BAC Information

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BAC

Clone NameB6Ng01-141F21
Chromosome8 (Build37)
Map Location 17,682,717 - 17,822,160
singlet/doubletdoublet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1, Angpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141F21.bB6Ng01-141F21.g
ACCDH939843DH939844
length1,0441,120
definitionDH939843|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F21, 5' end.DH939844|Mus musculus domesticus DNA, BAC clone: B6Ng01-141F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,821,106 - 17,822,160)(17,682,717 - 17,683,858)
sequence
gaattcaattaactaagataaatctgaaatgctgttcatattatctacat
gcaaaaagatacagaaaagggaaactgtgcatttgagtttggagatgagc
tttgaaaatgtcacctgagacttttccatgtaaatggacaatatagtgta
gtatgtgaatactagggaaagggacccgtgtctcctgtcagtgaaagttc
ctgacactacccagaggctgtctggggagatgacttgattccagaatgaa
gaattatatcgatcctctgtgtttgtttctggaaagaagagtgcctcagt
ccccatcaatccattagccctcaatagcttgttcagaatgtcctagaaca
tgttttattggggaagccatctgaaaaagtaagtaaagaaatggaatgag
tggactgcaattgtcttatggatgagatgggacaattggcatccatcagg
atgggtaaatatgcttttagcacttcaaagctgtggctcagctaaataat
ttaagcagttttgtttttaatttagcctttctcctgtgttgtaacagtta
ggtagctcctcaggtccataataattagttagaaacacaaatcaaatcct
aattcctcaggtactttgatttttcttcttaataaaaaccctgtcctgag
tctcatagaacctcagctgagttcacctgatgggagatgaccagcaggcc
ttcaggtctttgcagcgtgctgggcttcacagcacggtctgtggtggagg
agaggtcttgcttgcacacatgggaaggcagggtaagcattggtagaggc
tgggtatgctagattcaaaatagtatgatttaagggcaagtttggattgt
tattttgataaaaatcaatatgtgactcacgctatttctctcaggcaatg
aaggtggctattgagcttagttacatatttggcagtgttcgtttaaatca
cttatgaaacactaaaatcagtatctagtcccttagcctttactgggcac
tactttcgattcccttacgtgagtgaatggggggaactgtaaga
gaattcacattaaagggcaatctcataacaatgcataaattcctttcagt
gaaaacaaattcttcatatttcctttatagctgatatcaaaactctggaa
agaaataatacaaatctctttctgatacaaaacattccagaaaaagaaat
acaaacacaagagggaaatgatgtagccatctgatgtttttcactacttg
taattgagactttagacatgcaaaattaaaagtaaaagtgtattcatttg
taaaaggttaccttgaagtactgtacaacttttgtgggcactgacgagtg
tggtctttgcttccactcattttaaagaagaagtttcacacaacggtaga
aaaatttgtatgctacataatttacagtagagcactgaaatggcttttag
catttctaacactaattggtgtttttttgtttattacaacatgtaatata
tgcttctcatttgaagtgtgtgacataagattgtgtgactcactaagcaa
tgctgttgtttgagagacagttgtcttctctgaggtcacaattcccttca
gttagtgaaagacagaatgtcttactgctggtacctatggccccaaatga
gttatcatggttttgttaagtgaacattttcctcttagtaacctatagtt
taaaaggaaaagacagatgtattttgtggaaaacgaggacacttccaaaa
attcaggttcttcaaagaatcaagaacaaagacccactcagctaactctt
agaatgagcaccatggggtatggatagccaagattactagcagcagatac
tggcagaacttcattctagtcattagtctacataaatggaagcttgtgag
gttttcaggaaatacatagtgtgtgctaactgtttctaagagcctcgttg
ttctagcctgcctgagtcaaggcatcaaggagaaagaacagcaagggcta
gaacaaaggtatatcctcctgaacacacctagcagatgggagttacagct
gttacgaattctgtcccttcccctgtccccaatcaacccgccattctctc
tggctcctttctctgaaggaccctttccctctgaagatcggactgccttg
aattcctaaattagctcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_17821106_17822160
seq2: B6Ng01-141F21.b_49_1092 (reverse)

seq1  TCTTAACAGTTTCCCCCATTCCACCTCACGTAAGGGAATCGAAAGTAGTG  50
      |||| |||||| |||||||||   ||||||||||||||||||||||||||
seq2  TCTT-ACAGTTCCCCCCATTC--ACTCACGTAAGGGAATCGAAAGTAGTG  47

seq1  CCCAGTAAAAGGCTAAGGGACTAGAATACTGATTTTAGTGTTTCATAAAG  100
      |||||| ||||||||||||||||| ||||||||||||||||||||| |||
seq2  CCCAGT-AAAGGCTAAGGGACTAG-ATACTGATTTTAGTGTTTCAT-AAG  94

