BAC Information

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BAC

Clone NameB6Ng01-139B13
Chromosome8 (Build37)
Map Location 77,972,721 - 78,103,944
singlet/doubletdoublet
Overlap gene1700007B14Rik
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229
Downstream geneLOC666036, LOC100039185, EG631594, LOC666226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139B13.bB6Ng01-139B13.g
ACCDH938170DH938171
length1,026872
definitionDH938170|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B13, 5' end.DH938171|Mus musculus domesticus DNA, BAC clone: B6Ng01-139B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,103,286 - 78,103,944)(77,972,721 - 77,973,596)
sequence
gaattcttttctaaactcaatgatatctgatcagttttctagtttataaa
ccttagcatcctcatgtctccacacaccctgttaaggttttgaagactgt
tcactcagcatagagtccactaactctgaatttacagacatatatttaaa
gaatcaatagcggcaagatcattgacaggaacagcattgagaaaggatgc
aaggagtagtagtggtttcaatgaaagtgatgcgccccccaaccccctgt
ctcatatagtttggtttccagttgatgtatctgtttgggaaggattagga
ggtatgggcttggtggaataagcatgtcactgggaatgggctttgagatt
tcaaaatctcagcaccatttccaatgctgtctctgtctcacttatgctta
tagctcaagctgtaagccctcagctactgctccaatgatatgcctttctg
aatgctgccatgctccccaatatgatggtcatagactcaatgcttctgga
accatatgctccaagttaagttggcttggttatagagctttgccacagca
attgaaaagtaactaaaacaggggtattctttggtcagctgaattgagaa
taaaacaatcaattattgcagtgctttatctgaaattttaatacattaat
gatcaatagatatccaaggagggaatataatctatagggttaatttggcg
ttttcttgttgtttgcggtggtttgaaagaaaatggcccccatagacaca
tagcaagtgacaatagctttgttggaggaggtttgtcagtaaggtatggg
ctttgggctctcagaagtttacaccaggtctctttctactgcctgtggat
ccaaatgtaaaactcacagctacctctcagccaccatgtctgcatgcatg
ctgccatgcttcccaccatgaatgtaattacctctgtcgtgtagccagtc
ccattaaatgttttctttaagagtatagtcatgcgtctctctcagcatgc
acactagacatgtgtattgtttatct
gaattcacagtgttgtgaggagtgagaggagagggcactaatggggcctg
gtagggcaactgtgattgggagagtgccctgggggcggagctaaggagac
aacaagggtggggctagtgtgactccacaactactaaagaggcttgaagg
ttctctagccacagaaggtgaccctgagcctgaaggtaaggtgaacgtgg
tcctggggactttaggattctcttgggtgagggtagagagaaatttgaaa
aaaaaaatgcgtatttacattaccccgataatagtattttacacagtaga
atgtactataaaagtttgaactgcatttcaacgtgatagaaaatagaata
atgtctggctctttcaggtttttcattctgtgcactcttgtatgtgctaa
gtaggcagttggcctcacgttgatctaggcacacgtgctaccacagcgca
catttttgggtgggcttaaagctgaaacaggatcttctgtgctgccaccc
ccggaagtctcacacgtttacactcagcaccacagcacctttgctgattc
tcaacatgcgtttccagtctttctgtatggcctggttttacctaagtctg
cagtgaggaagcattgaaaataacgaagacaactctgaaataaaaccctg
ccgtaaagcagtcaaatgggggatgagactacttcgtagaatttttaaaa
aatggggggaccaatattagtgatgtctagtgatcagaaacaggtattaa
atagcttaatcctaaagtgatcctatgctaattatgacagtttgaatgct
ttagtttctctttaggaagttgaatgtgggtttctctctctctctctctc
tctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78103286_78103944
seq2: B6Ng01-139B13.b_47_705 (reverse)

seq1  CTATTGATCATTAATGTATTAAAATTTCAGATAAAGCACTGCAATAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGATCATTAATGTATTAAAATTTCAGATAAAGCACTGCAATAATTG  50

seq1  ATTGTTTTATTCTCAATTCAGCTGACCAAAGAATACCCCTGTTTTAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTATTCTCAATTCAGCTGACCAAAGAATACCCCTGTTTTAGTTA  100

seq1  CTTTTCAATTGCTGTGGCAAAGCTCTATAACCAAGCCAACTTAACTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAATTGCTGTGGCAAAGCTCTATAACCAAGCCAACTTAACTTGGA  150

seq1  GCATATGGTTCCAGAAGCATTGAGTCTATGACCATCATATTGGGGAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGGTTCCAGAAGCATTGAGTCTATGACCATCATATTGGGGAGCAT  200

seq1  GGCAGCATTCAGAAAGGCATATCATTGGAGCAGTAGCTGAGGGCTTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATTCAGAAAGGCATATCATTGGAGCAGTAGCTGAGGGCTTACAG  250

seq1  CTTGAGCTATAAGCATAAGTGAGACAGAGACAGCATTGGAAATGGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTATAAGCATAAGTGAGACAGAGACAGCATTGGAAATGGTGCTG  300

seq1  AGATTTTGAAATCTCAAAGCCCATTCCCAGTGACATGCTTATTCCACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGAAATCTCAAAGCCCATTCCCAGTGACATGCTTATTCCACCAA  350

