BAC Information

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BAC

Clone NameB6Ng01-138J21
Chromosome8 (Build37)
Map Location 30,861,860 - 30,862,905
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138J21.bB6Ng01-138J21.g
ACCDH937825DH937826
length1,2191,032
definitionDH937825|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J21, 5' end.DH937826|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagaaaacca
gtagccaagatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaagttggaaaggaggaagtcaaaacatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagctttggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggtg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatcacagaacatggaaagatctgccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaattcccatcaaaattccaaatcaattcttc
aacgaattagaaagagcaatctgcaaattaatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagacgtctggtggaatcac
cttgcctgacctaaagttttactacagagcaattgtgaaaaaaaaaaact
gcatggtactggtatagcgacagacaagtagaccaatggaatagaattga
agacccagaaatgaacccacacacctatggtcacttgatcttcgacaagg
agctaaaaccatccagtggaagaaagacagcattttcaacagatggtgct
ggcacaaatggcggttatcatgtagaagaatatgaattgatccataccta
cctcttgtactaggtcaaatctaggtggatcaggacttcacataaacaga
gacactgaaacttatagagagaaagtgggaagctgagaatggcacaggga
aactctgaatgaaagccatgcttggtctgtagatctgaatgacatgaacc
atgaatccaagctctgcaaggcaaaactgtctatagacaagtcccacaga
atggaagagatcttttcgt
gaattcctctctagtggaatattccattcatacatgagaatgccttgaaa
actgggcaggcaggaaggatagttgcagagattataatagtctcctttat
atcccagcgagttaagaagagaaatggcaggtagtgttaagtgatctgca
tttgtaccatacatttacagagggtggcatcttctgtattgtttgacctt
cactaggaaatgtcattggatgctgagagatggcatggggattatggatt
attggtatagacaacaacaacaaaacaacaacacaacaataagcacaaga
acaagccacgagtaaaagtcaactaagcaagtctctgggatgactgaagt
ttgggtggagattttgtttatagtgctctgtgttgctcctcttggtgcat
gtgtttcttccttgccacatcactgcatcaaacaagaccttccctgcatc
acaaccaccaatctacagtttaatgggctagaaaaatggaggctaagcag
aatacatcctccttccccattgtaacttcccgaagctgaatcagtgatat
ggtcacctctacttaatacttattacaaatggtcatatggaaagacaaaa
ttcacattttttttttgtttcaaagtaacaagaatagatagatcatggta
gaggtcttaggggaactgtgggaaaacatgttggacaacaattggtgctt
gtggttagaggaacaaagcaaaatgggtggaaacagggtgtttacattgg
acttcaggagacagaaaaattataaagtaaccaaggtgtgggtgatgatg
tctttggccacgtggcaagaagtaaggtgaatttgataaatggatgcttc
tgctgtttctcaggaagttgggcagggaatagggagggaacaggctcata
ctgaagctttgatgatcagtggttatcagaaacatgaaatgatacagcca
gaacagagagctgacggagtgaatgtcagagctcttcatggattgaaaat
ttttaatgttattggtgggtaatgaaagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_30861860_30862905
seq2: B6Ng01-138J21.g_68_1099

seq1  GAATTCCTCTCTAGTGGAATATTCCATTCATACATGAGAATGCCTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCTAGTGGAATATTCCATTCATACATGAGAATGCCTTGAAA  50

seq1  ACTGGGCAGGCAGGAAGGATAGTTGCAGAGATTATAATAGTCTCCTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCAGGCAGGAAGGATAGTTGCAGAGATTATAATAGTCTCCTTTAT  100

seq1  ATCCCAGCGAGTTAAGAAGAGAAATGGCAGGTAGTGTTAAGTGATCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCGAGTTAAGAAGAGAAATGGCAGGTAGTGTTAAGTGATCTGCA  150

seq1  TTTGTACCATACATTTACAGAGGGTGGCATCTTCTGTATTGTTTGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACCATACATTTACAGAGGGTGGCATCTTCTGTATTGTTTGACCTT  200

