BAC Information

Click to search

BAC

Clone NameB6Ng01-138I20
Chromosome8 (Build37)
Map Location 92,588,369 - 92,760,488
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138I20.bB6Ng01-138I20.g
ACCDH937781DH937782
length1,0891,036
definitionDH937781|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I20, 5' end.DH937782|Mus musculus domesticus DNA, BAC clone: B6Ng01-138I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,588,369 - 92,589,475)(92,759,440 - 92,760,488)
sequence
gaattcatagggcctcctaatgcacttaatacggcgtgactgatgaaatg
tggcaggcacaacacaatatctagttttctgaaaacctcactgaaatgaa
ccatcctggccggagagttaaaacagtacagagcctggaacaactagcaa
agttatttttccctgattcttttgtctgcccgggccctttgtgatttgga
ttacaaagcactatctgtgtattttctgatggcgggtgacagctactgtt
tattcccagaaactcaaattaatggttttgttaaatcgactttcagcagt
gcacacataagtcatcccctggggaatctgtcgaaaggtccaagccagct
tctgtgtgcttcaaaaggagtgttcttaagcaaacagcgagaaaattggt
tacctgaatcctgaaagtcaattgaagtgccgcctgcaaggacatgggag
ggtcagaaggaataagtataaagtagggagcgacttcattggctcttccc
tagcgtaacagtcatgtcagtaaaagggagggcagctaagttcataggga
ggactcagaaggccttggtttcctgcttggctcttcggtctctctcaggc
tgtcttgtcccatctctaagacacaaccccacagaggaccatgaaatgca
ataataatggctgaggtgtagctcagtggtggggcactggcctagaatac
aggaagctgtcagtccgagttctagcaccacgggcacagttacaaattag
aaaatactttatagatgaaaaacaccataaaaattatgggaggttgggtt
gccttttagatccttagttgaattttcagaatttcaggtttatgatctgt
attcagaaaagcaagagatgggagtcacttctgatgtatcaggtgggaca
catcttgtgaaccaagtgtcagtgatacattaagtgaaaatgagagagac
catgtccttagagtatgaaaaggagaggacgatgcccagtatgcattcct
tatgagcactctgtctccttcttagcaggtcatcttcacaggctgagaga
gctagctagagagaacagcatgtctcatcatgtgcctca
gaattcattttttatttaatttatactttccatcctaagacctttatgga
tggaatggggttgtatatggaacgtgatctctaatgatacaacatggtga
ggatggccttgaggagaggagggtgggctgtgactgagagatgtagggtc
gtgttttccctgtttgtatatgttcaaaattgtccatgatgtgccatagc
aacaaatgaccaggaaccttaacaagatgtaacagcaccaaagacagata
taattggttttgagtgtgtcttaggcatggcttgttatgagctcctataa
gtcctgatcatgtgagaaccttcggaacagactctgatagctcactgtta
ggacataagattgtactccagtgagaaatggtaccattgggaaatggtga
gctttggaatgctagggtctgacctgtgacctgggcttgaaacagataat
tttggatgctgggtgtatataaccaaagccaaatcaacaagtgacagata
aaagcaatttaaaagccagcctgataaagactacaaaaggaactgaatgc
agagagaatggctgaccgtacacacccagaaccactgaccatgtaaagaa
gggcattccaaaatatgctcgggtgttgcaggtctttgagtgacattatg
atattgcccagaaaatccctacagcatgagaaaaaccacattaaaatctt
tttttcctgtcactcaacacaacgagtggaacagttagttacacagtctt
tgctttgatttctgactttttaaaaaaaagatctatttattatgtataca
gtgttctgcttgtatttatgcctgcaggccagaagaggacaccagatctc
attatagatggttgtgagccacaatatggttgctagaaattcaactgagg
acctctggaagagcaaccaatgctcttaacctcttagcctttgatttcgg
tttttttttatgaccaaagatgttttggggttggttatttgttgtttggt
ttgtttggggtttcagggggaaggaatttgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_92588369_92589475
seq2: B6Ng01-138I20.b_42_1130

seq1  GAATTCATAGGGCCTCCTAATGCACTTAATACGGCGTGACTGATGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGGCCTCCTAATGCACTTAATACGGCGTGACTGATGAAATG  50

seq1  TGGCAGGCACAACACAATATCTAGTTTTCTGAAAACCTCACTGAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCACAACACAATATCTAGTTTTCTGAAAACCTCACTGAAATGAA  100

seq1  CCATCCTGGCCGGAGAGTTAAAACAGTACAGAGCCTGGAACAACTAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTGGCCGGAGAGTTAAAACAGTACAGAGCCTGGAACAACTAGCAA  150

