BAC Information

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BAC

Clone NameB6Ng01-141C19
Chromosome8 (Build37)
Map Location 54,927,549 - 55,099,896
singlet/doubletdoublet
Overlap genenone
Upstream geneAga, Neil3, LOC100040107
Downstream geneVegfc, Spcs3, Asb5, Spata4, Wdr17, Gpm6a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141C19.bB6Ng01-141C19.g
ACCDH939698DH939699
length1,1321,005
definitionDH939698|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C19, 5' end.DH939699|Mus musculus domesticus DNA, BAC clone: B6Ng01-141C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,927,549 - 54,928,697)(55,098,935 - 55,099,896)
sequence
gaattctatcttttaaaaatagacagtgtactttttatataccattattc
tacaatgaaaccataacttccatttaactgtgattcttgtccaaggatac
cattttcaaaataaaaggaagaaaacagtttcatagtttcaaatacttct
ttgttatagtgttgtgttttactagtatctaatgttctctgttccttaac
aaaatagagataaagagtgttaagcaggtgtaaaggagaaaatttgatca
tatgaattgtgaatggataattagctaattatactaactctatagagtct
caggctttttccaaaactgacatttaatgtctaaccatttaaggtaataa
taataataaatcaaaattataaaccttaaaataattaaaggatgaaaata
ttcctgccaatgttaaaggtttaaagtcttaaaactgataagcaggaaca
gatcaaaaacttgtcttccattataaaagaaatagtcatagtcttaagtc
aaatatttcaagaatttataggaattgtaaatattagacaagacatgctt
gtcaaaattttacatacttaaatggaatattgtttagacattttaatatt
ttttattttctacatttcaggattgctgtagtagtggatccagggtgctg
ttcagagcttctgttatcagtgggggtaaaactgcaggtagggcaggcac
aggagacaaagaagcatgtagagtggaccaaaaaaagtgaaaataaacct
gcaagagggtggagctaattctggaatctaaacctactaaaggaaactgc
ttgcaaatttgaaaccctggttttcattgtaaatcagtttagcatgcttt
tcaagttaacacttgtacattcatagagtgcccaagcaagcctggggcgg
gtggtagataccccagaactagagttatagactgttatgagctgcggtct
gggtgctcggaattgaatctctatcttttaaagagcagtcagtgatgtta
gatgctgatcatctcttcagcttgagaaagaatatatgattactagttaa
ttgatactattggtctttgactgatggatatagcattctactgacataac
tcccaaaggattcctttttcacttgaaactaa
gaattcagtaagaaggttatctattcggtaacattaaaatttacttctag
tagagacggagagccagaatagctcagggctggtctgcagtgtttacttg
ggacaatagccagtcttacccagacaagggaattcacaatggcctagcaa
ataagtgggtttaccatgaaagagttagggaatccccctgacacaggttt
tttcactaggcccaaagaaacagtataaatcaggcatttactaagaaccc
ctggtggtgggcttaacaatagactagcattacaacagtctcccttctta
gttgcagcagcctagtccccgccttgccttcttttgatgtatacattcct
tttgtattgtgtcactgtaactgtatctctcctggtttcttgtggttctt
ctgtgtaaatagcatgatgctcgacttgaaaaattacattcagattcgac
acaatttctcatgttgattctgtttgtcattcattcccctactccttgtc
cacctgaaaccagagacccgttctatgcagacagggaccaagaagggtct
gctgcatgtaacatttcatgttttactagtaatttattttttttctattc
actttttgggaatggaaaagagaatctcattatttccaccagttctttac
ctccacctcagctagattgtgtcatggtatgttcttatacatccttcttt
gaatgcatgtcttcctttaaaatgcacgcatgtgaattatacaccataaa
aacttcagcacttaagccgggcgtggtggcgcacgcctttaatcccagca
ctcgggaggcagaggcaggcagatttctgagttcgtggccagcctggtct
acaaagtgagctccaggacagccagagctataagagaaactctgtctcta
aaacacacacaaaaaaaaacaaaacaaaaaaacaacaacaaaaaacttca
gcacttatactggctggatcacgacttaaatatgaataatgaggtcagaa
tttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_54927549_54928697
seq2: B6Ng01-141C19.b_48_1179

seq1  GAATTCTATCTTTTAAAAATAGACAGTGTACTTTTTATATACCATTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTTTTAAAAATAGACAGTGTACTTTTTATATACCATTATTC  50

seq1  TACAATGAAACCATAACTTCCATTTAACTGTGATTCTTGTCCAAGGATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAAACCATAACTTCCATTTAACTGTGATTCTTGTCCAAGGATAC  100

