BAC Information

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BAC

Clone NameB6Ng01-140N23
Chromosome8 (Build37)4 (Build37)
Map Location 78,436,873 - 78,438,03479,221,286 - 79,221,806
singlet/doubletsingletsinglet
Overlap gene1700007B14Rik
Upstream geneHmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N23.bB6Ng01-140N23.g
ACCDH939484DH939485
length1,1431,072
definitionDH939484|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N23, 5' end.DH939485|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(78,436,873 - 78,438,034)(79,221,286 - 79,221,806)
sequence
gaattctgtcccccaaaccatcactgtttaccatgtttgctgtgcatctc
tattaccatgaatcctctgcttacatatatctacccacgggtagatgaac
atacaggcaaattatagaaacacattaaagcacaaatttcaaaatacaag
accaaagataaaactaaatggatgtaagattttattttacactctggttc
acctttctggcaactttagaaacgattcttttaggtggtgtcaatttaga
agagatctaaagatgaaggaatgttgaaatcaattggtgtttcatttaag
agacaaatccaaagagaaatatcaagtggctgtaggaggaagcctactag
agggaggtaggagcagggctaaccttgaagtatggagcagagcagggcta
tctaaagctaagcaggaataatgtgggtttgtggcatctctgaggtcctt
tcctccctgctgacatcattaccttactgcattccctgtgtcctctgcat
gttttccttcagatcatgttaaggaagggagagaggcaaatggaagggaa
aatacagcacatccagtgaatttaagggccctccttgcatggccaacagg
tgagtgtacaaatacttagccgtctacattttcaagtcatacttaaaact
aaaaatacatatttgctttgctgtatttttaaatcaatttcattaaccaa
tggagaattttgattctcgtgattattaaacattaatttttccttacaga
agctgaggagttttgttaaaaatctgtgaaatgttgacatgtgagaatat
ttttccctaaaagtgactaaacatttcatacatctgcagataggtgcaaa
actgctagcaactccctccttcagttacaaaattaatgagtgttcattga
agccataacaaagaactctcctctgggcatgttataaaaatgtgtctagg
tctcatatcaatacaatcttcttgttagagagccagtgtttgaaatatgt
gtatttatttagatgacaaataccatcaaatatctttgattgtctcatat
gtgaaccctggtctacttatctactctacttaaaatggagcttctaagag
ggggataaagcagtatcattaatgttctcttaatcattcatgc
gaattctttgtttaactctgtaccccatattttagtagagttatttgatt
ttctggagtctatcttcttgagttctttatatattttggatattagtccc
ctacctgatttaggattggcaaagatccttttccaatcttttggtggcct
ttttgttttattgtcttttgccttacagaagcttggcaattttatgaggt
cccatttgtcaatcctcgatcttacagcacaagccattgctgttctgttc
aggaatttttcccctgtgccaatatcttcgaggcttttccccactttctc
ctctataagtttcagtgtctctggttttatgtggagttccttgatacact
tagacttgactttaggacaaggagataacaatgggtaaattcgcattctt
ctacatgataaccaccagttgtaccagcatcatttgttgaaaatgctgtc
ttattttcactggatggttttagctcccttgtcaaagatcaagtgaccat
atgtgtgtgggttcatttctgggtcttcaattcaattccattgatctacc
tgtctgtcattgtaccagtaccatgaagtttttattacaattgctctgta
gtacagcttgaggtcaggcatggtgatttcaccagaggttcttctattgt
tgagaatagtttttgctatcctaggttttttgttactccagatgaagttt
caaattgccctttcaaactcagtgaagaattgttggaattttgatgggga
ttgcattgaatctgtagattgctttcggcaggatagtcattttgcctata
ttaatcctgtcaatccatgagcttgggagatctttccaactcctgagatc
ttctttgaattctttcatcagagacttgaagttcttctcatacagatctt
tcacttccttagcagagtcacaccaaggtatttatagtattgtgactatg
agagggtgttgtttccttaatttctttcctcattcttgtatcactgtgta
aagaaagccactgattgttgagttattttatatcagcacttactggagcc
ggtttatcaggtttaggagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_78436873_78438034
seq2: B6Ng01-140N23.b_46_1188 (reverse)

