BAC Information

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BAC

Clone NameB6Ng01-136C03
Chromosome8 (Build37)
Map Location 46,026,420 - 46,027,535
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039508
Downstream geneFat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136C03.bB6Ng01-136C03.g
ACCDH935987DH935988
length1,2931,120
definitionDH935987|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C03, 5' end.DH935988|Mus musculus domesticus DNA, BAC clone: B6Ng01-136C03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggctttaaaggacccattggttgaatcgccttattaattgct
cttaaatctgttatcctccatttagctgatttcctttttacaacaaatac
aggggagtctatatcggctgctagactcctctacatgttgagcctccagc
tgtttttgtaccagttgttcaagtgcctctagtttttcttttgttatggg
ttgctgctcttgtcaaagaggctggtttgaaaaccattttaggggtaagg
ctgttggtatgtcagcagtggcctcttttataaatttggaaactcaatcc
ctgtgacaccctgtcttttggtcattggtaaatcttatgattgttctcta
tcacctgtgtcaataacatccccaggagcatcaaccacatcacctctaat
ttccttagttgctgtccctggaattgcagaaatattaatttgagtattcc
attgttgtaaaagatcccttccccatacgtttatgggtaagtcagtcaca
aatgcctcaacttccctgcttgcccttctggtcccacacaggtaatccat
tggatactttgtcttattcgtgataatttaccaattcctataaattgtgt
gaaaaccttctgaagtagccaatctggattccaagacttttgggaatgta
tgctaacatcagctcctattatctaccaagccttctatgtcaacaccatt
catttgtaccattaatttgagtctctgataattgaccactgtttgccaga
aaacacattttccaaaagctcctgttctttctattggagcagtcttgctc
ttggtgtaaagaaataacagttgagcaattctatcccctgcatcaatttg
catctcctttttcacatatgccatgatttttatttcttctgtgctatccc
catatattatacctggatgcacaataaattcttgaaaagttaatcctttt
cttctcaggattattctcactgtctctgaaagcaaaggaccatacacacc
agtgataacttgtacattcaatggttagggtaagaagagtttctatagtc
agaatccaaagctgtgccttcttctgtagcatgctaagaataaaaatacc
taatttggatttttctcacctgttcagaagttctgtctgaacaaaagaaa
acggctcgtattttgaagtggttctagctgaaggcccttggtacattctg
aagcaagtacctttagggtttctaagccaatcgtaacagttgcctttcta
aagatcataagcgagacttttgggtacgatatcagaaccagtg
gaattcttttctattaggggaacagaagcactctcatattttccttgtgc
gtgtcctctcccgtttaatccagccttctagcctcctttcttggttgttt
atccatctgtccattcgtcagtccaggaactgtgagtcttctctgcaaac
cccggggcttgacgaagtggatgtgggcgaacaagtcaggtttcccatcc
ttaaagagctcagatctggtgagagaaggctagtcagcattggatgttgg
aagagatcggtgaagatcacagtagtccatcctagcacttgagcaagctg
gggcacctgcaataggtggatttggctgagtccctcatgactgactgggg
agtgggttggggcgaccaggaatgtccaaagtagcatgtggcttgtgtga
cttgattgtggtcggctcactacagagtaaagaaagagaccttagctgga
agaaaatgaaaacgctgggtgagttaccgcggatgcttcttcaacttagt
tcactggacttccttcttgtagctgctgtcttcttttgaccagggtagaa
cagaggacaataaaaatgacagtgccggaagttggccttatggggcaaag
gttaaggacacggaaacaaggaaatgctgaagagaagccactgaactgta
ttaggagacttaagttgcattgtctttcagataggaggaagtgtagctgt
tgctttagattaacgcgcccccagccacactggttgggagtcctgccctc
aagacagcttggcatgatacaagcctgtgagaagtgcccctttagtttgc
aggacactggggttgcattaggtaagtaagagatcagattattaaaattt
ccttgtcaaaacctcgtaggaatattaccaagtcaggtcttggggagaga
gcccagcggtgagtggctgcttctcttttccgaggacctgagttttgttc
ccagtacccacattgtggctcgcaacagctttataacacaggtgcgggga
tcccagccctcatgcatgcacactcccacccagaaacgccacgcggattc
cttaaagctaaataaaaatatactcactatttacctcgtttgttcttgta
tctcgcatgcaaaggcaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_46026420_46027535
seq2: B6Ng01-136C03.g_68_1187

seq1  GAATTCTTTTCTATTAGGGGAACAGAAGCACTCTCATATTTTCCTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTATTAGGGGAACAGAAGCACTCTCATATTTTCCTTGTGC  50

seq1  GTGTCCTCTCCCGTTTAATCCAGCCTTCTAGCCTCCTTTCTTGGTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCTCCCGTTTAATCCAGCCTTCTAGCCTCCTTTCTTGGTTGTTT  100

seq1  ATCCATCTGTCCATTCGTCAGTCCAGGAACTGTGAGTCTTCTCTGCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCTGTCCATTCGTCAGTCCAGGAACTGTGAGTCTTCTCTGCAAAC  150

