BAC Information

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BAC

Clone NameB6Ng01-137D20
Chromosome8 (Build37)
Map Location 26,320,351 - 26,412,818
singlet/doubletdoublet
Overlap genenone
Upstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137D20.bB6Ng01-137D20.g
ACCDH936807DH936808
length1,1051,064
definitionDH936807|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D20, 5' end.DH936808|Mus musculus domesticus DNA, BAC clone: B6Ng01-137D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,320,351 - 26,321,467)(26,411,751 - 26,412,818)
sequence
gaattccaagacagcctgggctacagtagaaaacctgataaagaaataaa
cattaaaaagctttattttcagactggagagatgactcagtggttaagaa
cagcatttgttcttccagcggtcccaaagttcaattcccagcaaccacag
ggtggctcacaaccatctgtaatgggatctgatgctctcttctggcatgc
aggtgtatatacagataggacagtcatatacttaaaataaataaataaaa
taaaataagagttttattttccaatttggaagagggaggtgtatctcagc
cttagaatacatgcctagcacagctgaggtttagcactgcaagaaaaaaa
aaaaggaaagaaaggaaaaaaaggcatcttgggtagcacgctgaggctgg
ggaggtaagaaggggcattaagagctcaccccccacagagtactcctctg
gtgctctgtggagccaatggagaagttggcctatgatggtctgatgcaat
caactgcctggagaccaaagtgtgaaccctcattccaaggaggtgtttgc
ctcatgacccaagatgccacacaaaagaccccacccccacccaccccagg
tacgcctacggatgcaaagggtagtcctcaaagacaaaacttcaggccag
ggtataagacatgcacttcatgcaagagatgctaaaggccccatcctccc
atgctctcagtgggcactttctctctcaggatgcctctctatggctagct
tctgagaaagcaaagcaaagagggagctgatactgtaggcctgtaaccaa
aataccaggaggagggataggtgggatcttagaagccagcaagggcttcg
aggcaaggctgtctaaatgcacagggataaaggaaaaccaggaagcaccc
atgagccctgggtcaggattgttgcgggaaatattaaaaatggatcttgc
agcactctgcggggccttaccacgcttctgctgccacatcaacttctctc
agctagccccttgaagcactgtggctgcttgtccggagctgtcggggaac
agctagtactttctctgcataaacccatgtagctggcgattccactcagt
aacta
gaattcctgatgactggctggatctgggaacaagggaaacttgatgggtc
ttggcagagtgggacagtgttgcctttttcactagaaagagtgagctgat
tggaaaggagggctgtagtgggtagtgtagctggccagggaagagtcttt
gcaaaaagaaagatgatttgtttcctctgattatttggacctagcagcac
aaccaatacgaaccccctaaatgctgccccacccatgacaaacattcaca
tatgtatagcaaattttaaaataagaaaatagtcacagacttgcctactt
cattggatagaagaaagaaggaaaggctgaatatggatttaattaataaa
aaccaaaccaaacaaaccaacagaaaaaaacaaccaaacaccagtgaggc
cgcatagcactggagccaacctgatttcaaatctcagcttattagctgta
tgtctaaaggaagttataaaacctctttgtgcctgatttttttttccatc
tgtataaatggcaatggtttacctacttcataaataagaaattttgtatt
gatctgttcatagtgaacaggacactacaagggagaaacaagtagaccaa
gtcagctgtttgttacactcatcaattaagacaataaagcattgaaccgt
ttataaatagtttagaatagtttcaacaatggtaactctctgtgtaaaga
cagtaggataatgttgggaaagtgccgagtgctgagtcttgtctcaggac
atgcttcccattcaacttaaacattacatcattacgtgtgttcgtgtgtg
cctgcacacacacacacacacacacacacacacacacacacacgtgctaa
gatcacgtgacagaggggaagtcagttctctccgcccacctttttgtgta
ccctttgggttgaactccaggtcttcttccaagctttagtgacaagtacc
tttacccagtaaactcctcctgatggctctacaacaattgctttcagtta
aaagaacatttttttttttagattatttatttacatgtgtggagtgtttt
gcctgctacctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26320351_26321467
seq2: B6Ng01-137D20.b_46_1150

seq1  GAATTCCAAGACAGCCTGGGCTACAGTAGAAAACCTGATAAAGAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACAGCCTGGGCTACAGTAGAAAACCTGATAAAGAAATAAA  50

seq1  CATTAAAAAGCTTTATTTTCAGACTGGAGAGATGACTCAGTGGTTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAGCTTTATTTTCAGACTGGAGAGATGACTCAGTGGTTAAGAA  100

seq1  CAGCATTTGTTCTTCCAGCGGTCCCAAAGTTCAATTCCCAGCAACCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTGTTCTTCCAGCGGTCCCAAAGTTCAATTCCCAGCAACCACAG  150

