BAC Information

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BAC

Clone NameB6Ng01-139D15
Chromosome8 (Build37)
Map Location 109,055,198 - 109,258,720
singlet/doubletdoublet
Overlap geneCdh3, LOC100042734, Cdh1, Tmco7
Upstream geneAtp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik
Downstream geneHas3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139D15.bB6Ng01-139D15.g
ACCDH938266DH938267
length9661,093
definitionDH938266|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D15, 5' end.DH938267|Mus musculus domesticus DNA, BAC clone: B6Ng01-139D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,257,759 - 109,258,720)(109,055,198 - 109,056,302)
sequence
gaattctcctttgccccagccactgcatttgacatttaccaaaggaggta
gaaactcaggctcacagaagaacctgcagctggttgtttatagcagctct
agtcatgaatctcgaagctcagaggtgactaagatgacctccataaggtg
agtgcataaacagacttgtcaagacagtgtcatttagtactgtcggtgcg
ctagcaagccatgaaaagacatggaggaatattagtgaggagaaataata
caaagtgagaggaagcaatctgcaaggatacaggtgagagagagagagag
agagagagagagagagagagagagagagagagtgtaagtgagtgagtaca
gggggcagatgtgagagtgaacctatttttaggatacaggaggatggcag
acatgtggaacctattaacagtacaagccccagagtgaaccctgatgtaa
gctgcagactgggagccacactgatgtggttatgtggattcctcagttac
aacaaagagcccagaatgtagctcagggtacacctagcaggtgaaagggt
tgagtccccaggagatacacacaaacacacacacacacacacacacacac
acacacacacgaggtaaagaattctaaaaagccgttactctttggtaaca
atggggaggctagggacatgagggcataggagatatctgagaaacgtctg
tatctgctcaattttgttgtgaccctaaaactactctaaaaaaataaact
ctgtgcctgggagattaactaggcaagtgaaagcacttgccttgtaagtc
taattacaggtttaaatccagaacccactgcttggaatgtctgtgacccc
atcacttcctacagtgacacagaaggcagagacgggagcattattacaaa
gtcaaggaaggccctgctgaaaggaacttgacagggcaccttgcctgggg
gttatattgcacagca
gaattcctgaccgttgagacaaagtcccatggctggttggccaggacagg
aattgagtctcacaattctcaagggttagcgttagaaaccaaggaaggtt
tggtctcatgaggtgtttctcctcagctttgaggtggccagctcctccat
tgcggctacatagcctatatactgtgtctagagtatctctcctaaagaca
ttagcaacaatgggactagggccagtgagctcttttaagagctttccttc
aaatgtagtcactttggggtgtatgaggagcctgtgaagttcaatgtaga
gattggggtgaggcaagaatccaggataataaaggagtcaggtgtggtca
acacttgacgtcctagaatctccagaaacaaagaagaatcatgaagttaa
gcttggtcttcaagttgaataccaaacctgtctgagctacatagcaagac
cttgtctcaaagcagagggctggagagacggctcggtcattaaagcagtt
gccactaaaggataaggccaggggttctgatacttgacacacataaagct
agggaggggcctcaggtaaaagctagatggtggaagaagagaaccggtgt
ggtgtgctatgagatgcgcatgcccacagacacaccaagtgtaattatag
tgaaataacgaacagccaggtggccattgtggcccgcctgcaagtccagc
actcagcatacagagacacaggatctccggagcaggctgactctctgtga
gctctgggctcagtgcgagaccctgcttcagtatgtgaaaagcaactgaa
gaaaataccatgtgcaggcacatgggcacacacacacagagtcaaaaaga
acaccaaaactaaaaagattaaaaataaatagtatatagcatggccaagt
ggttaaaagagtaaaagtacttgcaagcatggaaaggttcgttttcttca
agtttttttttcctcgtccgtagttatgtggaacactatgtgtcacttta
aatctgccggctttgttcatagcacagggagcattcctgtatattttaaa
ctctacaagtgtactggcacagctggatagaaggctcagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_109257759_109258720
seq2: B6Ng01-139D15.b_46_1011 (reverse)

seq1  TGCTGTGCTATATAAACCCCAGGCAGGCTGCCCTGTCAGGTTCCTTTCAG  50
      |||||||| |||||| ||||||||| | |||||||||| |||||||||||
seq2  TGCTGTGCAATATAACCCCCAGGCAAGGTGCCCTGTCAAGTTCCTTTCAG  50

seq1  CTGGGCC-TCCTTGACTTTGTAATATTGCTCCCGTCTCTGCCTCCTGTGT  99
      | ||||| ||||||||||||||||| ||||||||||||||||| ||||||
seq2  CAGGGCCTTCCTTGACTTTGTAATAATGCTCCCGTCTCTGCCTTCTGTGT  100