seq1  GCATGAA--ATAAAGAGAACATTAAATTTAATAAACTGCTTTTTATCCCC  48
      |||||||  || |||||||||||||   | ||  |||||  |||||||||
seq2  GCATGAATGATTAAGAGAACATTAA---TGAT--ACTGC--TTTATCCCC  43

seq1  CTCTTAGGAAAGCTTCCATTTTAAGTTAGGAGTAGATAAGGTTAGACAGG  98
      |||||||  |||| ||||||||||||   |||||||||||  |||||  |
seq2  CTCTTAG--AAGC-TCCATTTTAAGT--AGAGTAGATAAG--TAGACCAG  86

seq1  GGTTCACATATGAGACAAATCAAAAAGAATTATTTTAATGGTATTTGTCA  148
      |||||||||||||||| ||||||| | |     ||| |||||||||||||
seq2  GGTTCACATATGAGAC-AATCAAAGATA-----TTTGATGGTATTTGTCA  130

seq1  TCTTAAATAAATACACATATTTCAAACCACTGGCTCTCTAACAAG-AGAT  197
      || ||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  TC-TAAATAAATACACATATTTCAAA-CACTGGCTCTCTAACAAGAAGAT  178

seq1  TGTATTGATATGAGACCTAGACACATTTTTATAACATGCCCAGAGGAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGATATGAGACCTAGACACATTTTTATAACATGCCCAGAGGAGAG  228

seq1  TTCTTTGTTATGGCTTCAATGAACACTCATTAATTTTGTAACTGAAGGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTATGGCTTCAATGAACACTCATTAATTTTGTAACTGAAGGAG  278

seq1  GGAGTTGCTAGCAGTTTTGCACCTATCTGCAGATGTATGAAATGTTTAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCTAGCAGTTTTGCACCTATCTGCAGATGTATGAAATGTTTAGT  328

seq1  CACTTTTAGGGAAAAATATTCTCACATGTCAACATTTCACAGATTTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAGGGAAAAATATTCTCACATGTCAACATTTCACAGATTTTTAA  378

seq1  CAAAACTCCTCAGCTTCTGTAAGGAAAAATTAATGTTTAATAATCACGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCCTCAGCTTCTGTAAGGAAAAATTAATGTTTAATAATCACGAG  428

seq1  AATCAAAATTCTCCATTGGTTAATGAAATTGATTTAAAAATACAGCAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAATTCTCCATTGGTTAATGAAATTGATTTAAAAATACAGCAAAG  478

seq1  CAAATATGTATTTTTAGTTTTAAGTATGACTTGAAAATGTAGACGGCTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTATTTTTAGTTTTAAGTATGACTTGAAAATGTAGACGGCTAA  528

seq1  GTATTTGTACACTCACCTGTTGGCCATGCAAGGAGGGCCCTTAAATTCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTACACTCACCTGTTGGCCATGCAAGGAGGGCCCTTAAATTCAC  578

seq1  TGGATGTGCTGTATTTTCCCTTCCATTTGCCTCTCTCCCTTCCTTAACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGCTGTATTTTCCCTTCCATTTGCCTCTCTCCCTTCCTTAACAT  628

seq1  GATCTGAAGGAAAACATGCAGAGGACACAGGGAATGCAGTAAGGTAATGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAAGGAAAACATGCAGAGGACACAGGGAATGCAGTAAGGTAATGA  678

seq1  TGTCAGCAGGGAGGAAAGGACCTCAGAGATGCCACAAACCCACATTATTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCAGGGAGGAAAGGACCTCAGAGATGCCACAAACCCACATTATTC  728

seq1  CTGCTTAGCTTTAGATAGCCCTGCTCTGCTCCATACTTCAAGGTTAGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAGCTTTAGATAGCCCTGCTCTGCTCCATACTTCAAGGTTAGCCC  778

seq1  TGCTCCTACCTCCCTCTAGTAGGCTTCCTCCTACAGCCACTTGATATTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTACCTCCCTCTAGTAGGCTTCCTCCTACAGCCACTTGATATTTC  828