seq1  GGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTGGCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCACAACCATCTGTAATGGGATCTGATGCTCTCTTCTGGCATGC  200

seq1  AGGTGTATATACAGATAGGACAGTCATATACTTAAAATAAATAAATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTATATACAGATAGGACAGTCATATACTTAAAATAAATAAATAAAA  250

seq1  TAAAATAAGAGTTTTATTTTCCAATTTGGAAGAGGGAGGTGTATCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAGAGTTTTATTTTCCAATTTGGAAGAGGGAGGTGTATCTCAGC  300

seq1  CTTAGAATACATGCCTAGCACAGCTGAGGTTTAGCACTGCAAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATACATGCCTAGCACAGCTGAGGTTTAGCACTGCAAGAAAAAAA  350

seq1  AAAAGGAAAGAAAGGAAAAAAAGGCATCTTGGGTAGCACGCTGAGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAAGAAAGGAAAAAAAGGCATCTTGGGTAGCACGCTGAGGCTGG  400

seq1  GGAGGTAAGAAGGGGCATTAAGAGCTCACCCCCCACAGAGTACTCCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAAGAAGGGGCATTAAGAGCTCACCCCCCACAGAGTACTCCTCTG  450

seq1  GTGCTCTGTGGAGCCAATGGAGAAGTTGGCCTATGATGGTCTGATGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTGTGGAGCCAATGGAGAAGTTGGCCTATGATGGTCTGATGCAAT  500

seq1  CAACTGCCTGGAGACCAAAGTGTGAACCCTCATTCCAAGGAGGTGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCTGGAGACCAAAGTGTGAACCCTCATTCCAAGGAGGTGTTTGC  550

seq1  CTCATGACCCAAGATGCCACACAAAAGACCCCACCCCCACCCACCCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGACCCAAGATGCCACACAAAAGACCCCACCCCCACCCACCCCAGG  600

seq1  TACGCCTACGGATGCAAAGGGTAGTCCTCAAAGACAAAACTTCAGGCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCTACGGATGCAAAGGGTAGTCCTCAAAGACAAAACTTCAGGCCAG  650

seq1  GGTATAAGACATGCACTTCATGCAAGAGATGCTAAAGGCCCCATCCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGACATGCACTTCATGCAAGAGATGCTAAAGGCCCCATCCTCCC  700

seq1  ATGCTCTCAGTGGGCACTTTCTCTCTCAGGATGCCTCTCTATGGCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCAGTGGGCACTTTCTCTCTCAGGATGCCTCTCTATGGCTAGCT  750

seq1  TCTGAGAAAGCAAAGCAAAGAGGGAGCTGATACTGTAGGCCTGTAACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAGCAAAGCAAAGAGGGAGCTGATACTGTAGGCCTGTAACCAA  800

seq1  AATACCAGGAGGAGGGATAGGTGGGATCTTAGAAGCCAGCAAGGGCTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGGAGGAGGGATAGGTGGGATCTTAGAAGCCAGCAAGGGCTTCG  850

seq1  AGGCAAGGCTGTCTAAATGCACAGGGATAAAGGAAAACCAGGAAGCACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGCTGTCTAAATGCACAGGGATAAAGGAAAACCAGGAAGCACCC  900

seq1  ATGAGCCCTGGGTCAGGATTGTTGCGGGAAATATTAAAAAATGGATCCTG  950
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  ATGAGCCCTGGGTCAGGATTGTTGCGGGAAATATT-AAAAATGGATCTTG  949

seq1  CCAGCACTCTGCGGGGCCTTACCACGCTCCTGCTGCCACCATCAACTCTC  1000
       ||||||||||||||||||||||||||| ||||||||| |||||||| ||
seq2  -CAGCACTCTGCGGGGCCTTACCACGCTTCTGCTGCCA-CATCAACT-TC  996

seq1  TC-CAGCTAGCCCCCTGAAGCACCTGTGGCTTGCTTGTCCCGGGAGCTGT  1049
      || ||||||||||| ||||||| ||||||| |||||||||  ||||||||
seq2  TCTCAGCTAGCCCCTTGAAGCA-CTGTGGC-TGCTTGTCC--GGAGCTGT  1042

seq1  CCGGGGAACAGCTAGTACTTCCTCTGCCATAAACCCATGTAGCTGGCGAT  1099
       ||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  -CGGGGAACAGCTAGTACTTTCTCTG-CATAAACCCATGTAGCTGGCGAT  1090

seq1  CCCACCTTCCAGTAACTA  1117
       ||||    |||||||||
seq2  TCCAC---TCAGTAACTA  1105

seq1: chr8_26411751_26412818
seq2: B6Ng01-137D20.g_65_1128 (reverse)

seq1  AACAGGTAAGCAGGCAAAAACACT-CACACATGTAAAATAAATAAATCTA  49
      ||||||| ||||||| |||||||| ||||||||| |||||||| ||||||
seq2  AACAGGT-AGCAGGC-AAAACACTCCACACATGT-AAATAAAT-AATCTA  46