seq1  AGTTATTTTTCCCTGATTCTTTTGTCTGCCCGGGCCCTTTGTGATTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTTCCCTGATTCTTTTGTCTGCCCGGGCCCTTTGTGATTTGGA  200

seq1  TTACAAAGCACTATCTGTGTATTTTCTGATGGCGGGTGACAGCTACTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGCACTATCTGTGTATTTTCTGATGGCGGGTGACAGCTACTGTT  250

seq1  TATTCCCAGAAACTCAAATTAATGGTTTTGTTAAATCGACTTTCAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCAGAAACTCAAATTAATGGTTTTGTTAAATCGACTTTCAGCAGT  300

seq1  GCACACATAAGTCATCCCCTGGGGAATCTGTCGAAAGGTCCAAGCCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACATAAGTCATCCCCTGGGGAATCTGTCGAAAGGTCCAAGCCAGCT  350

seq1  TCTGTGTGCTTCAAAAGGAGTGTTCTTAAGCAAACAGCGAGAAAATTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCTTCAAAAGGAGTGTTCTTAAGCAAACAGCGAGAAAATTGGT  400

seq1  TACCTGAATCCTGAAAGTCAATTGAAGTGCCGCCTGCAAGGACATGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAATCCTGAAAGTCAATTGAAGTGCCGCCTGCAAGGACATGGGAG  450

seq1  GGTCAGAAGGAATAAGTATAAAGTAGGGAGCGACTTCATTGGCTCTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAGGAATAAGTATAAAGTAGGGAGCGACTTCATTGGCTCTTCCC  500

seq1  TAGCGTAACAGTCATGTCAGTAAAAGGGAGGGCAGCTAAGTTCATAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTAACAGTCATGTCAGTAAAAGGGAGGGCAGCTAAGTTCATAGGGA  550

seq1  GGACTCAGAAGGCCTTGGTTTCCTGCTTGGCTCTTCGGTCTCTCTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGAAGGCCTTGGTTTCCTGCTTGGCTCTTCGGTCTCTCTCAGGC  600

seq1  TGTCTTGTCCCATCTCTAAGACACAACCCCACAGAGGACCATGAAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTCCCATCTCTAAGACACAACCCCACAGAGGACCATGAAATGCA  650

seq1  ATAATAATGGCTGAGGTGTAGCTCAGTGGTGGGGCACTGGCCTAGAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATGGCTGAGGTGTAGCTCAGTGGTGGGGCACTGGCCTAGAATAC  700

seq1  AGGAAGCTGTCAGTCCGAGTTCTAGCACCACGGGCACAGTTACAAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGTCAGTCCGAGTTCTAGCACCACGGGCACAGTTACAAATTAG  750

seq1  AAAATACTTTATAGATGAAAAACACCATAAAAATTATGGGAGGTTGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTATAGATGAAAAACACCATAAAAATTATGGGAGGTTGGGTT  800

seq1  GCCTTTTAGATCCTTAGTTGAATTTTCAGAATTTCAGGTTTATGATCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAGATCCTTAGTTGAATTTTCAGAATTTCAGGTTTATGATCTGT  850

seq1  ATTCAGAAAAGCAAGAGAT-GGAGTCACTTCTGATGTATCAGGGTGGGAC  899
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  ATTCAGAAAAGCAAGAGATGGGAGTCACTTCTGATGTATCA-GGTGGGAC  899

seq1  AACATCTTGTGAACCAAGTGTCAGTGATACATTAAGTGAAAAATGAGAGA  949
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -ACATCTTGTGAACCAAGTGTCAGTGATACATTAAGTG-AAAATGAGAGA  947

seq1  GACCATGTCCTTAGAAGTATGAAAAGGAGAGGACAGATGCCCAGTATGCC  999
      |||||||||||||| ||||||||||||||||||| ||||||||||||| |
seq2  GACCATGTCCTTAG-AGTATGAAAAGGAGAGGAC-GATGCCCAGTATG-C  994

seq1  ATTCCTTATGAGCACTCTGTCTCCCTTCTTAGGCAAGGGTCCATCTCCAA  1049
      |||||||||||||||||||||| |||||||| |||  ||| ||||| | |
seq2  ATTCCTTATGAGCACTCTGTCT-CCTTCTTA-GCA--GGT-CATCTTC-A  1038

seq1  CAAGCTGAAGGAAGAGCTAAGCTAAGGAGAGAACAGCCATGTCTCATCAT  1099
      || |||||    |||||| |||||  |||||||||| |||||||||||||
seq2  CAGGCTGA---GAGAGCT-AGCTA--GAGAGAACAG-CATGTCTCATCAT  1081

seq1  GTGCCTCA  1107
      ||||||||
seq2  GTGCCTCA  1089

seq1: chr8_92759440_92760488
seq2: B6Ng01-138I20.g_68_1103 (reverse)

