BAC Information

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BAC

Clone NameB6Ng01-137F05
Chromosome8 (Build37)
Map Location 105,979,929 - 106,135,735
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh11, EG667618, LOC100041368, 1600027J07Rik
Downstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137F05.bB6Ng01-137F05.g
ACCDH936871DH936872
length101904
definitionDH936871|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F05, 5' end.DH936872|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,135,635 - 106,135,735)(105,979,929 - 105,980,829)
sequence
aatcctcatagctggaaaaaaaacctaaatattaaatcaagttgaagaac
acttctgtgatatagaaaaatggtccgggttggggatggtggtggtggtg
g
gaattctgtcctttctagcctcaacaggctccggacacatggaattttac
gtcgttattcagagtgctcgctaggcttgcatttaagagaatgatgtttc
cccaacttaatgtaatattgctattggcaaatagatcacttttagagtta
tcgaacctgccaacttttatatccaccaaggtaaaaacactcactagatt
tttgtcttttcattctctcaacggactttaatagattcctgtctaggatc
aaaaggttggatgaatactggccatgcataaagtctcgtgggttaattaa
gatgatcattagccactcgggctcatgcttagctccgtgatttgtaggta
gcaagtttgcatccatcagacatagttgctccactaggacctccgtgtgc
accgagaatgttgaagcagatagaagacccttgcagcacacccagctttc
tgagtgcctgttctgctgatggccatctgaactccttttccttggtttga
cccctcaagctactgtggtaggaattttcatttgaacatttgtgagcaat
gttttcactatttggattaagtcctggtattctctgttgatatgtgtctg
tgttatagactgggagttgaagtggtgtatccattctgtctcctccttct
gtaccttttattcatcattcagctacccatgggagcacatagtatgctct
actgctagatgagggataaaataaggtgggaaaatgcagtctgtgtccca
gccaagtgcaaggggaagggggaaccgggacaattgtggtaactgattaa
atggagataaatggcctgctcctggataactattttctgtcctttgaagg
accagaaaaactaagatgggaaaaagggagtgattggtaaagaggctatc
ccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_106135635_106135735
seq2: B6Ng01-137F05.b_51_151 (reverse)

seq1  CCACCACCACCACCATCCCCAACCCGGACCATTTTTCTATATCACAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCACCACCATCCCCAACCCGGACCATTTTTCTATATCACAGAAG  50

seq1  TGTTCTTCAACTTGATTTAATATTTAGGTTTTTTTTCCAGCTATGAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCAACTTGATTTAATATTTAGGTTTTTTTTCCAGCTATGAGGAT  100

seq1  T  101
      |
seq2  T  101

seq1: chr8_105979929_105980829
seq2: B6Ng01-137F05.g_72_975

seq1  GAATTCTGTCCTTTCTAGCCTCAACAGGCTCCGGACACATGGAATTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCTTTCTAGCCTCAACAGGCTCCGGACACATGGAATTTTAC  50

seq1  GTCGTTATTCAGAGTGCTCGCTAGGCTTGCATTTAAGAGAATGATGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTATTCAGAGTGCTCGCTAGGCTTGCATTTAAGAGAATGATGTTTC  100

seq1  CCCAACTTAATGTAATATTGCTATTGGCAAATAGATCACTTTTAGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTAATGTAATATTGCTATTGGCAAATAGATCACTTTTAGAGTTA  150

seq1  TCGAACCTGCCAACTTTTATATCCACCAAGGTAAAAACACTCACTAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACCTGCCAACTTTTATATCCACCAAGGTAAAAACACTCACTAGATT  200

seq1  TTTGTCTTTTCATTCTCTCAACGGACTTTAATAGATTCCTGTCTAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTCATTCTCTCAACGGACTTTAATAGATTCCTGTCTAGGATC  250

seq1  AAAAGGTTGGATGAATACTGGCCATGCATAAAGTCTCGTGGGTTAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTGGATGAATACTGGCCATGCATAAAGTCTCGTGGGTTAATTAA  300

seq1  GATGATCATTAGCCACTCGGGCTCATGCTTAGCTCCGTGATTTGTAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCATTAGCCACTCGGGCTCATGCTTAGCTCCGTGATTTGTAGGTA  350

seq1  GCAAGTTTGCATCCATCAGACATAGTTGCTCCACTAGGACCTCCGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTGCATCCATCAGACATAGTTGCTCCACTAGGACCTCCGTGTGC  400

seq1  ACCGAGAATGTTGAAGCAGATAGAAGACCCTTGCAGCACACCCAGCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGAATGTTGAAGCAGATAGAAGACCCTTGCAGCACACCCAGCTTTC  450

seq1  TGAGTGCCTGTTCTGCTGATGGCCATCTGAACTCCTTTTCCTTGGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCTGTTCTGCTGATGGCCATCTGAACTCCTTTTCCTTGGTTTGA  500

seq1  CCCCTCAAGCTACTGTGGTAGGAATTTTCATTTGAACATTTGTGAGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAAGCTACTGTGGTAGGAATTTTCATTTGAACATTTGTGAGCAAT  550

seq1  GTTTTCACTATTTGGATTAAGTCCTGGTATTCTCTGTTGATATGTGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACTATTTGGATTAAGTCCTGGTATTCTCTGTTGATATGTGTCTG  600

seq1  TGTTATAGACTGGGAGTTGAAGTGGTGTATCCATTCTGTCTCCTCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGACTGGGAGTTGAAGTGGTGTATCCATTCTGTCTCCTCCTTCT  650

seq1  GTACCTTTTATTCATCATTCAGCTACCCAT-GGAGCACATAGTATGCTCT  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTACCTTTTATTCATCATTCAGCTACCCATGGGAGCACATAGTATGCTCT  700

seq1  ACTGCTAGATGAGGGATAAAATAAGGT-GGAAAATGCAGTCTGTGTCCCA  748
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTGCTAGATGAGGGATAAAATAAGGTGGGAAAATGCAGTCTGTGTCCCA  750

seq1  GCCAAGTGCAAGGGGAAGGGGGAACCGGGACAA-TGTGGTAACTGATTAA  797
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCCAAGTGCAAGGGGAAGGGGGAACCGGGACAATTGTGGTAACTGATTAA  800

seq1  ATGGAGATAAATGGCCTGCT-CTGGATAACTA-TTTCTGTACCTTGAAGG  845
      |||||||||||||||||||| ||||||||||| ||||||| | |||||||
seq2  ATGGAGATAAATGGCCTGCTCCTGGATAACTATTTTCTGTCCTTTGAAGG  850

seq1  ACCAGAAAAACTAAGATGGGTAAATAGGGAGTGATTGGTAAAAGAGGCTA  895
      |||||||||||||||||||| ||| |||||||||||||| ||||||||||
seq2  ACCAGAAAAACTAAGATGGG-AAAAAGGGAGTGATTGGT-AAAGAGGCTA  898

seq1  TCCCAG  901
      ||||||
seq2  TCCCAG  904