seq1  AAAAAAAAAATGTTCTTTTAAACTGAAAGCAAATTGTTGTAGGGCCATCA  99
      ||||||||||||||||||| |||||||||| ||||||||||| |||||||
seq2  AAAAAAAAAATGTTCTTTT-AACTGAAAGC-AATTGTTGTAGAGCCATCA  94

seq1  GGA-GAGTTTACTGGGTAAAGGTACTTGTCACTAAAGCTTGG-AGAAGAC  147
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGGAGTTTACTGGGTAAAGGTACTTGTCACTAAAGCTTGGAAGAAGAC  144

seq1  CT-GAGTTCAACCCCAAGGGTACACAAAAAGGTTGGCGGAGAGAACTGAC  196
      || ||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  CTGGAGTTCAACCCAAAGGGTACACAAAAAGGTGGGCGGAGAGAACTGAC  194

seq1  TTCCCCTCCTGTCACGTGATCTTAGCACGTGTGTGTGTGTGTGTGTGTGT  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCT-CTGTCACGTGATCTTAGCACGTGTGTGTGTGTGTGTGTGTGT  243

seq1  GTGTGTGTGTGTGTGTGCAGGCACACACGAACACACGTAATGATGTAATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGCAGGCACACACGAACACACGTAATGATGTAATG  293

seq1  TTTTAAGTTGAATGGGAAGCATGTCCTGAGACAAGACTCAGCACTCGGCA  346
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTAAGTTGAATGGGAAGCATGTCCTGAGACAAGACTCAGCACTCGGCA  342

seq1  CTTTCCCAACATTATCCTACTGTCTTTACACAGAGAGTTACCATTGTTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAACATTATCCTACTGTCTTTACACAGAGAGTTACCATTGTTGA  392

seq1  AACTATTCTAAACTATTTATAAACGGTTCAATGCTTTATTGTCTTAATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCTAAACTATTTATAAACGGTTCAATGCTTTATTGTCTTAATTG  442

seq1  ATGAGTGTAACAAACAGCTGACTTGGTCTACTTGTTTCTCCCTTGTAGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTAACAAACAGCTGACTTGGTCTACTTGTTTCTCCCTTGTAGTG  492

seq1  TCCTGTTCACTATGAACAGATCAATACAAAATTTCTTATTTATGAAGTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCACTATGAACAGATCAATACAAAATTTCTTATTTATGAAGTAG  542

seq1  GTAAACCATTGCCATTTATACAGATGGAAAAAAAAATCAGGCACAAAGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCATTGCCATTTATACAGATGGAAAAAAAAATCAGGCACAAAGAG  592

seq1  GTTTTATAACTTCCTTTAGACATACAGCTAATAAGCTGAGATTTGAAATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAACTTCCTTTAGACATACAGCTAATAAGCTGAGATTTGAAATC  642

seq1  AGGTTGGCTCCAGTGCTATGCGGCCTCACTGGTGTTTGGTTGTTTTTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCTCCAGTGCTATGCGGCCTCACTGGTGTTTGGTTGTTTTTTTC  692

seq1  TGTTGGTTTGTTTGGTTTGGTTTTTATTAATTAAATCCATATTCAGCCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTTGTTTGGTTTGGTTTTTATTAATTAAATCCATATTCAGCCTT  742

seq1  TCCTTCTTTCTTCTATCCAATGAAGTAGGCAAGTCTGTGACTATTTTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTCTTCTATCCAATGAAGTAGGCAAGTCTGTGACTATTTTCTT  792

seq1  ATTTTAAAATTTGCTATACATATGTGAATGTTTGTCATGGGTGGGGCAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTTGCTATACATATGTGAATGTTTGTCATGGGTGGGGCAGC  842

seq1  ATTTAGGGGGTTCGTATTGGTTGTGCTGCTAGGTCCAAATAATCAGAGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGGGTTCGTATTGGTTGTGCTGCTAGGTCCAAATAATCAGAGGA  892

seq1  AACAAATCATCTTTCTTTTTGCAAAGACTCTTCCCTGGCCAGCTACACTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCATCTTTCTTTTTGCAAAGACTCTTCCCTGGCCAGCTACACTA  942

seq1  CCCACTACAGCCCTCCTTTCCAATCAGCTCACTCTTTCTAGTGAAAAAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTACAGCCCTCCTTTCCAATCAGCTCACTCTTTCTAGTGAAAAAGG  992

seq1  CAACACTGTCCCACTCTGCCAAGACCCATCAAGTTTCCCTTGTTCCCAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTCCCACTCTGCCAAGACCCATCAAGTTTCCCTTGTTCCCAGA  1042

seq1  TCCAGCCAGTCATCAGGAATTC  1068
      ||||||||||||||||||||||
seq2  TCCAGCCAGTCATCAGGAATTC  1064