgtctaacactttataggagt
ctgacaccccaaccccaaaaggaagcaaattaggaagccacctgctctgt
cactgaaagatcctgacagaatgtaaaaggtcacagaagccccgaaattg
gcaaaatagatttcattgttagtagaactagcttcactgatttagataaa
tagaggtgcacagtgctctggctgctcctcgaacctgtgtgtctgccaat
gttctgaccaggtgtgtgcccattgctgcacctcattgccaggtgtttgt
gatattggttgctatattggctgctgggaaagagtcggaaaatctcccca
gcaaccatagccggggccaatccggatttgctgcaccttcattagactcc
ttccttgtttccctcccatacccatttcttgaggaatcaatcattttaga
atagacattgtttagatatggaaatcccctattcccccttctccttcccc
tgcccgagggcctataaaaactgggacctctttcccctcgaggtcgactc
ctctacccctgcgtgggatatgagtcatccctagagctctggctttcccc
cgaataaagcctcgtgtggtttgcatcaagcttggtctctcatgagttct
tgggtgtccgctattgtcccgaggcctgagcgaggggctcctctcggagt
ctttcagcagggcttatggaatgaatcaatctttctctggtatacaggct
gcaatccaattaacctaacaattactctctgtatagggagagttcaagcg
tctgtcctaggaggctgggtgtctcagctggtcctccgtataagctgaaa
tcccgaaggtgtaggctccagggccagtgaaagaatggatgtgctagcaa
tgtgagggtaggcaggcagagaacagaagcttcctctttgatgtccttgc
atcggcttccagcagcaggtatggcccagactgaaggtgtgtctcttagc
caaccaggcctggaataaagacgtgtgcattctttcctcaggatcctgac
cacagatgtggctctctcaatttcctcaatggtaggctcctttcagatcc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109953391_109954278
seq2: B6Ng01-135I23.g_280_1170

seq1  ACAGTGCTCTGGCTGCTCCTCGAACCTGTGTGTCTGCCAATGTTCTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTCTGGCTGCTCCTCGAACCTGTGTGTCTGCCAATGTTCTGACC  50

seq1  AGGTGTGTGCCCATTGCTGCACCTCATTGCCAGGTGTTTGTGATATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTGCCCATTGCTGCACCTCATTGCCAGGTGTTTGTGATATTGGT  100

seq1  TGCTATATTGGCTGCTGGGAAAGAGTCGGAAAATCTCCCCAGCAACCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATTGGCTGCTGGGAAAGAGTCGGAAAATCTCCCCAGCAACCATA  150

seq1  GCCGGGGCCAATCCGGATTTGCTGCACCTTCATTAGACTCCTTCCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGCCAATCCGGATTTGCTGCACCTTCATTAGACTCCTTCCTTGTT  200

seq1  TCCCTCCCATACCCATTTCTTGAGGAATCAATCATTTTAGAATAGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCATACCCATTTCTTGAGGAATCAATCATTTTAGAATAGACATT  250

seq1  GTTTAGATATGGAAATCCCCTATTCCCCCTTCTCCTTCCCCTGCCCGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATATGGAAATCCCCTATTCCCCCTTCTCCTTCCCCTGCCCGAGG  300

seq1  GCCTATAAAAACTGGGACCTCTTTCCCCTCGAGGTCGACTCCTCTACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATAAAAACTGGGACCTCTTTCCCCTCGAGGTCGACTCCTCTACCCC  350

seq1  TGCGTGGGATATGAGTCATCCCTAGAGCTCTGGCTTTCCCCCGAATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGGGATATGAGTCATCCCTAGAGCTCTGGCTTTCCCCCGAATAAAG  400

seq1  CCTCGTGTGGTTTGCATCAAGCTTGGTCTCTCATGAGTTCTTGGGTGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTGTGGTTTGCATCAAGCTTGGTCTCTCATGAGTTCTTGGGTGTCC  450

seq1  GCTATTGTCCCGAGGCCTGAGCGAGGGGCTCCTCTCGGAGTCTTTCAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGTCCCGAGGCCTGAGCGAGGGGCTCCTCTCGGAGTCTTTCAGCA  500

seq1  GGGCTTATGGAATGAATCAATCTTTCTCTGGTATACAGGCTGCAATCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTATGGAATGAATCAATCTTTCTCTGGTATACAGGCTGCAATCCAA  550

seq1  TTAACCTAACAATTACTCTCTGTATAGGGAGAGTTCAAGCGTCTGTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTAACAATTACTCTCTGTATAGGGAGAGTTCAAGCGTCTGTCCTA  600

seq1  GGAGGCTGGGTGTCTCAGCTGGTCCTCCGTATAAGCTGAAATCCCGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGGGTGTCTCAGCTGGTCCTCCGTATAAGCTGAAATCCCGAAGG  650

seq1  TGTAGGCTCCAGGGCCAGTGAAGGAATGGATGTGCTAGCAAGGTGAGGTT  700
      |||||||||||||||||||||| |||||||||||||||||| |||||| |
seq2  TGTAGGCTCCAGGGCCAGTGAAAGAATGGATGTGCTAGCAATGTGAGGGT  700

seq1  AGGCAGGCAGAGAACAGAAGCTTCCTCCTTTGATGTCCTTGCATCGGCTT  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCAGGCAGAGAACAGAAGCTTCCT-CTTTGATGTCCTTGCATCGGCTT  749

seq1  CCAGCAGCAGGTATGGCCCAGACTGAAGGTGTGTCTCTTAGCCACACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  CCAGCAGCAGGTATGGCCCAGACTGAAGGTGTGTCTCTTAGCCAACCAGG  799

seq1  CCTGGATTAAAGACGTGTGTCATTC-TTCCTCAGGATCCTGACCACAGAT  849
      |||||| |||||||||||| ||||| ||||||||||||||||||||||||
seq2  CCTGGAATAAAGACGTGTG-CATTCTTTCCTCAGGATCCTGACCACAGAT  848

seq1  GTGCCTCTC-CA--TTTCTCGATTGTA-GCTCCTTTCAGATCC  888
      ||| ||||| ||  || ||| || ||| |||||||||||||||
seq2  GTGGCTCTCTCAATTTCCTCAATGGTAGGCTCCTTTCAGATCC  891