BAC Information

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BAC

Clone NameB6Ng01-138F07
Chromosome8 (Build37)
Map Location 18,399,821 - 18,553,460
singlet/doubletdoublet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138F07.bB6Ng01-138F07.g
ACCDH937622DH937623
length1,1301,100
definitionDH937622|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F07, 5' end.DH937623|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,552,325 - 18,553,460)(18,399,821 - 18,400,952)
sequence
gaattcaagtacttaacattctccacttcctgacttcagatacaatgtaa
ccaactgcctcaaactcctgcctccatggcttcccttcaatgatggactg
tactcttgaactgtgagctgaaataaaccccttctcccttaagttgcact
tgtcaggatatttcatcagtgcaataggaagagttgctaagagactatgt
attgctaagagactatgtataagagctaagctatataatttacatgcata
tcacaccaagtggccataaattccacataggattgtgatggatatagttt
atctttcagttgaggaatccaaaacctagagagaatgaatatctggtttg
atgtctgcctgctagtagatattataagcacaatggaattaggctccact
ggctcttaaaactaaattttttttaattaggtattttcctcgtttacatt
ttcaatgctatcccaaaggtcccccataccccccccccgaatcccctacc
cacccactcccaaaactaaatttctgtaagactttgctgatgactcagtg
gttaagaggatttgctccccttctagaggactttagttcagctcctaact
cacaactgcctgtaacttcagcttcaatggatttgatgtctcctgatgtt
gacctctgggatttatatacacaggtacacacacacacacacacacacac
acacacacacacacacacacatccacacacagacagacacatagacatac
atacaatgcacagacacaaagtaaacaacacatttgctaatcataaaatt
ttactacatagatttttcaaattatcatctctcttttttaaaaatacaat
ttattgaacctaggggcttcagtatcatgggcaaagcacattatgcagtg
agaaacaacagtctgtctcaatgactcagagccggctttgtttgtttgat
tttgtccgtacttcgtcttcatctttctaaaggagtgtctagctccagag
tgatctagtttgggagaactgggtggagcatgtctgaggcagcatcctta
tgacagcagctaggaaatcagcccaacttcgagaagagaaatagggagca
ggaaaatgaaacctctccgcctgggaaatg
gaattcttagaagatacctacatggcaggatccctggatcagggaggaag
ttcaacactgatgtttaaagatataacacagcatgtacatagagaggccc
actcagctgtctactgctggggaaatacatcattgtgaccaaagccaatc
aaatgaccacccatgggagccaggactgtgcaggtgataaccccaaaggg
aattatattaggggcagtgagttcattagggagctagtgactgccactag
gagagtctcaattaataaacagcaaaccaagaaaaaggagcagggggtga
aattattgctcagccaagcagaatgcaagagcataacagtaatcatggta
attacaaaacgtggcttcaatgaaaaaggcagagaagattctgacctagg
caaatagcctaggtcaaacaatctgtggccacattacctatgcaggggct
agcagtggggaagggccactttccttcaaggtacaagcacactaaatacc
ctgtacttcaaagagtgccaacataaccaattaggggaaccttttttatt
gtgtcatagtgacaagaaaatggctaccacatctgaacatgctctgtctt
caagacaatgtttggctccacccacagtcttggtgagataaatacagagg
cagctcctcatttgtttaatagcccctgcccactctattgacagagttac
aatgtggcttttgtgtgtgttgctactttttctaggaggaagggaagaat
taattttaaaagttaataaaaataatgtaaactttgcatcaatatgaaaa
gataaagttgggcaaacaaggccttgttcctgtcccactctcaatttgga
tctgaacaaaattggaaaacaaaggtttaaggtacaaattccttacagaa
ggaagccatagatacatcatccatactcttttcatttcatgaacacaatt
aaaacatatcagtttcttgcttgggccacattctcaatgaaacagacata
agatatgttacgaacacactctgctcccctttctctcaagtcatgaccta
ggtagatgctagactgtgaaatgggttattctgggtgtgttgcatagaca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_18552325_18553460
seq2: B6Ng01-138F07.b_48_1177 (reverse)

seq1  CATTTCCCAGCTGGAG-GGTTTCA-TTTCCTGCTCACTA-TTCTCTTCTC  47
      ||||||||||  |||| ||||||| |||||||||| ||| ||||||||||
seq2  CATTTCCCAGGCGGAGAGGTTTCATTTTCCTGCTCCCTATTTCTCTTCTC  50

seq1  GAAGTTGGGCTGATTTCTTAGCTGCTGTCATTAAGGATGCTGCCTCAGAC  97
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  GAAGTTGGGCTGATTTCCTAGCTGCTGTCA-TAAGGATGCTGCCTCAGAC  99

seq1  ATGGCTCCACACAGTTCTCCCAAACTGAGACTCACTCTGGAGCTAGACAC  147
      || ||||||| ||||||||||||||| ||| |||||||||||||||||||
seq2  AT-GCTCCACCCAGTTCTCCCAAACT-AGA-TCACTCTGGAGCTAGACAC  146

