BAC Information

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BAC

Clone NameB6Ng01-136K15
Chromosome12 (Build37)8 (Build37)
Map Location 9,558,334 - 9,559,55959,665,106 - 59,665,661
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238
Downstream geneOsr1, LOC382567, Nt5c1b, Rdh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136K15.bB6Ng01-136K15.g
ACCDH936378DH936379
length1,198934
definitionDH936378|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K15, 5' end.DH936379|Mus musculus domesticus DNA, BAC clone: B6Ng01-136K15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,558,334 - 9,559,559)(59,665,106 - 59,665,661)
sequence
gaattccaacgtatgctgacattctctactctctccacatatggaaaaca
tctctgcatcgcttttagtatcctaagctatgaagcagaggatgataaga
tccccagggtcccaacgaagcctgatattctagaagcgttcatttcatac
tattcctgaagagcacctagtaagggagccgtgccccaacatttcttctg
ttttcccctcagagggtggtcaggaggtacccacagatgatgactccggt
aggctttggctgttgtgccattatgtaagaaaaccaaagccaaacgggaa
attctataactttactttcttccatttctgtctacaaggggcactacatt
accaggagcacgtaggattctccgaggaaagggctgctgccagtgggtct
gctgaattctgtatgggaatggcacagaaaagtatagtagggtggtcagg
gctgaattactagagaaaaggtcaatttataagtgagggtcagttccagg
tcatggccatttgagagcagccccaatttacaagctttaattaaagggcc
agaatcactgttccttgtataccttccctgttgggtttggcaaatctgag
taaatgaatgagctatcagtgcagagattagaacacctgtctacactttg
tccttccaattccaagtgtgtaatctacataccctattccagtcagagaa
atccccatgtaatattcttttgcattcttaaaatttaaatccctggatgt
gattttagagcaacttggctactctgattcccctgcttcatgcacgaccc
aaagtctttatatttcttttcaagaaagacaaggtcttgaagtttagctt
ttcccatcctgcagacttcaagttgatcatcctaaataatctttcttctg
ctaaataaaaagtgaagtcacctgttcagtcatttcaattaaaaaattag
tatatatgaaatgaacttaaaattatctcaatttctttgttgtagtggag
atacaaacaccataagaaaaaatgatgaatgatatgattttttgtcttgg
ttttattttattagatatttcttcatttgcaattcaatgcattcgaaagt
tcctaatctctctccccgccctgttccccaacccattccatccgttcttg
actggcattcctgtatagcaatagtacttcgaaatacaagctctcctc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattctgttagcaagaattttattaaggatttttgc
ttcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatctgagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagacccaactcctcgtttggttaattccctga
atagttcttcttgtttccacttggttgatttcacccagagtttgattatc
tcctgccctctactcctcttgggtgaatttgcttccttttgttctagagc
ttttagtgtgttgtcaagttgctagtgtgtgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9558334_9559559
seq2: B6Ng01-136K15.b_43_1240

seq1  GAATTCCAACGTATGCTGACATTCTCTACTCTCTCCACATATGGAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACGTATGCTGACATTCTCTACTCTCTCCACATATGGAAAACA  50

seq1  TCTCTGCATCGCTTTTAGTATCCTAAGCTATGAAGCAGAGGATGATAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATCGCTTTTAGTATCCTAAGCTATGAAGCAGAGGATGATAAGA  100

seq1  TCCCCAGGGTCCCAACGAAGCCTGATATTCTAGAAGCGTTCATTTCATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGGTCCCAACGAAGCCTGATATTCTAGAAGCGTTCATTTCATAC  150

seq1  TATTCCTGAAGAGCACCTAGTAAGGGAGCCGTGCCCCAACATTTCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGAAGAGCACCTAGTAAGGGAGCCGTGCCCCAACATTTCTTCTG  200

seq1  TTTTCCCCTCAGAGGGTGGTCAGGAGGTACCCACAGATGATGACTCCGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTCAGAGGGTGGTCAGGAGGTACCCACAGATGATGACTCCGGT  250

seq1  AGGCTTTGGCTGTTGTGCCATTATGTAAGAAAACCAAAGCCAAACGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGGCTGTTGTGCCATTATGTAAGAAAACCAAAGCCAAACGGGAA  300

seq1  ATTCTATAACTTTACTTTCTTCCATTTCTGTCTACAAGGGGCACTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAACTTTACTTTCTTCCATTTCTGTCTACAAGGGGCACTACATT  350

seq1  ACCAGGAGCACGTAGGATTCTCCGAGGAAAGGGCTGCTGCCAGTGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGCACGTAGGATTCTCCGAGGAAAGGGCTGCTGCCAGTGGGTCT  400

seq1  GCTGAATTCTGTATGGGAATGGCACAGAAAAGTATAGTAGGGTGGTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTCTGTATGGGAATGGCACAGAAAAGTATAGTAGGGTGGTCAGG  450

