BAC Information

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BAC

Clone NameB6Ng01-139C10
Chromosome8 (Build37)
Map Location 68,492,619 - 68,613,761
singlet/doubletdoublet
Overlap geneMarch1
Upstream gene3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, LOC100040986
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440, LOC665453
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139C10.bB6Ng01-139C10.g
ACCDH938212DH938213
length1,1621,118
definitionDH938212|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C10, 5' end.DH938213|Mus musculus domesticus DNA, BAC clone: B6Ng01-139C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,612,584 - 68,613,761)(68,492,619 - 68,493,776)
sequence
gaattctttaatgaaaagtctatattttttagtttttttttattaaggca
tttttattagatattttcttcatttacatttcaaatgccatcctcacagt
cccctatccccacccttgctccccaacacacccactagactagttggcga
tttgagcattttgggtttccattatttaagtcactccatcaagtcttcat
tcatttgattgattcccgaaattttagttatggctataatgcttagtata
tatatgtatgtatgtgtgtatgcatgtatgtatgtatctgatctgtttga
actgaaagagtcatcctctctcatgtttgttacaatcgcatcagatggcc
tgctagggctccaatatgttgataaaaaacaaattcctaggaagtgcttt
gtcagtaagtgatgctatagttgctactgtgaagtcaaaactgtcataag
cacctcaaatacaaggcaatgtatataaaaaaccataaagaaatatataa
ttctaataagtaggattacatttagagttactaatttgtgtgttatattt
actataaaaaaacaaagatcacaaaagaaaaaatatttaaaaatatagta
tgtcacaatcaggaaaggtccaagggcttacatgattatgattctgcagc
tactaagaacttcaagagtattgtagacactaacagaatatatgagatat
ttagatgcaaatggcattagtatttcataaaaaaaaaaatagcagtaacc
aggggatttgcatttgatccttaaatctgcatccccaccaggcactgaaa
ggagggctaggtggtgttatcatgtctggttgccaaataaagtgacaaaa
gtgcagagtttagggaaccatatcttttatagagatggtaagactgtttg
aactttgtcatgggcaaaccattttcttatcatgaaacggtaagcatatt
gcctcatgtcctctatctctactcaatctttactaagaaacatttgtaag
aagttaagaatgctggctagaagagatggctagcagaaaagtctactgtt
tctgtagaggactcaagttcagtccccagctgcactcagaactactggta
gctcttagatctaggaaatctgaagcttcttctttctgctgagtgtaccc
tgcactcaagtg
gaattccaaaaatatgagaggtgaaaaacaagatttacaaatgtggcttg
ttgctgttgagaatggaagtcaatggatacacgtgagctgaactgaagaa
aactttgtgtaatgatgggcagcaactttgcttggaattcagaatgacct
gagaagtctgaggcgtgggcagcatgattgttatgggtttaaggacatct
ggcctatacagtgagttccaggcccacatggctatagtgtcaaaaacagt
actggttcagttcctagactccatcagaagtccactgttgatttcttctt
agtatgagttaggataactggcatgacttctatggccttaaaaaatcaaa
agtgttttcctttctatataataaatgtaagtgcatttattctacctcat
ggtcacaatctccatacacatctcttcacatctacatctcccatccgacc
aacctctatctgagatcacctgtctctccccagggaaaaatcatctttct
attgtgattgaatgtaatggctctacctgaatactggctgaataccaagc
caataaagacatccaggaatcaaagcagtggaaagagatttgtgatgtgc
agtccataaggaatcactattggaaataattttggaagtggtattctcta
acaaagataggatttttaatgaggaaaattatgtatcttcatacaaggta
gatctgtcaaatggagtcatgggcatatcccaagcatctcaatttgaggt
cataaccatgtatttaaaaatgatggacagcaatgcccctgaactgatta
tttattatcatagttcaaaaatgtaatactgagtcacctaaaaactcaag
taaagtagctgatttcttctagtgtcttttgacttcccagacagcctcag
taaagcatggaaagaaagttaaaacaccctaggaagttaaaccactgtcc
tgaatgtgtatagtatttaaaatagactcagtaagcatttgaaagaaatg
atgagaggagaaaatgaatttaaggagatagtctttaagtgtggtgaagc
ctttgatcaatgcatctattctcaataatatgaagtagaagtcgttaaag
catgttagtttcttaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_68612584_68613761
seq2: B6Ng01-139C10.b_47_1208 (reverse)