seq1  TGATTTAAAACGAACACTGCAAAATATGTAACTAAGCTCAATAGACACCT  150
      |||||| ||||||||||||| ||||||||||||||||||||||| |||||
seq2  TGATTT-AAACGAACACTGCCAAATATGTAACTAAGCTCAATAGCCACCT  143

seq1  TCATTTGCCTGAGAGAAATAGCGTGAGTCACATATTGATTTTTATCAAAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCA-TTGCCTGAGAGAAATAGCGTGAGTCACATATTGATTTTTATCAAAA  192

seq1  TAAACAATCCAAACTTGCCCTTAAATCATAACTATTTTGAAATCTAGCAT  250
      | ||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  T-AACAATCCAAACTTGCCCTTAAATCAT-ACTATTTTG-AATCTAGCAT  239

seq1  ACCCAGCCTCTACCAATGCTTACCCTGCCTTCCCATGTGTGCAAGCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCTCTACCAATGCTTACCCTGCCTTCCCATGTGTGCAAGCAAGA  289

seq1  CCTCTCCTCCACCACAGACCGTGCTGTGAAGCCCAGCACGCTGCAAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCCACCACAGACCGTGCTGTGAAGCCCAGCACGCTGCAAAGAC  339

seq1  CTGAAGGCCTGCTGGTCATCTCCCATCAGGTGAACTCAGCTGAGGTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGCCTGCTGGTCATCTCCCATCAGGTGAACTCAGCTGAGGTTCTA  389

seq1  TGAGACTCAGGACAGGGTTTTTATTAAGAAGAAAAATCAAAGTACCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCAGGACAGGGTTTTTATTAAGAAGAAAAATCAAAGTACCTGAG  439

seq1  GAATTAGGATTTGATTTGTGTTTCTAACTAATTATTATGGACCTGAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGGATTTGATTTGTGTTTCTAACTAATTATTATGGACCTGAGGAG  489

seq1  CTACCTAACTGTTACAACACAGGAGAAAGGCTAAATTAAAAACAAAACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAACTGTTACAACACAGGAGAAAGGCTAAATTAAAAACAAAACTG  539

seq1  CTTAAATTATTTAGCTGAGCCACAGCTTTGAAGTGCTAAAAGCATATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTATTTAGCTGAGCCACAGCTTTGAAGTGCTAAAAGCATATTTA  589

seq1  CCCATCCTGATGGATGCCAATTGTCCCATCTCATCCATAAGACAATTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGATGGATGCCAATTGTCCCATCTCATCCATAAGACAATTGCA  639

seq1  GTCCACTCATTCCATTTCTTTACTTACTTTTTCAGATGGCTTCCCCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTCATTCCATTTCTTTACTTACTTTTTCAGATGGCTTCCCCAATA  689

seq1  AAACATGTTCTAGGACATTCTGAACAAGCTATTGAGGGCTAATGGATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTCTAGGACATTCTGAACAAGCTATTGAGGGCTAATGGATTGA  739

seq1  TGGGGACTGAGGCACTCTTCTTTCCAGAAACAAACACAGAGGATCGATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGAGGCACTCTTCTTTCCAGAAACAAACACAGAGGATCGATAT  789

seq1  AATTCTTCATTCTGGAATCAAGTCATCTCCCCAGACAGCCTCTGGGTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCATTCTGGAATCAAGTCATCTCCCCAGACAGCCTCTGGGTAGT  839

seq1  GTCAGGAACTTTCACTGACAGGAGACACGGGTCCCTTTCCCTAGTATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAACTTTCACTGACAGGAGACACGGGTCCCTTTCCCTAGTATTCA  889

seq1  CATACTACACTATATTGTCCATTTACATGGAAAAGTCTCAGGTGACATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTACACTATATTGTCCATTTACATGGAAAAGTCTCAGGTGACATTT  939

seq1  TCAAAGCTCATCTCCAAACTCAAATGCACAGTTTCCCTTTTCTGTATCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTCATCTCCAAACTCAAATGCACAGTTTCCCTTTTCTGTATCTT  989

seq1  TTTGCATGTAGATAATATGAACAGCATTTCAGATTTATCTTAGTTAATTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGTAGATAATATGAACAGCATTTCAGATTTATCTTAGTTAATTG  1039

seq1  AATTC  1055
      |||||
seq2  AATTC  1044

seq1: chr8_17682717_17683858
seq2: B6Ng01-141F21.g_68_1187

seq1  GAATTCACATTAAAGGGCAATCTCATAACAATGCATAAATTCCTTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTAAAGGGCAATCTCATAACAATGCATAAATTCCTTTCAGT  50

seq1  GAAAACAAATTCTTCATATTTCCTTTATAGCTGATATCAAAACTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATTCTTCATATTTCCTTTATAGCTGATATCAAAACTCTGGAA  100

seq1  AGAAATAATACAAATCTCTTTCTGATACAAAACATTCCAGAAAAAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATACAAATCTCTTTCTGATACAAAACATTCCAGAAAAAGAAAT  150

