BAC Information

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BAC

Clone NameB6Ng01-141J12
Chromosome8 (Build37)
Map Location 26,226,683 - 26,347,967
singlet/doubletdoublet
Overlap geneTacc1
Upstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390
Downstream geneLOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170, Thap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141J12.bB6Ng01-141J12.g
ACCDH940014DH940015
length1,0821,072
definitionDH940014|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J12, 5' end.DH940015|Mus musculus domesticus DNA, BAC clone: B6Ng01-141J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,226,683 - 26,227,783)(26,346,860 - 26,347,967)
sequence
gaattctgaggcctccaggattgtccagagaaggaaaactgagacacaaa
tagcctagccaggcgaatgttccacctaggggcacagaaaaccaaaatga
tcagtggctcttgaagccacaacataacagacaatggctacattatccac
tgcatcgaaagatgaccacagcatctatagagagctgctatagagtctac
agaaaatggctccatcacagatagaggatgcctataacatatacaaaggg
tggctagagtacatcttaggatgactgcagcatctaagaatggttgcagc
atctacacgggatgagtacatcatctgggtatgactcccaaattataaag
gatgacagcatcagctgagcgttgctggagcatctacagtggatagctgt
agcatctgcagagattgattagctcagtatttggggataatagcagcata
tatgaagtagggttccttgactatagcatctgaagatgactacagtctct
acagcaaatgcctttagcagggaggcaaagaaggttacagcatctacaga
ggatgatgacagcatctcaggatggccacaacatatacagacgatgacta
catcatctatagtatcagaggatgacgacagcatctaaagagggtggcca
cagtgtctgtttgactgcagtacctgaagaggaccagagcatgtacactg
taggaagactatgccagatgagaataactacagcatctaaggatggctgc
agcatctacacaggatggacacggcatctacataagggtgatggctatga
catgagaataaacacagcatctacacaagatggacacagcatctgcacag
gatgaacacagcaaatatacagtgttgtgagctacctcattctaagtact
ttgttacagcaactgaaatgactgaagagcaagcaaagggaagcctgtgc
tactgaggccctgcaggtatgagcacagagtcacatttataaaagggctg
gggaagctttgtcacaggcaagaattgctcatgactctctgtacttctga
tgttgaatagcatggctcttagactcattggg
gaattctttttaacccaagtgcggctgagtggacacacatgtgacaagtc
tctccagggtcagagagcaaggactcattgttcacatggtccccacagac
ttcctgtcggatttgtggctgccctggataacgttgacatcaaggacgtc
cccattagcatgaaagtcatgtgactaatgcactcaaaggcggtttttct
tttgagggagaaactgtctttgagaatgttcacagtttgtccttcagata
aagctttttccagaactcagctgagaaatacaaagaagcagagacgtgca
tggaaacaaacgcctggcttgaggtcaaggtcatcaggatttaaagtcta
gccgctgaccttctctgagcccagggcttgggtaaaaagctcgagacaga
ctgcagagatggtttagtggttaagagaactgactgttcttccctgggcc
ttgggtttgattcccaggacccacaccgttgctcacactgctaactccaa
gctgggaatctgatattctcctttggctttccaaacccatcaggcacaca
cagagtgcacagatgtgcaagcaggcaaaaacaaacaaacaaacaaacaa
acaaataaatataaaaaataaaattaaaaatttaaaatttgcaggacatt
ggtggtgcatacctttaatcctggccctcagaaggcagaggcaggcagat
ctctgagcccaggacagccagggccatgcagagaaatcctgtcttgaaaa
gcaaacaaacaaacaaaaaagctggaggagattcattcattcattcattc
attcattcattcctaggggctttgaagactgagacagctgtggggtcagg
cacacctgggttagattctgtgacactgcattgaggacgcttactctaga
ctctgggaaatagctgccctggcttcgccagtgctgggttacagtgtgca
cgcatcctgttttatgcagagctgggatgactcagcctcagtttgcatca
gtctcctcactgaactgcgtacactcacccactctgttgtttttttaaga
ttatgatttatttagtatatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_26226683_26227783
seq2: B6Ng01-141J12.b_47_1128