seq1  CACTGTAGG-AGTGCT-GGGTCACAGACATTTCCAGCAGTGGGTTCTGGA  147
      ||||||||| |||| | |||||||||||||| | ||||||||||||||||
seq2  CACTGTAGGAAGTGATGGGGTCACAGACATTCCAAGCAGTGGGTTCTGGA  150

seq1  TCTAAACCTGTAATTAGACTTACAAGGCAAGTGCTTTCACTTGCCTAGTT  197
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCTGTAATTAGACTTACAAGGCAAGTGCTTTCACTTGCCTAGTT  200

seq1  -ATCTCCCAGGCACAGAGTTTATTTTTTTAGAGTAGTTTTAGGGTCACAA  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCCAGGCACAGAGTTTATTTTTTTAGAGTAGTTTTAGGGTCACAA  250

seq1  CAAAATTGAGCAGATACAGACGTTTCTCAGATATCTCCTATGCCCTCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGAGCAGATACAGACGTTTCTCAGATATCTCCTATGCCCTCATG  300

seq1  TCCCTAGCCTCCCCATTGTTACCAAAGAGTAACGGCTTTTTAGAATTCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGCCTCCCCATTGTTACCAAAGAGTAACGGCTTTTTAGAATTCTT  350

seq1  TACCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGT  400

seq1  ATCTCCTGGGGACTCAACCCTTTCACCTGCTAGGTGTACCCTGAGCTACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGGGGACTCAACCCTTTCACCTGCTAGGTGTACCCTGAGCTACA  450

seq1  TTCTGGGCTCTTTGTTGTAACTGAGGAATCCACATAACCACATCAGTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTCTTTGTTGTAACTGAGGAATCCACATAACCACATCAGTGTG  500

seq1  GCTCCCAGTCTGCAGCTTACATCAGGGTTCACTCTGGGGCTTGTACTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAGTCTGCAGCTTACATCAGGGTTCACTCTGGGGCTTGTACTGTT  550

seq1  AATAGGTTCCACATGTCTGCCATCCTCCTGTATCCTAAAAATAGGTTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTCCACATGTCTGCCATCCTCCTGTATCCTAAAAATAGGTTCAC  600

seq1  TCTCACATCTGCCCCCTGTACTCACTCACTTACACTCTCTCTCTCTCTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATCTGCCCCCTGTACTCACTCACTTACACTCTCTCTCTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTGTATCCTTGCAGATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCTGTATCCTTGCAGATT  700

seq1  GCTTCCTCTCACTTTGTATTATTTCTCCTCACTAATATTCCTCCATGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCTCACTTTGTATTATTTCTCCTCACTAATATTCCTCCATGTCT  750

seq1  TTTCATGGCTTGCTAGCGCACCGACAGTACTAAATGACACTGTCTTGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGCTTGCTAGCGCACCGACAGTACTAAATGACACTGTCTTGACA  800

seq1  AGTCTGTTTATGCACTCACCTTATGGAGGTCATCTTAGTCACCTCTGAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTTTATGCACTCACCTTATGGAGGTCATCTTAGTCACCTCTGAGC  850

seq1  TTCGAGATTCATGACTAGAGCTGCTATAAACAACCAGCTGCAGGTTCTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGATTCATGACTAGAGCTGCTATAAACAACCAGCTGCAGGTTCTTC  900

seq1  TGTGAGCCTGAGTTTCTACCTCCTTTGGTAAATGTCAAATGCAGTGGCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCTGAGTTTCTACCTCCTTTGGTAAATGTCAAATGCAGTGGCTG  950

seq1  GGGCAAAGGAGAATTC  962
      ||||||||||||||||
seq2  GGGCAAAGGAGAATTC  966

seq1: chr8_109055198_109056302
seq2: B6Ng01-139D15.g_69_1161

seq1  GAATTCCTGACCGTTGAGACAAAGTCCCATGGCTGGTTGGCCAGGACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACCGTTGAGACAAAGTCCCATGGCTGGTTGGCCAGGACAGG  50

seq1  AATTGAGTCTCACAATTCTCAAGGGTTAGCGTTAGAAACCAAGGAAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTCTCACAATTCTCAAGGGTTAGCGTTAGAAACCAAGGAAGGTT  100

seq1  TGGTCTCATGAGGTGTTTCTCCTCAGCTTTGAGGTGGCCAGCTCCTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCATGAGGTGTTTCTCCTCAGCTTTGAGGTGGCCAGCTCCTCCAT  150