seq1  ACAAACACAAGAGGGAAATGATGTAGCCATCTGATGTTTTTCACTACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACAAGAGGGAAATGATGTAGCCATCTGATGTTTTTCACTACTTG  200

seq1  TAATTGAGACTTTAGACATGCAAAATTAAAAGTAAAAGTGTATTCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGACTTTAGACATGCAAAATTAAAAGTAAAAGTGTATTCATTTG  250

seq1  TAAAAGGTTACCTTGAAGTACTGTACAACTTTTGTGGGCACTGACGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTTACCTTGAAGTACTGTACAACTTTTGTGGGCACTGACGAGTG  300

seq1  TGGTCTTTGCTTCCACTCATTTTAAAGAAGAAGTTTCACACAACGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTGCTTCCACTCATTTTAAAGAAGAAGTTTCACACAACGGTAGA  350

seq1  AAAATTTGTATGCTACATAATTTACAGTAGAGCACTGAAATGGCTTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTATGCTACATAATTTACAGTAGAGCACTGAAATGGCTTTTAG  400

seq1  CATTTCTAACACTAATTGGTGTTTTTTTGTTTATTACAACATGTAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTAACACTAATTGGTGTTTTTTTGTTTATTACAACATGTAATATA  450

seq1  TGCTTCTCATTTGAAGTGTGTGACATAAGATTGTGTGACTCACTAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCATTTGAAGTGTGTGACATAAGATTGTGTGACTCACTAAGCAA  500

seq1  TGCTGTTGTTTGAGAGACAGTTGTCTTCTCTGAGGTCACAATTCCCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTTTGAGAGACAGTTGTCTTCTCTGAGGTCACAATTCCCTTCA  550

seq1  GTTAGTGAAAGACAGAATGTCTTACTGCTGGTACCTATGGCCCCAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAAAGACAGAATGTCTTACTGCTGGTACCTATGGCCCCAAATGA  600

seq1  GTTATCATGGTTTTGTTAAGTGAACATTTTCCTCTTAGTAACCTATAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGGTTTTGTTAAGTGAACATTTTCCTCTTAGTAACCTATAGTT  650

seq1  TAAAAGGAAAAGACAGATGTATTTTGTGGAAAACGAGGACACTTCCAAAA  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAAAGGAAAAGACAGATGTATTTTGTGGAAAACGAGGACACTTCC-AAA  699

seq1  AATTCAGGTTCTTCAAAGAATCAAGAACAAAGACCCACTCAGCTAACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGTTCTTCAAAGAATCAAGAACAAAGACCCACTCAGCTAACTCT  749

seq1  TAGAATGAGCACCATGGGGTATGGATAGCCAAGATTACTAGCAGCAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGCACCATGGGGTATGGATAGCCAAGATTACTAGCAGCAGATA  799

seq1  CTGGCAGAACTTCATTCTAGTCATTAGTCTACATAAATGGAAGCTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAGAACTTCATTCTAGTCATTAGTCTACATAAATGGAAGCTTGTGA  849

seq1  AGTTTGTCAGGAAATACATAGTGTGTGCTAACTGTTTCTAAGAGCCTCGT  900
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTT-TCAGGAAATACATAGTGTGTGCTAACTGTTTCTAAGAGCCTCGT  898

seq1  TGTTCTAGCCTGCCTTGAAGTCAAGGCACCAAGGAAGAAAGAACAGCAAG  950
      |||||||||||||||   |||||||||| ||||| |||||||||||||||
seq2  TGTTCTAGCCTGCCT--GAGTCAAGGCATCAAGG-AGAAAGAACAGCAAG  945

seq1  GGCTAGAACAAAAGGTATATTCCTCTAGAACACA-CTAGCAGATGGGAGG  999
      ||||||||| ||||||||| |||||  ||||||| |||||||||||||| 
seq2  GGCTAGAAC-AAAGGTATA-TCCTCCTGAACACACCTAGCAGATGGGAG-  992

seq1  TTTACAGCTGTACAGAATTCTGTCCCTTCCCCTGTCCCCCATCACACCCC  1049
       ||||||||||   ||||||||||||||||||||||||| ||||    ||
seq2  -TTACAGCTGTTACGAATTCTGTCCCTTCCCCTGTCCCCAATCA---ACC  1038

seq1  CGCCCTCTCTCTCCTGGCTCTTTCTTCTTAAAGGAGCCCTTTTCCCTCTG  1099
      |||| | ||||| ||||||| ||  || | |||||  || ||||||||||
seq2  CGCCAT-TCTCT-CTGGCTCCTTTCTC-TGAAGGA--CCCTTTCCCTCTG  1083

seq1  AATGATCTGAACTGCCTTTGTAATTTCCTTAAGTTAGCTCCTT  1142
      || |||| | ||||||||   ||||  | ||| ||||||||||
seq2  AA-GATC-GGACTGCCTT--GAATT--CCTAAATTAGCTCCTT  1120