seq1  CCCACCCAAATCCATCACACACTGAAACCACAAAAACAAAACAAAAACAA  50
      ||||||||||| | |  | | |||||||| |  ||||||| ||||    |
seq2  CCCACCCAAATTCCT-TCCCCCTGAAACCCC--AAACAAACCAAA---CA  44

seq1  ACAAATAAACAAACACACAAAAAACATACTTTGGTCATAAAAAAAAAATC  100
      |||||||| ||| | |    ||||||| |||||||||||||||||||  |
seq2  ACAAATAACCAACCCC----AAAACAT-CTTTGGTCATAAAAAAAAA--C  87

seq1  CGAAATCAAAGGCTAAGAGGTTAAGAGCATTGGTTGCTCTTCCAGAGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCAAAGGCTAAGAGGTTAAGAGCATTGGTTGCTCTTCCAGAGGTC  137

seq1  CTCAGTTGAATTTCTAGCAACCATATTGTGGCTCACAACCATCTATAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGAATTTCTAGCAACCATATTGTGGCTCACAACCATCTATAATG  187

seq1  AGATCTGGTGTCCTCTTCTGGCCTGCAGGCATAAATACAAGCAGAACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGGTGTCCTCTTCTGGCCTGCAGGCATAAATACAAGCAGAACACT  237

seq1  GTATACATAATAAATAGATCTTTTTTTTAAAAAGTCAGAAATCAAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATAATAAATAGATCTTTTTTTTAAAAAGTCAGAAATCAAAGCAA  287

seq1  AGACTGTGTAACTAACTGTTCCACTCGTTGTGTTGAGTGACAGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGTAACTAACTGTTCCACTCGTTGTGTTGAGTGACAGGAAAAAA  337

seq1  AGATTTTAATGTGGTTTTTCTCATGCTGTAGGGATTTTCTGGGCAATATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATGTGGTTTTTCTCATGCTGTAGGGATTTTCTGGGCAATATC  387

seq1  ATAATGTCACTCAAAGACCTGCAACACCCGAGCATATTTTGGAATGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTCACTCAAAGACCTGCAACACCCGAGCATATTTTGGAATGCCCT  437

seq1  TCTTTACATGGTCAGTGGTTCTGGGTGTGTACGGTCAGCCATTCTCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACATGGTCAGTGGTTCTGGGTGTGTACGGTCAGCCATTCTCTCTG  487

seq1  CATTCAGTTCCTTTTGTAGTCTTTATCAGGCTGGCTTTTAAATTGCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTTCCTTTTGTAGTCTTTATCAGGCTGGCTTTTAAATTGCTTTT  537

seq1  ATCTGTCACTTGTTGATTTGGCTTTGGTTATATACACCCAGCATCCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCACTTGTTGATTTGGCTTTGGTTATATACACCCAGCATCCAAAA  587

seq1  TTATCTGTTTCAAGCCCAGGTCACAGGTCAGACCCTAGCATTCCAAAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTTCAAGCCCAGGTCACAGGTCAGACCCTAGCATTCCAAAGCT  637

seq1  CACCATTTCCCAATGGTACCATTTCTCACTGGAGTACAATCTTATGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTTCCCAATGGTACCATTTCTCACTGGAGTACAATCTTATGTCCT  687

seq1  AACAGTGAGCTATCAGAGTCTGTTCCGAAGGTTCTCACATGATCAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGAGCTATCAGAGTCTGTTCCGAAGGTTCTCACATGATCAGGACT  737

seq1  TATAGGAGCTCATAACAAGCCATGCCTAAGACACACTCAAAACCAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAGCTCATAACAAGCCATGCCTAAGACACACTCAAAACCAATTAT  787

seq1  ATCTGTCTTTGGTGCTGTTACATCTTGTTAAGGTTCCTGGTCATTTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTTGGTGCTGTTACATCTTGTTAAGGTTCCTGGTCATTTGTTG  837

seq1  CTATGGCACATCATGGACAATTTTGAACATATACAAACAGGGAAAACACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCACATCATGGACAATTTTGAACATATACAAACAGGGAAAACACG  887

seq1  ACCCTACATCTCTCAGTCACAGCCCACCCTCCTCTCCTCAAGGCCATCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACATCTCTCAGTCACAGCCCACCCTCCTCTCCTCAAGGCCATCCT  937

seq1  CACCATGTTGTATCATTAGAGATCACGTTCCATATACAACCCCATTCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTTGTATCATTAGAGATCACGTTCCATATACAACCCCATTCCAT  987

seq1  CCATAAAGGTCTTAGGATGGAAAGTATAAATTAAATAAAAAATGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGGTCTTAGGATGGAAAGTATAAATTAAATAAAAAATGAATTC  1036