BAC Information

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BAC

Clone NameB6Ng01-140E11
Chromosome8 (Build37)X (Build37)
Map Location 36,725,644 - 36,726,71175,724,951 - 75,725,373
singlet/doubletsingletsinglet
Overlap geneMfhas1
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
Downstream geneLOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140E11.bB6Ng01-140E11.g
ACCDH939053DH939054
length1,057122
definitionDH939053|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E11, 5' end.DH939054|Mus musculus domesticus DNA, BAC clone: B6Ng01-140E11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,725,644 - 36,726,711)(75,724,951 - 75,725,373)
sequence
gaattcaattccctagaacctcctccacaagggtgtcctctgtttacata
tacccaccatggcacatgcaacacacacacacacacatatgcacacaaat
gcatataaacatacatgcacaggcagacacacacacgcatgcacacacgc
acacacacacattcatgcacatgcacacacatgcatgcacacacacacaa
gcatgcacatacatatgcatacgcacacacacacacacacacacacacac
acacacacacttaaaattctgtatttctgaacacctcttcttcagctgag
ctcacaatgatggggcatgtgccagcactgaatcagaatcctggagtgta
ccccacatcagtgcttaccatgccccactgagcaggcagcacatcctcat
tttgcaaatgaagaatctgctgtctcacttagggtttctattactgtgat
aaacaccacgaccataaacaagtcagagagaaaaggttttattacacctt
acaactctcaggttacacaccattgctaaggaacttcagggcaggaactc
aaacagggaagggacctggaagaaggagatgactcagaggccatacacga
atgttgcttactggcttgctcagcctagtttttacaaccctcaggattac
caggccagaggatcacccacagtgctgggtcctacagtgagctaggccct
ttacatcaatcaccaatcaaaaaaatgtaccacaggcttgtccagtgacc
aatctggtggggacattttttttccccagttgaggttctccgttccagaa
tgactatgtcaaacagacataaaacaagccagctcaggaagttatgagat
gtacccagcaacaagggttaactagtagaaggcatgggagaccctttgct
gccagacttcagcacctccctaagcaggactgcttctctaccaggatgca
tctttctggagggctgcctaacttcctcatttaaagaatttaggcactgg
acgtattatacttttagaaggacattcattcccgagacgaacatttttct
gcgtctt
actctgtatgctaggctgacctccgactcaaagatccacctgactctgcc
tcacaagtgctgggattaaaggtgctactctctgggcacagatttttaaa
ataaatatatttgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_36725644_36726711
seq2: B6Ng01-140E11.b_48_1104 (reverse)

seq1  AAGACGCAGAAAAATGTTCTGCTCGGGGAATGAATGTGCCTCTAAAAGTA  50
      |||||||||||||||||||  ||| |||||||||||| | ||||||||||
seq2  AAGACGCAGAAAAATGTTCGTCTC-GGGAATGAATGTCCTTCTAAAAGTA  49

seq1  TAAATACGT-CAGTGCCTAAATTCCTTTTAAAATGGTGAAGTTAGGCAGC  99
      | ||||||| ||||||||||||||   || |||||  |||||||||||| 
seq2  T-AATACGTCCAGTGCCTAAATTC---TTTAAATGAGGAAGTTAGGCAG-  94

seq1  CCCTCCAGGAAAGATGCATCCTGGTTAGAGAAGCAGTCCCTGCCTTAGGG  149
      ||||||| |||||||||||||||| |||||||||||| |||| |||||||
seq2  CCCTCCA-GAAAGATGCATCCTGG-TAGAGAAGCAGT-CCTG-CTTAGGG  140

seq1  AGGTGCTGAAGTCTGGCAGCAAAGGGTTCTCCCATGCCTTCTACTAGTTA  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGTGCTGAAGTCTGGCAGCAAAGGG-TCTCCCATGCCTTCTACTAGTTA  189

seq1  ACCCTTGTTGCTGGGTACATCTCATAACTTCCCTGAGCTGGCTTGTTTTA  249
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACCCTTGTTGCTGGGTACATCTCATAACTT-CCTGAGCTGGCTTGTTTTA  238

seq1  TGTCTGTTTGACATAGTCATTCTGGAACGGAGAACCTCAACTGGGGAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTTTGACATAGTCATTCTGGAACGGAGAACCTCAACTGGGGAAAA  288

seq1  AAAATGTCCCCACCAGATTGGTCACTGGACAAGCCTGTGGTACATTTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCCCCACCAGATTGGTCACTGGACAAGCCTGTGGTACATTTTTT  338