seq1  GCCCATACCTCCTAATCCTTCCCAAACAGATACATCAACTGGAAACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATACCTCCTAATCCTTCCCAAACAGATACATCAACTGGAAACCAAA  400

seq1  CTATATGAGACAGGGGGTTGGGGGGCGCATCACTTTCATTGAAACCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGAGACAGGGGGTTGGGGGGCGCATCACTTTCATTGAAACCACTA  450

seq1  CTACTCCTTGCATCCTTTCTCAATGCTGTTCCTGTCAATGATCTTGCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCCTTGCATCCTTTCTCAATGCTGTTCCTGTCAATGATCTTGCCGC  500

seq1  TATTGATTCTTTAAATATATGTCTGTAAATTCAGAGTTAGTGGACTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTCTTTAAATATATGTCTGTAAATTCAGAGTTAGTGGACTCTAT  550

seq1  GCTGAGTGAACAGTCTTCAAAACCTTAACAGGGTGTGTGGAGACATGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTGAACAGTCTTCAAAACCTTAACAGGGTGTGTGGAGACATGAGG  600

seq1  ATGCTAAGGTTTATAAACTAGAAAACTGATCAGATATCATTGAGTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGGTTTATAAACTAGAAAACTGATCAGATATCATTGAGTTTAGA  650

seq1  AAAGAATTC  659
      |||||||||
seq2  AAAGAATTC  659

seq1: chr8_77972721_77973596
seq2: B6Ng01-139B13.g_69_940

seq1  GAATTCACAGTGTTGTGAGGAGTGAGAGGAGAGGGCACTAATGGGGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTGTTGTGAGGAGTGAGAGGAGAGGGCACTAATGGGGCCTG  50

seq1  GTAGGGCAACTGTGATTGGGAGAGTGCCCTGGGGGCGGAGCTAAGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCAACTGTGATTGGGAGAGTGCCCTGGGGGCGGAGCTAAGGAGAC  100

seq1  AACAAGGGTGGGGCTAGTGTGACTCCACAACTACTAAAGAGGCTTGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGGTGGGGCTAGTGTGACTCCACAACTACTAAAGAGGCTTGAAGG  150

seq1  TTCTCTAGCCACAGAAGGTGACCCTGAGCCTGAAGGTAAGGTGAACGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTAGCCACAGAAGGTGACCCTGAGCCTGAAGGTAAGGTGAACGTGG  200

seq1  TCCTGGGGACTTTAGGATTCTCTTGGGTGAGGGTAGAGAGAAATTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGACTTTAGGATTCTCTTGGGTGAGGGTAGAGAGAAATTTGAAA  250

seq1  AAAAAAATGCGTATTTACATTACCCCGATAATAGTATTTTACACAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGCGTATTTACATTACCCCGATAATAGTATTTTACACAGTAGA  300

seq1  ATGTACTATAAAAGTTTGAACTGCATTTCAACGTGATAGAAAATAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTATAAAAGTTTGAACTGCATTTCAACGTGATAGAAAATAGAATA  350

seq1  ATGTCTGGCTCTTTCAGGTTTTTCATTCTGTGCACTCTTGTATGTGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGCTCTTTCAGGTTTTTCATTCTGTGCACTCTTGTATGTGCTAA  400

seq1  GTAGGCAGTTGGCCTCACGTTGATCTAGGCACACGTGCTACCACAGCGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGTTGGCCTCACGTTGATCTAGGCACACGTGCTACCACAGCGCA  450

seq1  CATTTTTGGGTGGGCTTAAAGCTGAAACAGGATCTTCTGTGCTGCCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGGGTGGGCTTAAAGCTGAAACAGGATCTTCTGTGCTGCCACCC  500

seq1  CCGGAAGTCTCACACGTTTACACTCAGCACCACAGCACCTTTGCTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGTCTCACACGTTTACACTCAGCACCACAGCACCTTTGCTGATTC  550

seq1  TCAACATGCGTTTCCAGTCTTTCTGTATGGCCTGGTTTTACCTAAGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGCGTTTCCAGTCTTTCTGTATGGCCTGGTTTTACCTAAGTCTG  600

seq1  CAGTGAGGAAGCATTGAAAATAACGAAGACAACTCTGAAATAAAACCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGAAGCATTGAAAATAACGAAGACAACTCTGAAATAAAACCCTG  650

seq1  CCGTAAAGCAGTCAAATGGGGGATGAGACTACTTCGTAGAATTTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAAGCAGTCAAATGGGGGATGAGACTACTTCGTAGAATTTTTAAAA  700

seq1  AATGGGGGGACCAATATTAGTGATGTCTAGTGATCAGAAACAGGTATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGACCAATATTAGTGATGTCTAGTGATCAGAAACAGGTATTAA  750

seq1  ATAGCTTAATCCTAAAGTGATCCTATGCTAATTATGACAGTTTGAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTAATCCTAAAGTGATCCTATGCTAATTATGACAGTTTGAATGCT  800

seq1  TTAGTTTCTCTTTAGGAAGTTGAATGTGGGTTTTCTTCTCTCTCTCTCTC  850
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  TTAGTTTCTCTTTAGGAAGTTGAATGTGGGT----TTCTCTCTCTCTCTC  846

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTC  876
      ||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTC  872