BAC Information

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BAC

Clone NameB6Ng01-135L24
Chromosome8 (Build37)
Map Location 9,034,627 - 9,139,262
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28, Lig4, Abhd13, Tnfsf13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-135L24.bB6Ng01-135L24.g
ACCDH935710DH935711
length1,1281,014
definitionDH935710|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L24, 5' end.DH935711|Mus musculus domesticus DNA, BAC clone: B6Ng01-135L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,034,627 - 9,035,762)(9,138,084 - 9,139,262)
sequence
gaattctcagatgagagtgaatgtatgtgcctcctcaaatattgctcagt
tctttatggcagagcattttctgcatcctcactcttcgctttcacgagtg
cacagaacagcacagccaataacacagcagaaactcttaggcctactact
gtaacttagacccttctcaccttccttccctgtccctcccttaatgctcc
tctcttaagcgtgtgataatcaccctcccactcacaaaattccatgtatg
tgtctctgtgtctggcttgcttcatttgacatcaggatgtcaagtttcat
cctcatattcataaataacagggcgtcattatcttacattgtttaatagt
actcagttatgtgtgcatctcatttcctgtatccatttgccatttgaagg
acattgaggcatgcctagtatcatcaaattaaagactatgcaatatatct
acaactggctcatttattataccagcaatgcacatgcaagttatttccta
atctttggttattataaataattctagtgcatttgtccaaattttgacac
tttttaaaaactaagtataaactaaggatttgaaatggtagggttagctt
aatgaactataaaactgtttctgtttatcttcagaagtggttgttacatc
acgagtgtcctggttacctttctgctgctgtgtgtatcttctttgtaaaa
tgtgtaatgtttgcctgctttcaacaggattatttatgctttgttctttt
catgaggcatgtgttccttactgcagtgtatgcagtttgtatgtgcttgt
agtgccctaagttttatctggtgtatggctggcacgttctctcccagtct
tcctaatgtttcttcactgtgtcagcttgctgtttcgctggccagggttt
taatttgatgccatcctgtttgtctatttttgcttctgtgattccgcttg
tgatgtcccctaggcagagctttttcactatgatttcttctaggtctcat
agttttcgtcttacatttggagctttgatgaatattttcatactggtgtc
tgtctccttctcttacatgtacatatttaggaattccagaaccacttgct
gaagaaattcttttcaattgcttggtct

gaattcagaaactggctcaaatcccttagacctcttcagatttggacaga
gatttttgggccaatgtaatttcttaagatgttcactctgtcacagtgac
agagtgtcttctctcagtggaaatcggggggggggtggcagctggccttc
tcctgtcagagtatgctgggaggtagcctcctgatgccctatgtggactt
tggtgctccggggaggccccctccctaagcccactgcattgctgactaca
tagagcaggaaagagcatgctagcaagctctggcctccagattctttcag
ctcaatgagtataaatcaccgattttgtgtgtgctgtctagccagtatgt
ttcccatgtctacatcatcttctaggtatctatgaagttctgaggacctt
gacacaggtctgtcaaactgagctagaaaacacctgatttcacaaatcat
ctctcaacaacttcttcttcttcttcttcttcttcttcttcttcttcttc
tccttctccttctccttctccttctccttctccttctccttctccttctc
cttctccttctccttctccttctccttctccttctccttctccttctcct
tctccttctccttctccttctccttctccttctccttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttttcatttccaacttaactcac
actctcctggtcagagagtctcattaacctttacccactgacaagtggta
tttccatattgatagtcaattctatatagagtttggccctttcatgtgca
tagatgtgtctgattcatactattcaagagcatatgttatatgcccatga
catcagcttatgcattcgaatttccatggctggttatttcttgaggacta
ggtatctttgtgtgtacgttacctactctgctgcttgcactgactttgac
tgacttgtattttaatgatcagaatgagacatgcagtcaatgctcactct
cactctgattgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_9034627_9035762
seq2: B6Ng01-135L24.b_47_1174

seq1  GAATTCTCAGATGAGAGTGAATGTATGTGCCTCCTCAAATATTGCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATGAGAGTGAATGTATGTGCCTCCTCAAATATTGCTCAGT  50

seq1  TCTTTATGGCAGAGCATTTTCTGCATCCTCACTCTTCGCTTTCACGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGGCAGAGCATTTTCTGCATCCTCACTCTTCGCTTTCACGAGTG  100

seq1  CACAGAACAGCACAGCCAATAACACAGCAGAAACTCTTAGGCCTACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACAGCACAGCCAATAACACAGCAGAAACTCTTAGGCCTACTACT  150

seq1  GTAACTTAGACCCTTCTCACCTTCCTTCCCTGTCCCTCCCTTAATGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTAGACCCTTCTCACCTTCCTTCCCTGTCCCTCCCTTAATGCTCC  200

