BAC Information

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BAC

Clone NameB6Ng01-137O02
Chromosome16 (Build37)8 (Build37)
Map Location 64,999,564 - 65,000,025106,145,580 - 106,146,640
singlet/doubletsingletsinglet
Overlap geneHtr1f
Upstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448
Downstream geneLOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137O02.bB6Ng01-137O02.g
ACCDH937280DH937281
length1,1191,064
definitionDH937280|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O02, 5' end.DH937281|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,999,564 - 65,000,025)(106,145,580 - 106,146,640)
sequence
gaattctttacagaacaatgccaattaattaacgtggagtcaatggaaaa
accataatttacaatactcatacagtcatgggttcacacatagttcaaat
tgatgttgagaatggggggaacagcatattcatacgtttttcaagattaa
ctacacattatgggggaaagatggtcttttgtaggtgagagatctggtag
ttacgaccttaactgagtgattagactttgcatgaccaagtgtgggaaac
atgacctcatgggccttcctttgtgatacaaggaaaagtccaaggcatca
cctatatgggatttttgcctataatggttgctctgaatctactgaagaag
caaatacataggaacagagcttttcaaaccatcactcttcatttaaagga
aagccactgtccatgagagacactagaaggtatggatatcacatgtcaaa
gatgtatgtgaatcttggtccgggacccgccgaacttaggaaattagtct
gaacaggtgagagggtgcgccagagaacctgacagcttctggaacaggcg
gaagcacagaggcgctgaggcagcaccctgtgtgggccggggacagccag
ccaccgtccggaccggaggacaggtgcccgcccggctggggaggcggcct
aagccacagcagcagcggtcgccatcttggtccgggacccgccgaactta
ggaaattagcctgaacaggtgagagggtgcgccagagaacctgacagctt
ctggaacaggcggaagcacagaggcgctgaggcagcaccctgtgtgggcc
ggggacagccagccaccgtccggaccggaggacaggtgcccgcccggctg
gggaggcgaccttagccacagcagcagcggtcgccatctttggttcccgg
gactccaaggaacttaggaatttagtctgcttaggtgagagtctggtacc
acctgggatctggcctaagcaacacagtttctgagaaaggtcctgttttg
ggcctcttcttcggcaggaggaggtcaatacaagaaaatctgccaacctt
ccctgtagagagcttgtcagcaaaaaggctctgagcactgaactctagag
agagaaatctggttcccag
gaattccaattcaggaacctggagacaggatcttaagcagagaccatgag
ggggtactgctaattggctggtttttcatggatcaaccagttttcttttt
aatacaacctaggaccaactaactagtggtggcaccacccagtggcctgg
gtccttctacatgaatcattaatcaagaaaatactcccattgactgatgg
aaggattttctcaattgaatttccctcttcccagataaccctaccttgca
tcaaattgacaaaaactaaacctatacagttctcacctttgttttgaaga
caggatctctaacgggacctacaggtcgctcgctgatttctatagactga
ctggacagggcttcccaggaatctacggtctctgctgcctcagtgttgga
attataggcatgcccggggtttgttacactggttcttggggatcgaactc
ggcttcttatgcttgtgttgcaagcacttttcagacaacacttccacaaa
atgtactgtctgccagcaaaggcagaacacctggaagctcggtgtgttta
ttccattgaacatgaggtaggattgttatatacacatatccaaggagaca
gggtttgttgtacacacctggattaaggggacaggtttaactaattttag
gaggagcagtctctgtcaaggaacagtctttcaggccataatactcagga
ggagaaagcaatggtagacattttctgcacacactgttgacactcaaacc
ctgtctccagagcaaggtttccgccatgtctctgagcctaaggctctgta
ttccttgacataactgttcccatgtcaaactatacacacccactcagagc
attactttaactctgggcttcctgtgggtccccacactaagccatcttcc
ccaagcctatatcctgagtacttcaatcatttttgcctagagtagaaaat
tatttggttactctggatggtaagagtagccaatcttggaattactaaaa
aatattatatccattggaccttcaacttttatacatattatactcttgcc
tgggtttatttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_64999564_65000025
seq2: B6Ng01-137O02.b_700_1161 (reverse)