seq1  GCTGAATTACTAGAGAAAAGGTCAATTTATAAGTGAGGGTCAGTTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTACTAGAGAAAAGGTCAATTTATAAGTGAGGGTCAGTTCCAGG  500

seq1  TCATGGCCATTTGAGAGCAGCCCCAATTTACAAGCTTTAATTAAAGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCATTTGAGAGCAGCCCCAATTTACAAGCTTTAATTAAAGGGCC  550

seq1  AGAATCACTGTTCCTTGTATACCTTCCCTGTTGGGTTTGGCAAATCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACTGTTCCTTGTATACCTTCCCTGTTGGGTTTGGCAAATCTGAG  600

seq1  TAAATGAATGAGCTATCAGTGCAGAGATTAGAACACCTGTCTACACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATGAGCTATCAGTGCAGAGATTAGAACACCTGTCTACACTTTG  650

seq1  TCCTTCCAATTCCAAGTGTGTAATCTACATACCCTATTCCAGTCAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCAATTCCAAGTGTGTAATCTACATACCCTATTCCAGTCAGAGAA  700

seq1  ATCCCCATGTAATATTCTTTTGCATTCTTAAAATTTAAATCCCTGGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCATGTAATATTCTTTTGCATTCTTAAAATTTAAATCCCTGGATGT  750

seq1  GATTTTAGAGCAACTTGGCTACTCTGATTCCCCTGCTTCATGCACGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAGAGCAACTTGGCTACTCTGATTCCCCTGCTTCATGCACGACCC  800

seq1  AAAGTCTTTATATTTCTTTTCAAGAAAGACAAGGTCTTGAAGTTTAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTTATATTTCTTTTCAAGAAAGACAAGGTCTTGAAGTTTAGCTT  850

seq1  TTCCCATCCTGCAGACTTCAAGTTGATCATCCTAAATAATCTTTCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCCTGCAGACTTCAAGTTGATCATCCTAAATAATCTTTCTTCTG  900

seq1  CTAAATAAAAAGTGAAGTCACCTGTTCAGTCATTTCAATTAAAAAATTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAAAGTGAAGTCACCTGTTCAGTCATTTCAATTAAAAAATTAG  950

seq1  TTATATATGAAATGAACTTAAAAATTATCTCAATTTCTTTGTTGTAAGTG  1000
       |||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  -TATATATGAAATGAACTT-AAAATTATCTCAATTTCTTTGTTGT-AGTG  997

seq1  GAGATTACAAAACACATAAGAAAAAAATGATGAATGATTATGATTTTTTG  1050
      |||| ||||||   |||||| |||||||||||||||| ||||||||||||
seq2  GAGA-TACAAACACCATAAG-AAAAAATGATGAATGA-TATGATTTTTTG  1044

seq1  TCTTTTTGTTTTTATTTTTATTAGATATTTTCTTCATTTGCATTTCAAAT  1100
      ||   ||| ||||| |||||||||||| |||||||||||||| ||| |||
seq2  TC---TTGGTTTTA-TTTTATTAGATA-TTTCTTCATTTGCAATTC-AAT  1088

seq1  GCTATTCTGAAAGTCCCCTATACTCTCTCCCCGCCCTGCTCCCCAACCCA  1150
      || |||| ||||||  ||||  |||||||||||||||| |||||||||||
seq2  GC-ATTC-GAAAGT-TCCTAATCTCTCTCCCCGCCCTGTTCCCCAACCCA  1135

seq1  TCCACTCCCGTTTCCTGGCCCTGGCATTCCCCTGTATTAGGGCATATGAT  1200
      | |  |||   ||| ||   ||||||||  |||||||    |||   |  
seq2  TTCCATCC--GTTCTTG--ACTGGCATT--CCTGTAT---AGCAATAGTA  1176

seq1  CTTCGAAATACCAAGGGCCTCTCCTC  1226
      |||||||||| ||||   ||||||||
seq2  CTTCGAAATA-CAAG---CTCTCCTC  1198

seq1: chr8_59665106_59665661
seq2: B6Ng01-136K15.g_67_622 (reverse)

seq1  GTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAACAGTCCCATATC  50

seq1  CCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAAAGCC  100

seq1  CAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT  150

seq1  CTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTAT  200
      |||| |||||||||||||||||||||||||||||||||||||||| ||| 
seq2  CTAATTCCAGTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAAGTAC  200

seq1  TCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCAC  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTACCCAACTCATTTTATGAAGCCACTATTACTCAGATACCTAAACCAC  250

seq1  AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAAT  300

seq1  ATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACA  350
      ||||| ||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATCGAAGCAAAAATCCTTAATAAAATTCTTGCTAACAGAATCCAAGAACA  350

seq1  CATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGC  400

seq1  AGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAAC  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGATGGTTTAATATATGAAAATCCATCAATGTAATCCATTATATAAAC  450

seq1  AAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC  500

seq1  ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAGATCAG  550

seq1  GAATTC  556
      ||||||
seq2  GAATTC  556