seq1  CACTAGGAAATGTCATTGGATGCTGAGAGATGGCATGGGGATTATGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGAAATGTCATTGGATGCTGAGAGATGGCATGGGGATTATGGATT  250

seq1  ATTGGTATAGACAACAACAACAAAACAACAACACAACAATAAGCACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTATAGACAACAACAACAAAACAACAACACAACAATAAGCACAAGA  300

seq1  ACAAGCCACGAGTAAAAGTCAACTAAGCAAGTCTCTGGGATGACTGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCACGAGTAAAAGTCAACTAAGCAAGTCTCTGGGATGACTGAAGT  350

seq1  TTGGGTGGAGATTTTGTTTATAGTGCTCTGTGTTGCTCCTCTTGGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGAGATTTTGTTTATAGTGCTCTGTGTTGCTCCTCTTGGTGCAT  400

seq1  GTGTTTCTTCCTTGCCACATCACTGCATCAAACAAGACCTTCCCTGCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTCCTTGCCACATCACTGCATCAAACAAGACCTTCCCTGCATC  450

seq1  ACAACCACCAATCTACAGTTTAATGGGCTAGAAAAATGGAGGCTAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACCAATCTACAGTTTAATGGGCTAGAAAAATGGAGGCTAAGCAG  500

seq1  AATACATCCTCCTTCCCCATTGTAACTTCCCGAAGCTGAATCAGTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCCTCCTTCCCCATTGTAACTTCCCGAAGCTGAATCAGTGATAT  550

seq1  GGTCACCTCTACTTAATACTTATTACAAATGGTCATATGGAAAGACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTCTACTTAATACTTATTACAAATGGTCATATGGAAAGACAAAA  600

seq1  TTCACATTTTTTTTTTGTTTCAAAGTAACAAGAATAGATAGATCATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTTTTTTTTTGTTTCAAAGTAACAAGAATAGATAGATCATGGTA  650

seq1  GAGGTCTTAGGGGAACTGTGGGAAAACATGTTGGACAACAATTGGTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTAGGGGAACTGTGGGAAAACATGTTGGACAACAATTGGTGCTT  700

seq1  GTGGTTAGAGGAACAAAGCAAAATGGGTGGAAACAGGGTGTTTACATTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGAGGAACAAAGCAAAATGGGTGGAAACAGGGTGTTTACATTGG  750

seq1  ACTTCAGGAGACAGAAAAATTATAAAGTAACCAAGGTGTGGGTGATGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGGAGACAGAAAAATTATAAAGTAACCAAGGTGTGGGTGATGATG  800

seq1  TCTTTGGCCACGTGGCAAGAAGTAAGGTGAATTTGATAAATGGATGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCCACGTGGCAAGAAGTAAGGTGAATTTGATAAATGGATGCTTC  850

seq1  TGCTGTTTCTCAGGAAAGTTGGGCAGGGAATAGGGAGGGAACAGGCCTCA  900
      |||||||||||||| |||||||||||||||||||||||||||||| ||| 
seq2  TGCTGTTTCTCAGG-AAGTTGGGCAGGGAATAGGGAGGGAACAGG-CTC-  897

seq1  ATACTGAAGCTTTTGATGAATCAGGTGTTATCAGAAACATGAAAATGATA  950
      |||||||||| ||||||| |||||  ||||||||||||||| ||||||| 
seq2  ATACTGAAGC-TTTGATG-ATCAGTGGTTATCAGAAACATG-AAATGAT-  943

seq1  ACAGCCAAGAACAGAAGAGGCTGAACGGAGTGAATGTCAAGAGCCTCTCA  1000
      |||||| ||||||| ||| |||| |||||||||||||| |||||   |||
seq2  ACAGCC-AGAACAG-AGA-GCTG-ACGGAGTGAATGTC-AGAGCTCTTCA  988

seq1  TGGA-TGAAAATTTTTTTAATGTTATTGGTGGGTTAATGAAAGTGGG  1046
      |||| ||||||  |||||||||||||||||||| |||||||||||||
seq2  TGGATTGAAAA--TTTTTAATGTTATTGGTGGG-TAATGAAAGTGGG  1032