seq1  CTGGGAGACAGATTCTCTC-CTCT-GAGTTTCAGTGCTCAGAGCACTCTC  48
      ||||||  |||||| |||| |||| ||| ||||||||||||||| || | 
seq2  CTGGGAACCAGATT-TCTCTCTCTAGAG-TTCAGTGCTCAGAGC-CTTTT  47

seq1  TGCTGGCAAGCTCTCTTACAGGGAAGGTGCGCAGA-TATCTTGTATTTGG  97
      ||||| ||||||||| ||||||||||||  ||||| | |||||||||  |
seq2  TGCTGACAAGCTCTC-TACAGGGAAGGTTGGCAGATTTTCTTGTATT--G  94

seq1  ACCTCCTCCTGGCCGAAGAAGAAGGCCCAAAACAGGACCTTTCTCAGACA  147
      |||||||||| |||||||||| |||||||||||||||||||||||||| |
seq2  ACCTCCTCCT-GCCGAAGAAG-AGGCCCAAAACAGGACCTTTCTCAGAAA  142

seq1  CTGTGTTGCTTTG--CAGTTCCCAGGTGGTA-CAGACTCTCACCTAAGCA  194
      ||||||||||| |  ||| |||||||||||| ||||||||||||||||||
seq2  CTGTGTTGCTTAGGCCAGATCCCAGGTGGTACCAGACTCTCACCTAAGCA  192

seq1  GACTAAATTCCTAAGTTCCTTGGAGTCCCGGGA--CCAAGATGGCGACCG  242
      |||||||||||||||||||||||||||||||||  | |||||||||||||
seq2  GACTAAATTCCTAAGTTCCTTGGAGTCCCGGGAACCAAAGATGGCGACCG  242

seq1  CTGCTGCTGTGGCTTAGGCCGCCTCCCCAGCCGGGCGGGCACCTGTCCTC  292
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CTGCTGCTGTGGCTAAGGTCGCCTCCCCAGCCGGGCGGGCACCTGTCCTC  292

seq1  CGGTCCGGAAGGTGGCCGGCTGTCCCCGGCCCACACAGGGTGCTGCCTCA  342
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CGGTCCGGACGGTGGCTGGCTGTCCCCGGCCCACACAGGGTGCTGCCTCA  342

seq1  GCCCCTCTGTGCTTCTGCCTGTTCCAGAGGCTGTCAGGTTCTCTGGCGCA  392
      || |||||||||||| |||||||||||| |||||||||||||||||||||
seq2  GCGCCTCTGTGCTTCCGCCTGTTCCAGAAGCTGTCAGGTTCTCTGGCGCA  392

seq1  CCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCGGGTCTCGGACCA  442
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  CCCTCTCACCTGTTCAGGCTAATTTCCTAAGTTCGGCGGGTCCCGGACCA  442

seq1  AGATGGCGACCGCTGCTGCT  462
      ||||||||||||||||||||
seq2  AGATGGCGACCGCTGCTGCT  462

seq1: chr8_106145580_106146640
seq2: B6Ng01-137O02.g_72_1135

seq1  GAATTCCAA-GCAGGAACCTGGAGACAGGATCTTAAGCAGAGACCATGAG  49
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTCAGGAACCTGGAGACAGGATCTTAAGCAGAGACCATGAG  50

seq1  GGGGTACTGCTAATTGGCTGGTTTTTCATGGATCAACCAGTTTTCTTTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGCTAATTGGCTGGTTTTTCATGGATCAACCAGTTTTCTTTTT  100

seq1  AATACAACCTAGGACCAACTAACTAGTGGTGGCACCACCCAGTGGCCTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAACCTAGGACCAACTAACTAGTGGTGGCACCACCCAGTGGCCTGG  150

seq1  GTCCTTCTACATGAATCATTAATCAAGAAAATACTCCCATTGACTGATGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTACATGAATCATTAATCAAGAAAATACTCCCATTGACTGATGG  200

seq1  AAGGATTTTCTCAATTGAATTTCCCTCTTCCCAGATAACCCTACCTTGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTCTCAATTGAATTTCCCTCTTCCCAGATAACCCTACCTTGCA  250