seq1  CATTTTCAAAATAAAAGGAAGAAAACAGTTTCATAGTTTCAAATACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAAAATAAAAGGAAGAAAACAGTTTCATAGTTTCAAATACTTCT  150

seq1  TTGTTATAGTGTTGTGTTTTACTAGTATCTAATGTTCTCTGTTCCTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAGTGTTGTGTTTTACTAGTATCTAATGTTCTCTGTTCCTTAAC  200

seq1  AAAATAGAGATAAAGAGTGTTAAGCAGGTGTAAAGGAGAAAATTTGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAGATAAAGAGTGTTAAGCAGGTGTAAAGGAGAAAATTTGATCA  250

seq1  TATGAATTGTGAATGGATAATTAGCTAATTATACTAACTCTATAGAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTGTGAATGGATAATTAGCTAATTATACTAACTCTATAGAGTCT  300

seq1  CAGGCTTTTTCCAAAACTGACATTTAATGTCTAACCATTTAAGGTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTTTCCAAAACTGACATTTAATGTCTAACCATTTAAGGTAATAA  350

seq1  TAATAATAAATCAAAATTATAAACCTTAAAATAATTAAAGGATGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAAATCAAAATTATAAACCTTAAAATAATTAAAGGATGAAAATA  400

seq1  TTCCTGCCAATGTTAAAGGTTTAAAGTCTTAAAACTGATAAGCAGGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCAATGTTAAAGGTTTAAAGTCTTAAAACTGATAAGCAGGAACA  450

seq1  GATCAAAAACTTGTCTTCCATTATAAAAGAAATAGTCATAGTCTTAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAAACTTGTCTTCCATTATAAAAGAAATAGTCATAGTCTTAAGTC  500

seq1  AAATATTTCAAGAATTTATAGGAATTGTAAATATTAGACAAGACATGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCAAGAATTTATAGGAATTGTAAATATTAGACAAGACATGCTT  550

seq1  GTCAAAATTTTACATACTTAAATGGAATATTGTTTAGACATTTTAATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTTTACATACTTAAATGGAATATTGTTTAGACATTTTAATATT  600

seq1  TTTTATTTTCTACATTTCAGGATTGCTGTAGTAGTGGATCCAGGGTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTCTACATTTCAGGATTGCTGTAGTAGTGGATCCAGGGTGCTG  650

seq1  TTCAGAGCTTCTGTTATCAGTGGGGGTAAAACTGCAGGTAGGGCAGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCTTCTGTTATCAGTGGGGGTAAAACTGCAGGTAGGGCAGGCAC  700

seq1  AGGAGACAAAGAAGCATGTAGAGTGGACCAAAAAAAGTGAAAATAAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACAAAGAAGCATGTAGAGTGGACCAAAAAAAGTGAAAATAAACCT  750

seq1  GCAAGAGGGTGGAGCTAATTCTGGAATCTAAACCTACTAAAGGAAACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGGTGGAGCTAATTCTGGAATCTAAACCTACTAAAGGAAACTGC  800

seq1  TTGCAAATTTGAAACCCTGGTTTTCATTGTAAATCAGTTTAGCATGC-TT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGCAAATTTGAAACCCTGGTTTTCATTGTAAATCAGTTTAGCATGCTTT  850

seq1  TCAAGTTAACACTTGTACATTCATAGAGTGCCCAAGCAAGCCTGGGGCGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAACACTTGTACATTCATAGAGTGCCCAAGCAAGCCTGGGGCGG  900

seq1  GTGGTAGATACCCCAGAACTAGAGTTATAAGACTGTTATGAGCTGCGGTC  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGGTAGATACCCCAGAACTAGAGTTAT-AGACTGTTATGAGCTGCGGTC  949

seq1  TGGGTGCTCGGAATTGAATCTCTATCTTCTAAAAGAGCAGTCAGTGATGT  999
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  TGGGTGCTCGGAATTGAATCTCTATCTT-TTAAAGAGCAGTCAGTGATGT  998

seq1  TAGATGCTGAACCATCTCTCCAGC-TGAGAAAAGAAATATAATGATTACT  1048
      ||||||||| | ||||||| |||| |||||||   ||||| |||||||||
seq2  TAGATGCTG-ATCATCTCTTCAGCTTGAGAAA--GAATAT-ATGATTACT  1044

seq1  AGTTTAATTGTATACTATTTGTTCTTTGAACTGATGAATATTAAGCATTC  1098
      || ||||||| |||||| ||| |||||| ||||||| ||||  |||||||
seq2  AG-TTAATTG-ATACTA-TTGGTCTTTG-ACTGATGGATAT--AGCATTC  1088