seq1  TCTCTTAAGCGTGTGATAATCACCCTCCCACTCACAAAATTCCATGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAGCGTGTGATAATCACCCTCCCACTCACAAAATTCCATGTATG  250

seq1  TGTCTCTGTGTCTGGCTTGCTTCATTTGACATCAGGATGTCAAGTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTGTCTGGCTTGCTTCATTTGACATCAGGATGTCAAGTTTCAT  300

seq1  CCTCATATTCATAAATAACAGGGCGTCATTATCTTACATTGTTTAATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATATTCATAAATAACAGGGCGTCATTATCTTACATTGTTTAATAGT  350

seq1  ACTCAGTTATGTGTGCATCTCATTTCCTGTATCCATTTGCCATTTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTTATGTGTGCATCTCATTTCCTGTATCCATTTGCCATTTGAAGG  400

seq1  ACATTGAGGCATGCCTAGTATCATCAAATTAAAGACTATGCAATATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGGCATGCCTAGTATCATCAAATTAAAGACTATGCAATATATCT  450

seq1  ACAACTGGCTCATTTATTATACCAGCAATGCACATGCAAGTTATTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGCTCATTTATTATACCAGCAATGCACATGCAAGTTATTTCCTA  500

seq1  ATCTTTGGTTATTATAAATAATTCTAGTGCATTTGTCCAAATTTTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGTTATTATAAATAATTCTAGTGCATTTGTCCAAATTTTGACAC  550

seq1  TTTTTAAAAACTAAGTATAAACTAAGGATTTGAAATGGTAGGGTTAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAACTAAGTATAAACTAAGGATTTGAAATGGTAGGGTTAGCTT  600

seq1  AATGAACTATAAAACTGTTTCTGTTTATCTTCAGAAGTGGTTGTTACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTATAAAACTGTTTCTGTTTATCTTCAGAAGTGGTTGTTACATC  650

seq1  ACGAGTGTCCTGGTTACCTTTCTGCTGCTGTGTGTATCTTCTTTGTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTGTCCTGGTTACCTTTCTGCTGCTGTGTGTATCTTCTTTGTAAAA  700

seq1  TGTGTAATGTTTGCCTGCTTTCAACAGGATTATTTATGCTTTGTTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATGTTTGCCTGCTTTCAACAGGATTATTTATGCTTTGTTCTTTT  750

seq1  CATGAGGCATGTGTTCCTTACTGCAGTGTATGCAGTTTGTATGTGCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCATGTGTTCCTTACTGCAGTGTATGCAGTTTGTATGTGCTTGT  800

seq1  AGTGCCCTAAGTTTTATCTGGTGTATGGCTGGCACGTTCTCTCCCAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCTAAGTTTTATCTGGTGTATGGCTGGCACGTTCTCTCCCAGTCT  850

seq1  TCCTAATGTTTCTTCACTGTGTCAGCTTGCTGTTTCGCTGGCCAGGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGTTTCTTCACTGTGTCAGCTTGCTGTTTCGCTGGCCAGGGTTT  900

seq1  TAATTTGATGCCATCCTGTTTGTCTATTTTTGCTTCTGTTGATTCCGCTT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAATTTGATGCCATCCTGTTTGTCTATTTTTGCTTCTG-TGATTCCGCTT  949

seq1  GTGATGTCCCCTAGGGCAGAAGGCTTTTTCACTATGATTTCTTCTAGGGT  1000
      ||||||||||||| ||||||  |||||||||||||||||||||||| |||
seq2  GTGATGTCCCCTA-GGCAGA--GCTTTTTCACTATGATTTCTTCTA-GGT  995

seq1  CTCATAGTTTTCGGTCTTACATTTGGAGCTTTGAATGAATATTTTCATAC  1050
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  CTCATAGTTTTC-GTCTTACATTTGGAGCTTTG-ATGAATATTTTCATAC  1043

seq1  T-GTGTCTGTCTTCCTTCTCTTACATGTACATATTTAGGTATTCCAAGAC  1099
      | ||||||||| ||||||||||||||||||||||||||| ||||||  ||
seq2  TGGTGTCTGTC-TCCTTCTCTTACATGTACATATTTAGGAATTCCAGAAC  1092

seq1  CACTTGCTGAAGATATCCTTTCCAAATTGCTTGGTCT  1136
      ||||||||||||| || |||| | |||||||||||||
seq2  CACTTGCTGAAGAAATTCTTTTC-AATTGCTTGGTCT  1128


seq1: chr8_9138084_9139262
seq2: B6Ng01-135L24.g_69_1082 (reverse)

seq1  ATGCAATCAAGCAATGCAGCAATTATAATACTGAGTATAACTTTCTAGCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTCAGTCTAGAGATTTAGACAATCCTCATTGTGAATTTGACCCTCCAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACCCGATCCCTCACCCCTTCTCTGCAGTCTCTGAAGGGCTATTCA  150
                                                || | |||
seq2  ----------------------------------------ATGC-AATCA  9