seq1  TCAAATTGACAAAAACTAAACCTATACAGTTCTCACCTTTGTTTTGAAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGACAAAAACTAAACCTATACAGTTCTCACCTTTGTTTTGAAGA  300

seq1  CAGGATCTCTAACGGGACCTACAGGTCGCTCGCTGATTTCTATAGACTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTCTAACGGGACCTACAGGTCGCTCGCTGATTTCTATAGACTGA  350

seq1  CTGGACAGGGCTTCCCAGGAATCTACGGTCTCTGCTGCCTCAGTGTTGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGGGCTTCCCAGGAATCTACGGTCTCTGCTGCCTCAGTGTTGGA  400

seq1  ATTATAGGCATGCCCGGGGTTTGTTACACTGGTTCTTGGGGATCGAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGCATGCCCGGGGTTTGTTACACTGGTTCTTGGGGATCGAACTC  450

seq1  GGCTTCTTATGCTTGTGTTGCAAGCACTTTTCAGACAACACTTCCACAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTATGCTTGTGTTGCAAGCACTTTTCAGACAACACTTCCACAAA  500

seq1  ATGTACTGTCTGCCAGCAAAGGCAGAACACCTGGAAGCTCGGTGTGTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTGTCTGCCAGCAAAGGCAGAACACCTGGAAGCTCGGTGTGTTTA  550

seq1  TTCCATTGAACATGAGGTAGGATTGTTATATACACATATCCAAGGAGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGAACATGAGGTAGGATTGTTATATACACATATCCAAGGAGACA  600

seq1  GGGTTTGTTGTACACACCTGGATTAAGGGGACAGGTTTAACTAATTTTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGTTGTACACACCTGGATTAAGGGGACAGGTTTAACTAATTTTAG  650

seq1  GAGGAGCAGTCTCTGTCAAGGAACAGTC-TTCAGGCCATAAATACTCAGG  698
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  GAGGAGCAGTCTCTGTCAAGGAACAGTCTTTCAGGCCAT-AATACTCAGG  699

seq1  AGGAGAAAGCAATGGTAGACATTTTCTGCACACACTGTTGACACTCAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAGCAATGGTAGACATTTTCTGCACACACTGTTGACACTCAAAC  749

seq1  CCTGTCTCCAGAGCAAGG-TTCCGCCATGTCTCTGAGCCTAAGGCTCTGT  797
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTGTCTCCAGAGCAAGGTTTCCGCCATGTCTCTGAGCCTAAGGCTCTGT  799

seq1  ATTCCTTGACATAACTGTTCCCATGTCAAACTATACACACCCACTCAGAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGACATAACTGTTCCCATGTCAAACTATACACACCCACTCAGAG  849

seq1  CATTAC-TTAACTCT-GGCTTCCTGT-GGTCCCCACACTAAGCCATCTTC  894
      |||||| |||||||| |||||||||| |||||||||||||||||||||||
seq2  CATTACTTTAACTCTGGGCTTCCTGTGGGTCCCCACACTAAGCCATCTTC  899

seq1  CCCAAGCC-ATATCCTGAGTACTCAATTCATTTTTG-CTAGAGTTGAACA  942
      |||||||| ||||||||||||||  | ||||||||| ||||||| ||| |
seq2  CCCAAGCCTATATCCTGAGTACTTCAATCATTTTTGCCTAGAGTAGAAAA  949

seq1  TATTTTGTTAACTCTGAATGGTAAGAGTAGCCAATCTTGGAATTACTAAA  992
      |  |||| | |||||| |||||||||||||||||||||||||||||||||
seq2  TTATTTGGTTACTCTGGATGGTAAGAGTAGCCAATCTTGGAATTACTAAA  999

seq1  ATATATTATATCCCATTTGACCTTCATACTTTTATACATATTATACTCTT  1042
      | ||||||||| ||||| |||||||| ||||||||||||||||||||| |
seq2  AAATATTATAT-CCATTGGACCTTCA-ACTTTTATACATATTATACTC-T  1046

seq1  TGCCTGGGGTTTATTTCTT  1061
      ||||| |||||||||||||
seq2  TGCCT-GGGTTTATTTCTT  1064