seq1  TAACTTAGACATAACTCACAAAAGGGAATTCCTTTTCTACTTGAATACTA  1148
      | |||  |||||||||| ||||   | |||||||||  ||||||| ||||
seq2  T-ACT--GACATAACTCCCAAA---GGATTCCTTTTTCACTTGAA-ACTA  1131

seq1  A  1149
      |
seq2  A  1132

seq1: chr8_55098935_55099896
seq2: B6Ng01-141C19.g_127_1073 (reverse)

seq1  GGAAATTCTGACCTCATAATTCATATTTAAGTCTGTGATCCAAGCAGTAT  50
      ||||||||||||||||| ||||||||||||||| ||||||||  ||||| 
seq2  GGAAATTCTGACCTCATTATTCATATTTAAGTC-GTGATCCAGCCAGTA-  48

seq1  TAAGTGCTGAAGTTTTTTTTGTTTGTTTGTTTTTTTTTGTTTTTGTTTTT  100
      ||||||||||||||||||        ||||| ||||||  ||||||||||
seq2  TAAGTGCTGAAGTTTTTT-------GTTGTTGTTTTTTTGTTTTGTTTTT  91

seq1  TTTTTGTTGTTGTTGTTTTTAGAGACAGAGTTTCTCTTTATAGCTCTGGC  150
      ||||      |||   |||||||||||||||||||| |||||||||||||
seq2  TTTT-----GTGTGTGTTTTAGAGACAGAGTTTCTC-TTATAGCTCTGGC  135

seq1  TGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCACGAACTCAGAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCACGAACTCAGAAATCT  185

seq1  GCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGC  235

seq1  CCGGCTTAAGTGCTGAAGTTTTTATGGTGTATAATTCACATGCGTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTAAGTGCTGAAGTTTTTATGGTGTATAATTCACATGCGTGCATT  285

seq1  TTAAAGGAAGACATGCATTCAAAGAAGGATGTATAAGAACATACCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGAAGACATGCATTCAAAGAAGGATGTATAAGAACATACCATGAC  335

seq1  ACAATCTAGCTGAGGTGGAGGTAAAGAACTGGTGGAAATAATGAGATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAGCTGAGGTGGAGGTAAAGAACTGGTGGAAATAATGAGATTCT  385

seq1  CTTTTCCATTCCCAAAAAGTGAATAGAAAAAAAATAAATTACTAGTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCATTCCCAAAAAGTGAATAGAAAAAAAATAAATTACTAGTAAAA  435

seq1  CATGAAATGTTACATGCAGCAGACCCTTCTTGGTCCCTGTCTGCATAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGTTACATGCAGCAGACCCTTCTTGGTCCCTGTCTGCATAGAA  485

seq1  CGGGTCTCTGGTTTCAGGTGGACAAGGAGTAGGGGAATGAATGACAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTCTGGTTTCAGGTGGACAAGGAGTAGGGGAATGAATGACAAACA  535

seq1  GAATCAACATGAGAAATTGTGTCGAATCTGAATGTAATTTTTCAAGTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAACATGAGAAATTGTGTCGAATCTGAATGTAATTTTTCAAGTCGA  585

seq1  GCATCATGCTATTTACACAGAAGAACCACAAGAAACCAGGAGAGATACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATGCTATTTACACAGAAGAACCACAAGAAACCAGGAGAGATACAG  635

seq1  TTACAGTGACACAATACAAAAGGAATGTATACATCAAAAGAAGGCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGACACAATACAAAAGGAATGTATACATCAAAAGAAGGCAAGGC  685

seq1  GGGGACTAGGCTGCTGCAACTAAGAAGGGAGACTGTTGTAATGCTAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTAGGCTGCTGCAACTAAGAAGGGAGACTGTTGTAATGCTAGTCT  735

seq1  ATTGTTAAGCCCACCACCAGGGGTTCTTAGTAAATGCCTGATTTATACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAAGCCCACCACCAGGGGTTCTTAGTAAATGCCTGATTTATACTG  785

seq1  TTTCTTTGGGCCTAGTGAAAAAACCTGTGTCAGGGGGATTCCCTAACTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGGCCTAGTGAAAAAACCTGTGTCAGGGGGATTCCCTAACTCT  835

seq1  TTCATGGTAAACCCACTTATTTGCTAGGCCATTGTGAATTCCCTTGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTAAACCCACTTATTTGCTAGGCCATTGTGAATTCCCTTGTCTG  885

seq1  GGTAAGACTGGCTATTGTCCCAAGTAAACACTGCAGACCAGCCCTGAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGACTGGCTATTGTCCCAAGTAAACACTGCAGACCAGCCCTGAGCT  935

seq1  ATTCTGGCTCTC  962
      ||||||||||||
seq2  ATTCTGGCTCTC  947