seq1  CACTTGAGTGCA-GGTACACTCAGCAGAAGAGAGGAGAGGCTGTCAGATG  49
      |||||||||||| ||||||||||||||||   || ||| ||| |||||| 
seq2  CACTTGAGTGCAGGGTACACTCAGCAGAA---AGAAGAAGCT-TCAGATT  46

seq1  TCCTAGATCT-AGAGCTACAAGTAGTGCTGAAGTGCAAGCTGGGGACTGA  98
      |||||||||| |||||||| |||||| ||| ||||| |||||||||||||
seq2  TCCTAGATCTAAGAGCTACCAGTAGTTCTG-AGTGC-AGCTGGGGACTGA  94

seq1  ACTTGAGTCCTCTACAGAAACAGTAGAACTTATCTGCTAAGCCATCTC-T  147
      |||||||||||||||||||||||||| |||| |||||| ||||||||| |
seq2  ACTTGAGTCCTCTACAGAAACAGTAG-ACTTTTCTGCT-AGCCATCTCTT  142

seq1  CTAGCCAGCATTCTTAACTTTCTTTACAAATGTATCTTAGTAAAAGATTG  197
      ||||||||||||||||||||   |||||||||| ||||||| ||||||||
seq2  CTAGCCAGCATTCTTAACTT--CTTACAAATGTTTCTTAGT-AAAGATTG  189

seq1  AAGTAGAGAATAGAGGACATGAGGCAATATGCTTTACCGTTTTCATGATA  247
       ||||||| ||||||||||||||||||||||| |||||| ||||||||| 
seq2  -AGTAGAG-ATAGAGGACATGAGGCAATATGC-TTACCG-TTTCATGAT-  234

seq1  AAGAAAATGGTTTGCCCATGACAAAGTTCAAACAGTCTTACCATCTCTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGAAAATGGTTTGCCCATGACAAAGTTCAAACAGTCTTACCATCTC-TA  283

seq1  TAAAAGATATGGTTTCCCTAAACTCTGCACTTTTGTCACTTTATTTTGGC  347
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  TAAAAGATATGG-TTCCCTAAACTCTGCACTTTTGTCACTTTA-TTTGGC  331

seq1  AACCAGACATGATAACACCACCTAGCCCTCCTTTCAGTGCCTGGTGGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACATGATAACACCACCTAGCCCTCCTTTCAGTGCCTGGTGGGGA  381

seq1  TGCAGATTTAAGGATCAAATGCAAATCCCCTGGTTACTGCTATTTTTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATTTAAGGATCAAATGCAAATCCCCTGGTTACTGCTATTTTTTTT  431

seq1  TTTATGAAATACTAATGCCATTTGCATCTAAATATCTCATATATTCTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAATACTAATGCCATTTGCATCTAAATATCTCATATATTCTGTT  481

seq1  AGTGTCTACAATACTCTTGAAGTTCTTAGTAGCTGCAGAATCATAATCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTACAATACTCTTGAAGTTCTTAGTAGCTGCAGAATCATAATCAT  531

seq1  GTAAGCCCTTGGACCTTTCCTGATTGTGACATACTATATTTTTAAATATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCTTGGACCTTTCCTGATTGTGACATACTATATTTTTAAATATT  581

seq1  TTTTCTTTTGTGATCTTTGTTTTTTTATAGTAAATATAACACACAAATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGTGATCTTTGTTTTTTTATAGTAAATATAACACACAAATTA  631