seq1  TCCCTTTAGAAAGGATGAAGACGAAGTACGGACAAAAATGCAAACAAACA  197
      | |||||||||| ||||||||||||||||||||||||   ||||||||||
seq2  T-CCTTTAGAAA-GATGAAGACGAAGTACGGACAAAA--TCAAACAAACA  192

seq1  AAGCCGGCTCTGGAGTCATTGAGACAGACTGTTG-TTCTCACTGCATAAT  246
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  AAGCCGGCTCT-GAGTCATTGAGACAGACTGTTGTTTCTCACTGCATAAT  241

seq1  GTGCTTTGCCCATGATACTTGAAGCCCCTAGGTTCAATAAATTGTATTTT  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTGCTTTGCCCATGATAC-TGAAGCCCCTAGGTTCAATAAATTGTATTTT  290

seq1  TAAAAAAGAGAGATGATAATTTGAAAAATCTATGTAGTAAAATTTTATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAGAGATGATAATTTGAAAAATCTATGTAGTAAAATTTTATGA  340

seq1  TTAGCAAATGTGTTGTTTACTTTGTGTCTGTGCATTGTATGTATGTCTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAATGTGTTGTTTACTTTGTGTCTGTGCATTGTATGTATGTCTAT  390

seq1  GTGTCTGTCTGTGTGTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTCTGTGTGTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  440

seq1  GTGTGTGTGTGTGTACCTGTGTATATAAATCCCAGAGGTCAACATCAGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTACCTGTGTATATAAATCCCAGAGGTCAACATCAGGA  490

seq1  GACATCAAATCCATTGAAGCTGAAGTTACAGGCAGTTGTGAGTTAGGAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAAATCCATTGAAGCTGAAGTTACAGGCAGTTGTGAGTTAGGAGC  540

seq1  TGAACTAAAGTCCTCTAGAAGGGGAGCAAATCCTCTTAACCACTGAGTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAAGTCCTCTAGAAGGGGAGCAAATCCTCTTAACCACTGAGTCA  590

seq1  TCAGCAAAGTCTTACAGAAATTTAGTTTTGGGAGTGGGTGGGTAGGGGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAGTCTTACAGAAATTTAGTTTTGGGAGTGGGTGGGTAGGGGAT  640

seq1  TCGGGGGGGGGGTATGGGGGACCTTTGGGATAGCATTGAAAATGTAAACG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGGGGGGGTATGGGGGACCTTTGGGATAGCATTGAAAATGTAAACG  690

seq1  AGGAAAATACCTAATTAAAAAAAATTTAGTTTTAAGAGCCAGTGGAGCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATACCTAATTAAAAAAAATTTAGTTTTAAGAGCCAGTGGAGCCT  740

seq1  AATTCCATTGTGCTTATAATATCTACTAGCAGGCAGACATCAAACCAGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATTGTGCTTATAATATCTACTAGCAGGCAGACATCAAACCAGAT  790

seq1  ATTCATTCTCTCTAGGTTTTGGATTCCTCAACTGAAAGATAAACTATATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTCTCTAGGTTTTGGATTCCTCAACTGAAAGATAAACTATATC  840

seq1  CATCACAATCCTATGTGGAATTTATGGCCACTTGGTGTGATATGCATGTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAATCCTATGTGGAATTTATGGCCACTTGGTGTGATATGCATGTA  890

seq1  AATTATATAGCTTAGCTCTTATACATAGTCTCTTAGCAATACATAGTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATAGCTTAGCTCTTATACATAGTCTCTTAGCAATACATAGTCTC  940

seq1  TTAGCAACTCTTCCTATTGCACTGATGAAATATCCTGACAAGTGCAACTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACTCTTCCTATTGCACTGATGAAATATCCTGACAAGTGCAACTT  990

seq1  AAGGGAGAAGGGGTTTATTTCAGCTCACAGTTCAAGAGTACAGTCCATCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAAGGGGTTTATTTCAGCTCACAGTTCAAGAGTACAGTCCATCA  1040

seq1  TTGAAGGGAAGCCATGGAGGCAGGAGTTTGAGGCAGTTGGTTACATTGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGAAGCCATGGAGGCAGGAGTTTGAGGCAGTTGGTTACATTGTA  1090

seq1  TCTGAAGTCAGGAAGTGGAGAATGTTAAGTACTTGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCAGGAAGTGGAGAATGTTAAGTACTTGAATTC  1130

seq1: chr8_18399821_18400952
seq2: B6Ng01-138F07.g_67_1166

seq1  GAATTCTTAGAAGATACCTACATGGCAGGATCCCTGGATCAGGGAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAAGATACCTACATGGCAGGATCCCTGGATCAGGGAGGAAG  50

seq1  TTCAACACTGATGTTTAAAGATATAACACAGCATGTACATAGAGAGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTGATGTTTAAAGATATAACACAGCATGTACATAGAGAGGCCC  100

seq1  ACTCAGCTGTCTACTGCTGGGGAAATACATCATTGTGACCAAAGCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTGTCTACTGCTGGGGAAATACATCATTGTGACCAAAGCCAATC  150

