BAC Information

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BAC

Clone NameB6Ng01-139K19
Chromosome8 (Build37)
Map Location 52,878,822 - 52,879,901
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139K19.bB6Ng01-139K19.g
ACCDH938600DH938601
length1,2151,075
definitionDH938600|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K19, 5' end.DH938601|Mus musculus domesticus DNA, BAC clone: B6Ng01-139K19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccacacctaaacatgataaaagcaatctacagcaaatca
gtagccaacttcaaaataaatggtgagaagctggaagcaatctcactaaa
atcagtgactagacaaggctgcccactttctccctacctattcaacatag
tacttgaagtcctagccagagcaattcgacaacgaaaggagatcaaggag
atacaaattggaaaagaagaagtcaaaatatcagatgatgtgatagtata
tataagtgaccctaaaaattccaccagagaactcctaaacctgataaata
gcttcagtgaagtagctggatataaaattaactcaaacaagtcaatgacc
tttctgtacacaaaggataagcaggctgagaaagaaattagggaattaac
acccttctcaagaatcacaaataatataaaatacattggcatgactctaa
ggaagtgaaagagaattgacaaataggacctcatgaaactgcacagcttt
tgtaaggcaagagataccatcaataagacaaaaaggccaccaacagattg
ggaaaagatcttcacctatcctaaatcagatagaggactaatatccaata
tatataaagaactcaagaaggcggactccagaaaatcaaataagcccatt
taaaaatggggatcaggagtaaacaaagaattctcacctgaggaatactg
aatggccaagaaacacctgaaaaaatattcagcgtccttaatcatcaggg
aaatacaaatcaaaacaaccctgagattccatctcacactagtcagaatg
ggtaagatcaaaaattcatgtgacagcagatgctgaaatggatgtggaga
aagaggaacattcttccattgttggtgagtttgcaagtttgtacaaccac
tctggaaatcagtctggctgttcctcagaaaattggacatggtattaccg
gaggatcctgcatacctctcctggcatattatccagagatgtccaaatag
tagagaaaaacatgtccactatgttcatagcagccttattatactagcag
agctagaaggacccgatgaccctcaccgagatgatacaaaaatggtactt
accaatgagatctactccctataaaagaatgattttgatcaagcatgatg
gactgagccatctgatgattaactatccagactcatgatgctactctcgg
catcggaatatgtct
gaattcctagccccattgatgctccaattgcataggactagcacaccttt
cttggataaaatagagcagaaatttttaggctttagtgttttctaaaaca
aattagttgctcataaagcaaaatctcaatctaatcaacataataaactg
ctgagaggcaaatagaatattagtctttcaaaatataggcacaaataggt
agacttcaatgcttacgtaaatacctgaagtcaccactgttcctggtgca
gtgccatttcaaccaagatattgtattcatgtcactactatgaaaatgaa
tgtaactgtaccaatttgtaaacactgaagagaaattagacaaaagtaac
aaaagggcaatgaacaaagtgactaagtagcaaaaacagctgtattaaca
tccaaagactttgtgcctcacttggacataatttttttttaattgagtca
agatacatatgatatatatatatgcctgttgtttatccacataagtgtta
atattaaattcattcttgttgaaagagaaaatttgaaggtaaatgtagga
gaacttcagtttatttgcttgtaagtttattcatagtattttctcatttg
aaatgtcatgaaataaacatagggtaatggaaaatcttccatttaatatc
agttgtgtaaaactgtggcagtggcttaaagtaggcttttgttacaaatt
aagatgttccaatgggtccacatatattcgtttgcttttattacccttgt
ggaagacttttataaaaatagaatgatgcagaaacgtccagcttccagat
atacttgctaagactttattattccaaaaaactgtctggaacatgttggg
cagcgttaacttcccacctttaagttctaagttaggtttagagggaagtg
tattctctatgggtgtgctcacatggaaaataagcggctttgaaagctga
tctgaccacttgggtctcaagaataaatgcattcactttgtaactgacac
accttgtcagagttctacggggtgaccatactgacattgtagtaataata
atggtcctccagggagagactatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52878822_52879901
seq2: B6Ng01-139K19.g_71_1145

seq1  GAATTCCTAGCCCCATTGATGCTCCAATTGCATAGGACTAGCACACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCCCCATTGATGCTCCAATTGCATAGGACTAGCACACCTTT  50

seq1  CTTGGATAAAATAGAGCAGAAATTTTTAGGCTTTAGTGTTTTCTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATAAAATAGAGCAGAAATTTTTAGGCTTTAGTGTTTTCTAAAACA  100