seq1  GTAACTCTAAATGTAATCCTACTTATTAGAATTATATATTTCTTTATGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTAAATGTAATCCTACTTATTAGAATTATATATTTCTTTATGGT  681

seq1  TTTTTATATACATTGCCTTGTATTTGAGGTGCTTATGACAGTTTTGACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATACATTGCCTTGTATTTGAGGTGCTTATGACAGTTTTGACTT  731

seq1  CACAGTAGCAACTATAGCATCACTTACTGACAAAGCACTTCCTAGGAATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGCAACTATAGCATCACTTACTGACAAAGCACTTCCTAGGAATT  781

seq1  TGTTTTTTATCAACATATTGGAGCCCTAGCAGGCCATCTGATGCGATTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTATCAACATATTGGAGCCCTAGCAGGCCATCTGATGCGATTGT  831

seq1  AACAAACATGAGAGAGGATGACTCTTTCAGTTCAAACAGATCAGATACAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATGAGAGAGGATGACTCTTTCAGTTCAAACAGATCAGATACAT  881

seq1  ACATACATGCATACACACATACATACATATATATACTAAGCATTATAGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGCATACACACATACATACATATATATACTAAGCATTATAGCC  931

seq1  ATAACTAAAATTTCGGGAATCAATCAAATGAATGAAGACTTGATGGAGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAAATTTCGGGAATCAATCAAATGAATGAAGACTTGATGGAGTG  981

seq1  ACTTAAATAATGGAAACCCAAAATGCTCAAATCGCCAACTAGTCTAGTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATAATGGAAACCCAAAATGCTCAAATCGCCAACTAGTCTAGTGG  1031

seq1  GTGTGTTGGGGAGCAAGGGTGGGGATAGGGGACTGTGAGGATGGCATTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGGGGAGCAAGGGTGGGGATAGGGGACTGTGAGGATGGCATTTG  1081

seq1  AAATGTAAATGAAGAAAATATCTAATAAAAATGCCTTAATAAAAAAAAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATGAAGAAAATATCTAATAAAAATGCCTTAATAAAAAAAAAC  1131

seq1  TAAAAAATATAGACTTTTCATTAAAGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  TAAAAAATATAGACTTTTCATTAAAGAATTC  1162

seq1: chr8_68492619_68493776
seq2: B6Ng01-139C10.g_66_1183

seq1  GAATTCCAAAAATATGAGAGGTGAAAAACAAGATTTACAAATGTGGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAATATGAGAGGTGAAAAACAAGATTTACAAATGTGGCTTG  50

seq1  TTGCTGTTGAGAATGGAAGTCAATGGATACACGTGAGCTGAACTGAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGAGAATGGAAGTCAATGGATACACGTGAGCTGAACTGAAGAA  100

seq1  AACTTTGTGTAATGATGGGCAGCAACTTTGCTTGGAATTCAGAATGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTGTAATGATGGGCAGCAACTTTGCTTGGAATTCAGAATGACCT  150

seq1  GAGAAGTCTGAGGCGTGGGCAGCATGATTGTTATGGGTTTAAGGACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTCTGAGGCGTGGGCAGCATGATTGTTATGGGTTTAAGGACATCT  200

seq1  GGCCTATACAGTGAGTTCCAGGCCCACATGGCTATAGTGTCAAAAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATACAGTGAGTTCCAGGCCCACATGGCTATAGTGTCAAAAACAGT  250

seq1  ACTGGTTCAGTTCCTAGACTCCATCAGAAGTCCACTGTTGATTTCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCAGTTCCTAGACTCCATCAGAAGTCCACTGTTGATTTCTTCTT  300

seq1  AGTATGAGTTAGGATAACTGGCATGACTTCTATGGCCTTAAAAAATCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGTTAGGATAACTGGCATGACTTCTATGGCCTTAAAAAATCAAA  350