seq1  TCTTTGGATTTGTCTCTTAAATGAAACACCAATTGATTTCAACATTCCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGATTTGTCTCTTAAATGAAACACCAATTGATTTCAACATTCCTT  878

seq1  CATCTTTAGATCTCTTCTAAATTGACACCACCTAAAAGAATCGTTTCTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAGATCTCTTCTAAATTGACACCACCTAAAAGAATCGTTTCTAA  928

seq1  AGTTGCCAGAAAGGTGAACCAGAGTGTAAAATAAAATCTTACATCCATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCAGAAAGGTGAACCAGAGTGTAAAATAAAATCTTACATCCATTT  978

seq1  AGTTTTATCTTTGGTCTTGTATTTTGAAATTTGTGCTTTAATGTGTTTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATCTTTGGTCTTGTATTTTGAAATTTGTGCTTTAATGTGTTTCT  1028

seq1  ATAATTTGCCTGTATGTTCATCTACCCGTGGGTAGATATATGTAAGCAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGCCTGTATGTTCATCTACCCGTGGGTAGATATATGTAAGCAGA  1078

seq1  GGATTCATGGTAATAGAGATGCACAGCAAACATGGTAAACAGTGATGGTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATGGTAATAGAGATGCACAGCAAACATGGTAAACAGTGATGGTT  1128

seq1  TGGGGGACAGAATTC  1162
      |||||||||||||||
seq2  TGGGGGACAGAATTC  1143

seq1: chr4_79221286_79221806
seq2: B6Ng01-140N23.g_632_1138 (reverse)

seq1  GAACTCCTAAACCTGATAAA-CAGCTTCGGTGAAGTAGCTGGATATAAAA  49
      |||||||||||||||||||| | ||| | || |||| ||| |||||||||
seq2  GAACTCCTAAACCTGATAAACCGGCTCCAGT-AAGT-GCT-GATATAAAA  47

seq1  TTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCT  99
       |||||| ||||| ||| ||| |||||| ||||||  | ||| | ||  |
seq2  -TAACTC-AACAA-TCAGTGG-CTTTCTTTACACAGTG-ATACA-AGAAT  91

seq1  GA-GAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATA  148
      || ||||||||||| ||||||||||||| |||| |||||||| |||| ||
seq2  GAGGAAAGAAATTAAGGAAACAACACCC-TCTC-ATAGTCAC-AATACTA  138

seq1  TAAAATATCTCGGTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGAT  198
      | ||||| || |||||||||||  ||||||||||||||||||||||||| 
seq2  T-AAATACCTTGGTGTGACTCT-GCTAAGGAAGTGAAAGATCTGTATGAG  186

seq1  AAAAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATG  248
      || |||||||||||||||| ||||||| | |||||||||||||| || ||
seq2  AAGAACTTCAAGTCTCTGATGAAAGAATTCAAAGAAGATCTCAGGAGTTG  236

seq1  GAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGG  298
      ||||||||||||| |||||||||||| |||||| || || |  |||||| 
seq2  GAAAGATCTCCCAAGCTCATGGATTGACAGGATTAATATAGGCAAAATGA  286

seq1  CTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT  348
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGCCGAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT  336

seq1  CCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTG  398
      ||||  ||||||||||  || || ||| | |||||||| || ||||||||
seq2  CCAA--CAATTCTTCACTGAGTTTGAAAGGGCAATTTGAAACTTCATCTG  384

seq1  GAATAACAAAAAAACTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAA  448
      || |||||||||| ||||||||||||||||| |||||||  ||| |||||
seq2  GAGTAACAAAAAACCTAGGATAGCAAAAACTATTCTCAACAATAGAAGAA  434

seq1  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT  498
      ||||||||| |||||||||||||||||| ||||| |||||||||||||||
seq2  CCTCTGGTGAAATCACCATGCCTGACCTCAAGCTGTACTACAGAGCAATT  484

seq1  GTGGTAAAAACTGCATGGTACTG  521
      ||  |||||||| ||||||||||
seq2  GTAATAAAAACTTCATGGTACTG  507