seq1  GAGTTGAGAGTGAGCATTGTGCTGGGAATTGTCTTTCTTTTTGTATCTTT  200
      ||| |||||||||||||||  |||     ||||  || || || |||   
seq2  GAG-TGAGAGTGAGCATTG-ACTG---CATGTC--TCATTCTG-ATC--A  49

seq1  TTAAATTAAATACTCCAGTTTAAATCAGTGGCAAGCCAACAGGAGTAGGG  250
      ||||| || | | | ||||  || ||||| ||||| || || ||||| ||
seq2  TTAAAATACA-AGT-CAGTCAAAGTCAGT-GCAAG-CAGCA-GAGTA-GG  93

seq1  TAACGTAACACACAAAGGTACTTAAGTCCTCAAGAAATAAACCACCCATG  300
      |||||| |||||||||| ||| | |||||||||||||| ||||| |||||
seq2  TAACGT-ACACACAAAGATACCT-AGTCCTCAAGAAAT-AACCAGCCATG  140

seq1  GAAATTTGGAATTCATTAAGCAGAACTTTATGGGCATATGAATATATGCT  350
      |||| || |||| || ||||| | |  | |||||||||| || |||||||
seq2  GAAA-TTCGAATGCA-TAAGCTG-ATGTCATGGGCATAT-AACATATGCT  186

seq1  CTTTGTATAGAATGAATCAGACACATCTATGCACATTGAAAGGGCCAAAC  400
      | ||| |||| |||||||||||||||||||||||| ||||||||||||||
seq2  C-TTGAATAGTATGAATCAGACACATCTATGCACA-TGAAAGGGCCAAAC  234

seq1  TCTATACAGAATTGACTTTCACTATGGAAA-ACCACTTACCAGTGTGGAA  449
      |||||| |||||||||| ||| |||||||| |||||||  ||||| | ||
seq2  TCTATATAGAATTGACTATCAATATGGAAATACCACTTGTCAGTGGGTAA  284

seq1  AGGTTAATGAGACTCTCTGACCAGGAGGTTGTGAGTTAAGTTTGAAATGA  499
      |||||||||||||||||||||||||||  ||||||||||||| |||||||
seq2  AGGTTAATGAGACTCTCTGACCAGGAGAGTGTGAGTTAAGTTGGAAATGA  334

seq1  AAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGA  384

seq1  AGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAG  434

seq1  GAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGA  484

seq1  GAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGAAGAAGAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGAAGAAGAAGA  534

seq1  AGAAGAAGAAGAAGAAGAAGTTGTTGAGAGATGATTTGTGAAATCAGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGTTGTTGAGAGATGATTTGTGAAATCAGGTG  584

seq1  TTTTCTAGCTCAGTTTGACAGACCTGTGTCAAGGTCCTCAGAACTTCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCTCAGTTTGACAGACCTGTGTCAAGGTCCTCAGAACTTCATA  634

seq1  GATACCTAGAAGATGATGTAGACATGGGAAACATACTGGCTAGACAGCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTAGAAGATGATGTAGACATGGGAAACATACTGGCTAGACAGCAC  684

seq1  ACACAAAATCGGTGATTTATACTCATTGAGCTGAAAGAATCTGGAGGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATCGGTGATTTATACTCATTGAGCTGAAAGAATCTGGAGGCCA  734

seq1  GAGCTTGCTAGCATGCTCTTTCCTGCTCTATGTAGTCAGCAATGCAGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGCTAGCATGCTCTTTCCTGCTCTATGTAGTCAGCAATGCAGTGG  784

seq1  GCTTAGGGAGGGGGCCTCCCCGGAGCACCAAAGTCCACATAGGGCATCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGGAGGGGGCCTCCCCGGAGCACCAAAGTCCACATAGGGCATCAG  834

seq1  GAGGCTACCTCCCAGCATACTCTGACAGGAGAAGGCCAGCTGCCACCCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTACCTCCCAGCATACTCTGACAGGAGAAGGCCAGCTGCCACCCCC  884

seq1  CCCCCGATTTCCACTGAGAGAAGACACTCTGTCACTGTGACAGAGTGAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGATTTCCACTGAGAGAAGACACTCTGTCACTGTGACAGAGTGAAC  934

seq1  ATCTTAAGAAATTACATTGGCCCAAAAATCTCTGTCCAAATCTGAAGAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAGAAATTACATTGGCCCAAAAATCTCTGTCCAAATCTGAAGAGG  984

seq1  TCTAAGGGATTTGAGCCAGTTTCTGAATTC  1179
      ||||||||||||||||||||||||||||||
seq2  TCTAAGGGATTTGAGCCAGTTTCTGAATTC  1014


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