seq1  AGTGTTTTCCTTTCTATATAATAAATGTAAGTGCATTTATTCTACCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTCCTTTCTATATAATAAATGTAAGTGCATTTATTCTACCTCAT  400

seq1  GGTCACAATCTCCATACACATCTCTTCACATCTACATCTCCCATCCGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAATCTCCATACACATCTCTTCACATCTACATCTCCCATCCGACC  450

seq1  AACCTCTATCTGAGATCACCTGTCTCTCCCCAGGGAAAAATCATCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTATCTGAGATCACCTGTCTCTCCCCAGGGAAAAATCATCTTTCT  500

seq1  ATTGTGATTGAATGTAATGGCTCTACCTGAATACTGGCTGAATACCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATTGAATGTAATGGCTCTACCTGAATACTGGCTGAATACCAAGC  550

seq1  CAATAAAGACATCCAGGAATCAAAGCAGTGGAAAGAGATTTGTGATGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGACATCCAGGAATCAAAGCAGTGGAAAGAGATTTGTGATGTGC  600

seq1  AGTCCATAAGGAATCACTATTGGAAATAATTTTGGAAGTGGTATTCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATAAGGAATCACTATTGGAAATAATTTTGGAAGTGGTATTCTCTA  650

seq1  ACAAAGATAGGATTTTTAATGAGGAAAATTATGTATCTTCATACAAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATAGGATTTTTAATGAGGAAAATTATGTATCTTCATACAAGGTA  700

seq1  GATCTGTCAAATGGAGTCATGGGCATATCCCAAGCATCTCAATTTGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTCAAATGGAGTCATGGGCATATCCCAAGCATCTCAATTTGAGGT  750

seq1  CATAACCATGTATTTAAAAATGATGGACAGCAATGCCCCTGAACTGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCATGTATTTAAAAATGATGGACAGCAATGCCCCTGAACTGATTA  800

seq1  TTTATTATCATAGTTCAAAAATGTAATACTGAGTCACCTAAAAACTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATCATAGTTCAAAAATGTAATACTGAGTCACCTAAAAACTCAAG  850

seq1  TAAAGTAGCTGATTTCTTCTAGTGTCTTTTGACTTTCCCCAGACAGCCTC  900
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TAAAGTAGCTGATTTCTTCTAGTGTCTTTTGACTT--CCCAGACAGCCTC  898

seq1  AGTTAAAGCATGGAAAGAAAGTTAAAACACCCTAGGAAGTTAAACCACCT  950
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AG-TAAAGCATGGAAAGAAAGTTAAAACACCCTAGGAAGTTAAACCA-CT  946

seq1  GTCCTGAATGTGTTAATAGTATTTAAAAATTAGACTCAGTAAGCATTTTG  1000
      |||||||||||||  |||||||||||||  ||||||||||||||| ||||
seq2  GTCCTGAATGTGT--ATAGTATTTAAAA--TAGACTCAGTAAGCA-TTTG  991

seq1  AAAGGAAAATGATGAGAGGAGAAAATGAAATTTTAAAGGGAGATAGTCTT  1050
      ||||  |||||||||||||||||||||||  |||||  ||||||||||||
seq2  AAAG--AAATGATGAGAGGAGAAAATGAA--TTTAA--GGAGATAGTCTT  1035

seq1  TAAGTGTTGGGTTGAGAGGCCCCTTTTGGATTTCAAATGCATCTTATTTC  1100
      |||||||  |||   || |||    || |||    |||||||||   |||
seq2  TAAGTGT--GGT---GAAGCC----TTTGAT---CAATGCATCT--ATTC  1071

seq1  TCAATATAATGAAGTTAGAAGTTTCTGTTTAAAAGCATGTTTAAGTTTTC  1150
      ||||||  |||||| |||||||    |||  ||||||||||  ||||   
seq2  TCAATAATATGAAG-TAGAAGT---CGTT--AAAGCATGTT--AGTT---  1110

seq1  TTTTAAGT  1158
      | ||||||
seq2  TCTTAAGT  1118