seq1  AAATGACCACCCATGGGAGCCAGGACTGTGCAGGTGATAACCCCAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCACCCATGGGAGCCAGGACTGTGCAGGTGATAACCCCAAAGGG  200

seq1  AATTATATTAGGGGCAGTGAGTTCATTAGGGAGCTAGTGACTGCCACTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTAGGGGCAGTGAGTTCATTAGGGAGCTAGTGACTGCCACTAG  250

seq1  GAGAGTCTCAATTAATAAACAGCAAACCAAGAAAAAGGAGCAGGGGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTCAATTAATAAACAGCAAACCAAGAAAAAGGAGCAGGGGGTGA  300

seq1  AATTATTGCTCAGCCAAGCAGAATGCAAGAGCATAACAGTAATCATGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGCTCAGCCAAGCAGAATGCAAGAGCATAACAGTAATCATGGTA  350

seq1  ATTACAAAACGTGGCTTCAATGAAAAAGGCAGAGAAGATTCTGACCTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAAACGTGGCTTCAATGAAAAAGGCAGAGAAGATTCTGACCTAGG  400

seq1  CAAATAGCCTAGGTCAAACAATCTGTGGCCACATTACCTATGCAGGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCCTAGGTCAAACAATCTGTGGCCACATTACCTATGCAGGGGCT  450

seq1  AGCAGTGGGGAAGGGCCACTTTCCTTCAAGGTACAAGCACACTAAATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGGGAAGGGCCACTTTCCTTCAAGGTACAAGCACACTAAATACC  500

seq1  CTGTACTTCAAAGAGTGCCAACATAACCAATTAGGGGAACCTTTTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTCAAAGAGTGCCAACATAACCAATTAGGGGAACCTTTTTTATT  550

seq1  GTGTCATAGTGACAAGAAAATGGCTACCACATCTGAACATGCTCTGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATAGTGACAAGAAAATGGCTACCACATCTGAACATGCTCTGTCTT  600

seq1  CAAGACAATGTTTGGCTCCACCCACAGTCTTGGTGAGATAAATACAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAATGTTTGGCTCCACCCACAGTCTTGGTGAGATAAATACAGAGG  650

seq1  CAGCTCCTCATTTGTTTAATAGCCCCTGCCCACTCTATTGACAGAGTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTCATTTGTTTAATAGCCCCTGCCCACTCTATTGACAGAGTTAC  700

seq1  AATGTGGCTTTTGTGTGTGTTGCTACTTTTTCTAGGAGGAAGGGAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGTGGCTTTTGTGTGTGTTGCTACTTTTTCTAGGAGGAAGGGAAG-AA  749

seq1  TTAATTTTAAAAGTTAATAAAAATAATGTAAACTTTGCATCAATATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAAAAGTTAATAAAAATAATGTAAACTTTGCATCAATATGAAA  799

seq1  AGATAAAGTTGGGCAAACAAGGCCTTGTTCCTGTCCCACTCTCAATTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGTTGGGCAAACAAGGCCTTGTTCCTGTCCCACTCTCAATTTGG  849

seq1  ATCTGAACAAAATT-GAAAACAAAAAGGTTTTAAGGTTACAAATTCCTTA  899
      |||||||||||||| |||||||||   | ||||||| |||||||||||||
seq2  ATCTGAACAAAATTGGAAAACAAA---GGTTTAAGG-TACAAATTCCTTA  895

seq1  CAAGAAAGGAAGCCATAGATAACCATCATCCATAACTCTTTTCCATTTCA  949
      ||   ||||||||||||||||  |||||||||| |||||||| |||||||
seq2  CA--GAAGGAAGCCATAGATA--CATCATCCAT-ACTCTTTT-CATTTCA  939

seq1  TGACACACAATTTAAAAACATATCAAGTTTCTGCCTTGGGCCACATTCTT  999
      ||| ||||||||  |||||||||| |||||||  ||||||||||||||| 
seq2  TGA-ACACAATT--AAAACATATC-AGTTTCTTGCTTGGGCCACATTCT-  984

seq1  CAAATGAAAACAGACATAAGATATGTTTACGAACACCACTTCTGCTTCCC  1049
        |||| |||||||||||||||||| ||||||||| ||| ||||||  ||
seq2  -CAATG-AAACAGACATAAGATATG-TTACGAACA-CAC-TCTGCT--CC  1027

seq1  CCTTCCTCTCCAAAGTCCATGAACACTAAGTGAGGATGCTAGACTGTAGA  1099
      |||| |||||  |||| |||||   ||| ||   ||||||||||||| ||
seq2  CCTTTCTCTC--AAGT-CATGA--CCTAGGT--AGATGCTAGACTGT-GA  1069

seq1  ACATGGGTTATTCTGGTTGTGTTTGCATAGACA  1132
      | |||||||||||||| |||| |||||||||||
seq2  A-ATGGGTTATTCTGGGTGTG-TTGCATAGACA  1100