seq1  GAATTCTGAGGCCTCCAGGATTGTCCAGAGAAGGAAAACTGAGACACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGCCTCCAGGATTGTCCAGAGAAGGAAAACTGAGACACAAA  50

seq1  TAGCCTAGCCAGGCGAATGTTCCACCTAGGGGCACAGAAAACCAAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTAGCCAGGCGAATGTTCCACCTAGGGGCACAGAAAACCAAAATGA  100

seq1  TCAGTGGCTCTTGAAGCCACAACATAACAGACAATGGCTACATTATCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCTCTTGAAGCCACAACATAACAGACAATGGCTACATTATCCAC  150

seq1  TGCATCGAAAGATGACCACAGCATCTATAGAGAGCTGCTATAGAGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCGAAAGATGACCACAGCATCTATAGAGAGCTGCTATAGAGTCTAC  200

seq1  AGAAAATGGCTCCATCACAGATAGAGGATGCCTATAACATATACAAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGCTCCATCACAGATAGAGGATGCCTATAACATATACAAAGGG  250

seq1  TGGCTAGAGTACATCTTAGGATGACTGCAGCATCTAAGAATGGTTGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGAGTACATCTTAGGATGACTGCAGCATCTAAGAATGGTTGCAGC  300

seq1  ATCTACACGGGATGAGTACATCATCTGGGTATGACTCCCAAATTATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACGGGATGAGTACATCATCTGGGTATGACTCCCAAATTATAAAG  350

seq1  GATGACAGCATCAGCTGAGCGTTGCTGGAGCATCTACAGTGGATAGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGCATCAGCTGAGCGTTGCTGGAGCATCTACAGTGGATAGCTGT  400

seq1  AGCATCTGCAGAGATTGATTAGCTCAGTATTTGGGGATAATAGCAGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCAGAGATTGATTAGCTCAGTATTTGGGGATAATAGCAGCATA  450

seq1  TATGAAGTAGGGTTCCTTGACTATAGCATCTGAAGATGACTACAGTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGTAGGGTTCCTTGACTATAGCATCTGAAGATGACTACAGTCTCT  500

seq1  ACAGCAAATGCCTTTAGCAGGGAGGCAAAGAAGGTTACAGCATCTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAATGCCTTTAGCAGGGAGGCAAAGAAGGTTACAGCATCTACAGA  550

seq1  GGATGATGACAGCATCTCAGGATGGCCACAACATATACAGACGATGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGACAGCATCTCAGGATGGCCACAACATATACAGACGATGACTA  600

seq1  CATCATCTATAGTATCAGAGGATGACGACAGCATCTAAAGAGGGTGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTATAGTATCAGAGGATGACGACAGCATCTAAAGAGGGTGGCCA  650

seq1  CAGTGTCTGTTTGACTGCAGTACCTGAAGAGGACCAGAGCATGTACACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CAGTGTCTGTTTGACTGCAGTACCTGAAGAGGACCAGAGCATGTACACTG  700

seq1  GAGGAAGACTATGCCAGATGAGAATAACTACAGCATCTAAGGATGGCTGC  750
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGACTATGCCAGATGAGAATAACTACAGCATCTAAGGATGGCTGC  750

seq1  AGCATCTACACAGGATGGACACGGCATCTACATAAGGGTGATGGCTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTACACAGGATGGACACGGCATCTACATAAGGGTGATGGCTATGA  800

seq1  CATGAGAATAAACACAGCATCTACACAAGATGGACACAGCATCTGCACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAATAAACACAGCATCTACACAAGATGGACACAGCATCTGCACAG  850

seq1  GATGAACACAGCAAATATACAGTGTTGTGAGCTACC-CAATCTAAGGTAC  899
      |||||||||||||||||||||||||||||||||||| || ||||| ||||
seq2  GATGAACACAGCAAATATACAGTGTTGTGAGCTACCTCATTCTAA-GTAC  899