seq1  CCCGGGGCTTGACGAAGTGGATGTGGGCGAACAAGTCAGGTTTCCCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGCTTGACGAAGTGGATGTGGGCGAACAAGTCAGGTTTCCCATCC  200

seq1  TTAAAGAGCTCAGATCTGGTGAGAGAAGGCTAGTCAGCATTGGATGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGCTCAGATCTGGTGAGAGAAGGCTAGTCAGCATTGGATGTTGG  250

seq1  AAGAGATCGGTGAAGATCACAGTAGTCCATCCTAGCACTTGAGCAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCGGTGAAGATCACAGTAGTCCATCCTAGCACTTGAGCAAGCTG  300

seq1  GGGCACCTGCAATAGGTGGATTTGGCTGAGTCCCTCATGACTGACTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTGCAATAGGTGGATTTGGCTGAGTCCCTCATGACTGACTGGGG  350

seq1  AGTGGGTTGGGGCGACCAGGAATGTCCAAAGTAGCATGTGGCTTGTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTGGGGCGACCAGGAATGTCCAAAGTAGCATGTGGCTTGTGTGA  400

seq1  CTTGATTGTGGTCGGCTCACTACAGAGTAAAGAAAGAGACCTTAGCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGTGGTCGGCTCACTACAGAGTAAAGAAAGAGACCTTAGCTGGA  450

seq1  AGAAAATGAAAACGCTGGGTGAGTTACCGCGGATGCTTCTTCAACTTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGAAAACGCTGGGTGAGTTACCGCGGATGCTTCTTCAACTTAGT  500

seq1  TCACTGGACTTCCTTCTTGTAGCTGCTGTCTTCTTTTGACCAGGGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGACTTCCTTCTTGTAGCTGCTGTCTTCTTTTGACCAGGGTAGAA  550

seq1  CAGAGGACAATAAAAATGACAGTGCCGGAAGTTGGCCTTATGGGGCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAATAAAAATGACAGTGCCGGAAGTTGGCCTTATGGGGCAAAG  600

seq1  GTTAAGGACACGGAAACAAGGAAATGCTGAAGAGAAGCCACTGAACTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGACACGGAAACAAGGAAATGCTGAAGAGAAGCCACTGAACTGTA  650

seq1  TTAGGAGACTTAAGTTGCATTGTCTTTCAGATAGGAGGAAGTGTAGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGACTTAAGTTGCATTGTCTTTCAGATAGGAGGAAGTGTAGCTGT  700

seq1  TGCTTTAGATTAACGCGCCCCCAGCCACACTGGTTGGGAGTCCTGCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGATTAACGCGCCCCCAGCCACACTGGTTGGGAGTCCTGCCCTC  750

seq1  AAGACAGCTTGGCATGATACAAGCCTGTGAGAAGTGCCCCTTTAGTTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTTGGCATGATACAAGCCTGTGAGAAGTGCCCCTTTAGTTTGC  800

seq1  AGGACACTGGGGTTGCATTAGGTAAGTAAGAGATCAGATTATTAAAA-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGACACTGGGGTTGCATTAGGTAAGTAAGAGATCAGATTATTAAAATTT  850

seq1  CCTTGTCAAAACCTCGTAGGAATA-TACCAAGTCAGGGTCTGGGGAGAGA  898
      |||||||||||||||||||||||| ||||||||||||   ||||||||||
seq2  CCTTGTCAAAACCTCGTAGGAATATTACCAAGTCAGGTCTTGGGGAGAGA  900

seq1  GCCCAGCGGTGAGTGGCTGCTTCTC-TTTCCGAGGACCTGAGTTCTGTTC  947
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  GCCCAGCGGTGAGTGGCTGCTTCTCTTTTCCGAGGACCTGAGTTTTGTTC  950

seq1  CCAGTACCCACATTGGTGGCTCGCAACAGC-TTATAACACAGGTGCGGGG  996
      |||||||||||||| ||||||||||||||| ||||||||||||||| |||
seq2  CCAGTACCCACATT-GTGGCTCGCAACAGCTTTATAACACAGGTGC-GGG  998

seq1  GATCCCAGGCCTCATGCATGCACACTCCCACCCAGACACG-CACGC-GAA  1044
      |||||||| ||||||||||||||||||||||||||| ||| ||||| || 
seq2  GATCCCAGCCCTCATGCATGCACACTCCCACCCAGAAACGCCACGCGGAT  1048

seq1  TCCTTAAAGCTAAAATAAAAATATACTCAACTATTTACTCAGTATGTAC-  1093
      ||||||||||| |||||||||||||||| |||||||||   || ||| | 
seq2  TCCTTAAAGCT-AAATAAAAATATACTC-ACTATTTACCTCGTTTGTTCT  1096

seq1  TGAATC-AGCAGGCAAAGGCAAAA  1116
      || |||  ||| ||||||||||||
seq2  TGTATCTCGCATGCAAAGGCAAAA  1120