seq1  AATTAGTTGCTCATAAAGCAAAATCTCAATCTAATCAACATAATAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTGCTCATAAAGCAAAATCTCAATCTAATCAACATAATAAACTG  150

seq1  CTGAGAGGCAAATAGAATATTAGTCTTTCAAAATATAGGCACAAATAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGCAAATAGAATATTAGTCTTTCAAAATATAGGCACAAATAGGT  200

seq1  AGACTTCAATGCTTACGTAAATACCTGAAGTCACCACTGTTCCTGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCAATGCTTACGTAAATACCTGAAGTCACCACTGTTCCTGGTGCA  250

seq1  GTGCCATTTCAACCAAGATATTGTATTCATGTCACTACTATGAAAATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTTCAACCAAGATATTGTATTCATGTCACTACTATGAAAATGAA  300

seq1  TGTAACTGTACCAATTTGTAAACACTGAAGAGAAATTAGACAAAAGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGTACCAATTTGTAAACACTGAAGAGAAATTAGACAAAAGTAAC  350

seq1  AAAAGGGCAATGAACAAAGTGACTAAGTAGCAAAAACAGCTGTATTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCAATGAACAAAGTGACTAAGTAGCAAAAACAGCTGTATTAACA  400

seq1  TCCAAAGACTTTGTGCCTCACTTGGACATAATTTTTTTTTAATTGAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGACTTTGTGCCTCACTTGGACATAATTTTTTTTTAATTGAGTCA  450

seq1  AGATACATATGATATATATATATGCCTGTTGTTTATCCACATAAGTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATATGATATATATATATGCCTGTTGTTTATCCACATAAGTGTTA  500

seq1  ATATTAAATTCATTCTTGTTGAAAGAGAAAATTTGAAGGTAAATGTAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATTCATTCTTGTTGAAAGAGAAAATTTGAAGGTAAATGTAGGA  550

seq1  GAACTTCAGTTTATTTGCTTGTAAGTTTATTCATAGTATTTTCTCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAGTTTATTTGCTTGTAAGTTTATTCATAGTATTTTCTCATTTG  600

seq1  AAATGTCATGAAATAAACATAGGGTAATGGAAAATCTTCCATTTAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATGAAATAAACATAGGGTAATGGAAAATCTTCCATTTAATATC  650

seq1  AGTTGTGTAAAACTGTGGCAGTGGCTTAAAGTAGGCTTTTGTTACAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTAAAACTGTGGCAGTGGCTTAAAGTAGGCTTTTGTTACAAATT  700

seq1  AAGATGTTCCAATGGGTCCACATATATTCGTTTGCTTTTATTACCCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTCCAATGGGTCCACATATATTCGTTTGCTTTTATTACCCTTGT  750

seq1  GGAAGACTTTTATAAAAATAGAATGATGCAGAAACGTCCAGCTTCCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACTTTTATAAAAATAGAATGATGCAGAAACGTCCAGCTTCCAGAT  800

seq1  ATACTTGCTAAGACTTTATTATTCCAAAAAACTGTCTGGAACATGTTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGCTAAGACTTTATTATTCCAAAAAACTGTCTGGAACATGTTGGG  850

seq1  CAGCGTTAACTTCCCACCTTTAAGTTCTAAGTTAGGTTTAGAGGGAAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTTAACTTCCCACCTTTAAGTTCTAAGTTAGGTTTAGAGGGAAGTG  900

seq1  TATTCTCTATGGGTGTGCTCACATGGAAAATAAGCGGCTTTTGAAAGCTG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTCTCTATGGGTGTGCTCACATGGAAAATAAGCGGC-TTTGAAAGCTG  949

seq1  ATCTGACCACTTGGGTCTCAAGAATAAATGCATTTCACTTTGTAACTGAC  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCTGACCACTTGGGTCTCAAGAATAAATGCA-TTCACTTTGTAACTGAC  998

seq1  ACACCTTGTCAGAGTCCTACCGGGTGAACCATACTGACATTGTAGTAATT  1050
      ||||||||||||||| |||| ||||| |||||||||||||||||||||| 
seq2  ACACCTTGTCAGAGTTCTACGGGGTG-ACCATACTGACATTGTAGTAATA  1047

seq1  AATATGGTCTCTCCATGGGAGAGACCATAT  1080
      |  |||||| ||||| ||||||||| ||||
seq2  ATAATGGTC-CTCCA-GGGAGAGACTATAT  1075