seq1  TGCGGCTACATAGCCTATATACTGTGTCTAGAGTATCTCTCCTAAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCTACATAGCCTATATACTGTGTCTAGAGTATCTCTCCTAAAGACA  200

seq1  TTAGCAACAATGGGACTAGGGCCAGTGAGCTCTTTTAAGAGCTTTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAACAATGGGACTAGGGCCAGTGAGCTCTTTTAAGAGCTTTCCTTC  250

seq1  AAATGTAGTCACTTTGGGGTGTATGAGGAGCCTGTGAAGTTCAATGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGTCACTTTGGGGTGTATGAGGAGCCTGTGAAGTTCAATGTAGA  300

seq1  GATTGGGGTGAGGCAAGAATCCAGGATAATAAAGGAGTCAGGTGTGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGGTGAGGCAAGAATCCAGGATAATAAAGGAGTCAGGTGTGGTCA  350

seq1  ACACTTGACGTCCTAGAATCTCCAGAAACAAAGAAGAATCATGAAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGACGTCCTAGAATCTCCAGAAACAAAGAAGAATCATGAAGTTAA  400

seq1  GCTTGGTCTTCAAGTTGAATACCAAACCTGTCTGAGCTACATAGCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCTTCAAGTTGAATACCAAACCTGTCTGAGCTACATAGCAAGAC  450

seq1  CTTGTCTCAAAGCAGAGGGCTGGAGAGACGGCTCGGTCATTAAAGCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCAAAGCAGAGGGCTGGAGAGACGGCTCGGTCATTAAAGCAGTT  500

seq1  GCCACTAAAGGATAAGGCCAGGGGTTCTGATACTTGACACACATAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTAAAGGATAAGGCCAGGGGTTCTGATACTTGACACACATAAAGCT  550

seq1  AGGGAGGGGCCTCAGGTAAAAGCTAGATGGTGGAAGAAGAGAACCGGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGCCTCAGGTAAAAGCTAGATGGTGGAAGAAGAGAACCGGTGT  600

seq1  GGTGTGCTATGAGATGCGCATGCCCACAGACACACCAAGTGTAATTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTATGAGATGCGCATGCCCACAGACACACCAAGTGTAATTATAG  650

seq1  TGAAATAACGAACAGCCAGGTGGCCATTGTGGCCCGCCTGCAAGTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAACGAACAGCCAGGTGGCCATTGTGGCCCGCCTGCAAGTCCAGC  700

seq1  ACTCAGCATACAGAGACACAGGATCTCCGGAGCAGGCTGACTCTCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCATACAGAGACACAGGATCTCCGGAGCAGGCTGACTCTCTGTGA  750

seq1  GCTCTGGGCTCAGTGCGAGACCCTGCTTCAGTATGTGAAAAGCAACTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGCTCAGTGCGAGACCCTGCTTCAGTATGTGAAAAGCAACTGAA  800

seq1  GAAAATACCATGTGCAGGCACATGGGCACACACACACAGAGTCAAAAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACCATGTGCAGGCACATGGGCACACACACACAGAGTCAAAAAGA  850

seq1  ACACCAAAAACTAAAAAGATTAAAAATAAATAGTATATAGCCATGGCCAA  900
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  ACACC-AAAACTAAAAAGATTAAAAATAAATAGTATATAG-CATGGCCAA  898

seq1  GTGGTTAAAAGAGTTAAAAGTTACTTGCAAGCATGGAAAGGGTCGTTTTC  950
      ||||||||||||| |||||| |||||||||||||||||||| ||||||||
seq2  GTGGTTAAAAGAG-TAAAAG-TACTTGCAAGCATGGAAAGGTTCGTTTTC  946

seq1  TTCAAGGTTTTTTTTTTCCCCCGTCCGTAGTTATGT-GCACACTATGTGT  999
      ||||||   |||||||| || ||||||||||||||| | |||||||||||
seq2  TTCAAG---TTTTTTTTTCCTCGTCCGTAGTTATGTGGAACACTATGTGT  993

seq1  CACTTTAAATTCTGCCCGCTTTGTTTCATAGCACA-GGAGCATCCCTGTA  1048
      ||||||||| |||||| |||||| ||||||||||| ||||||| ||||||
seq2  CACTTTAAA-TCTGCCGGCTTTG-TTCATAGCACAGGGAGCATTCCTGTA  1041

seq1  TAATTTTAAAACTCTACCAAGTGTCACTTGGCACAGCTGGATAGATAGCT  1098
      ||  ||| |||||||| ||||||| || |||||||||||||||||  |||
seq2  TA--TTTTAAACTCTA-CAAGTGT-AC-TGGCACAGCTGGATAGAAGGCT  1086

seq1  CAGGGAG  1105
      |||||||
seq2  CAGGGAG  1093