seq1  TGATTGGTGATTGATGTAAAGGGCCTAGCTCACTGTAGGACCCAGCACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTGATTGATGTAAAGGGCCTAGCTCACTGTAGGACCCAGCACTG  388

seq1  TGGGTGATCCTCTGGCCTGGTAATCCTGAGGGTTGTAAAAACTAGGCTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGATCCTCTGGCCTGGTAATCCTGAGGGTTGTAAAAACTAGGCTGA  438

seq1  GCAAGCCAGTAAGCAACATTCGTGTATGGCCTCTGAGTCATCTCCTTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGTAAGCAACATTCGTGTATGGCCTCTGAGTCATCTCCTTCTT  488

seq1  CCAGGTCCCTTCCCTGTTTGAGTTCCTGCCCTGAAGTTCCTTAGCAATGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCCTTCCCTGTTTGAGTTCCTGCCCTGAAGTTCCTTAGCAATGG  538

seq1  TGTGTAACCTGAGAGTTGTAAGGTGTAATAAAACCTTTTCTCTCTGACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACCTGAGAGTTGTAAGGTGTAATAAAACCTTTTCTCTCTGACTT  588

seq1  GTTTATGGTCGTGGTGTTTATCACAGTAATAGAAACCCTAAGTGAGACAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGTCGTGGTGTTTATCACAGTAATAGAAACCCTAAGTGAGACAG  638

seq1  CAGATTCTTCATTTGCAAAATGAGGATGTGCTGCCTGCTCAGTGGGGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTTCATTTGCAAAATGAGGATGTGCTGCCTGCTCAGTGGGGCAT  688

seq1  GGTAAGCACTGATGTGGGGTACACTCCAGGATTCTGATTCAGTGCTGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCACTGATGTGGGGTACACTCCAGGATTCTGATTCAGTGCTGGCA  738

seq1  CATGCCCCATCATTGTGAGCTCAGCTGAAGAAGAGGTGTTCAGAAATACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCCATCATTGTGAGCTCAGCTGAAGAAGAGGTGTTCAGAAATACA  788

seq1  GAATTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTA  838

seq1  TGCATATGTATGTGCATGCTTGTGTGTGTGTGCATGCATGTGTGTGCATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGTATGTGCATGCTTGTGTGTGTGTGCATGCATGTGTGTGCATG  888

seq1  TGCATGAATGTGTGTGTGTGCGTGTGTGCATGCGTGTGTGTGTCTGCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAATGTGTGTGTGTGCGTGTGTGCATGCGTGTGTGTGTCTGCCTG  938

seq1  TGCATGTATGTTTATATGCATTTGTGTGCATATGTGTGTGTGTGTGTGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTATGTTTATATGCATTTGTGTGCATATGTGTGTGTGTGTGTGTT  988

seq1  GCATGTGCCATGGTGGGTATATGTAAACAGAGGACACCCTTGTGGAGGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCATGGTGGGTATATGTAAACAGAGGACACCCTTGTGGAGGAG  1038

seq1  GTTCTAGGGAATTGAATTC  1068
      |||||||||||||||||||
seq2  GTTCTAGGGAATTGAATTC  1057

seq1: chrX_75724951_75725373
seq2: B6Ng01-140E11.g_105_193 (reverse)

seq1  ACACACACACATACATACATACATACATACACACACACACACAAACGACA  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACACATACACACACACACACAAACACAACACACATTTTCGAAAAAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGAAAATTGTCAAGCAGAAATATGAGGCCTAAATAAAATAGCTATAATT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCAGCTGAAACGTGAATGAAATATATTTATTTTAGGAACTGTCTGTTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGCACCACAGAGCACATAATCTCAAACCTAAAAATGTTTGGATAATTA  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACATCTATAAAGGTGAAATGTTTAATTAAAAATAGTACGGTCAGTAGGTG  300
                                                        
seq2  --------------------------------------------------  0

seq1  GCAGAGTTGAGACACCAAATTAGATCTATCTCATTTTCTGATGTTTCAGA  350
               | ||||  || || || |||              ||| | |
seq2  -------ACACACACACAAATATATTTAT--------------TTTAAAA  29

seq1  ATGACATCCAGAAGCTGGGCAGTG-GTGGCACATGCCTTTCATCCCAGCA  399
      ||      | |    ||  ||| | || |||    ||||| |||||||||
seq2  AT------CTG----TGCCCAGAGAGTAGCA----CCTTTAATCCCAGCA  65

seq1  CTTGGGAGGCAGAGGCAGGCGGAT  423
      |||| ||||||||| |||| ||||
seq2  CTTGTGAGGCAGAGTCAGGTGGAT  89