seq1  CTTGTTACAGCAACTGAAATGACTGAAGAGCAAGCAAAGGGAAGCCTGTG  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTACAGCAACTGAAATGACTGAAGAGCAAGCAAAGGGAAGCCTGTG  949

seq1  CTACTGAGGGCCCTGCAGGGTATGAGCACAGAGTCACATTTTATTAAAAG  999
      ||||||| ||||||||| |||||||||||||||||||| |||||  ||| 
seq2  CTACTGA-GGCCCTGCA-GGTATGAGCACAGAGTCACA-TTTAT--AAAA  994

seq1  GGGCTGGGGAAGCTTTTGGTCACCAGGCCAAAGAATTGCTCCAATGACTC  1049
      ||||||||||||||||  |||| |||||  |||||||||||  |||||||
seq2  GGGCTGGGGAAGCTTT--GTCA-CAGGC--AAGAATTGCTC--ATGACTC  1037

seq1  TCTGTACCTCTGGAGTGGTTTGAATAGGCATGGGCCCCATAGACTCATTG  1099
      ||||||| ||||  |    ||||||| ||||||  | | |||||||||||
seq2  TCTGTACTTCTGATG----TTGAATA-GCATGG--CTCTTAGACTCATTG  1080

seq1  GG  1101
      ||
seq2  GG  1082

seq1: chr8_26346860_26347967
seq2: B6Ng01-141J12.g_67_1138 (reverse)

seq1  GCATATACATAAAATAAATCAATAAATCCTTAAAAAAAAACAACAGAGGT  50
      ||||||||   ||||||||||   |||| |   |||||||||||||| ||
seq2  GCATATAC--TAAATAAATCA--TAATCTT---AAAAAAACAACAGA-GT  42

seq1  GGTTGAGTTGGTAACGCAGCTCAGTTGAGAGAGAACCTGATTGGCAAACC  100
      || |||||  || |||||| |||| |||| ||||  |||||  ||||| |
seq2  GGGTGAGT--GT-ACGCAGTTCAG-TGAG-GAGA--CTGAT--GCAAA-C  82

seq1  TGAGGCCTTGGGTTCAATTCCCAGCTCTGCATAAAACCAGGATTGGCCGT  150
      ||||||  || | |||  |||||||||||||||||| ||||||    |||
seq2  TGAGGC--TGAG-TCA--TCCCAGCTCTGCATAAAA-CAGGAT---GCGT  123

seq1  GCACACCTGTAACCCCAGCACTGGCGAAGCCAGGGCAGCTATTTCCCCAG  200
      ||||| |||||| ||||||||||||||||||||||||||||||| |||||
seq2  GCACA-CTGTAA-CCCAGCACTGGCGAAGCCAGGGCAGCTATTT-CCCAG  170

seq1  AGTCCTAGAGTAAGCGTCCTCAATGCAGTGTCACAAGAATTCTAACCCAG  250
      ||| |||||||||||||||||||||||||||||| |||| ||||||||||
seq2  AGT-CTAGAGTAAGCGTCCTCAATGCAGTGTCAC-AGAA-TCTAACCCAG  217

seq1  GTGTGCCTGACCCCACAGCTGTCCTCAGTCCTCAAAGCCCCTAGGAATGA  300
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GTGTGCCTGACCCCACAGCTGT-CTCAGTCTTCAAAGCCCCTAGGAATGA  266

seq1  ATGAATGAATGAATGAATGAATGAATCTCCTCCAGCTTTTTTGTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGAATGAATGAATGAATGAATCTCCTCCAGCTTTTTTGTTTGTTT  316

seq1  TGTTTTGCTTTTCAAGACAGGATTTCTCTGCATGGCCCTGGCTGTCCTGG  400
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --GTTTGCTTTTCAAGACAGGATTTCTCTGCATGGCCCTGGCTGTCCTGG  364

seq1  GCTCAGAGATCTGCCTGCCTCTGCCTTCTGAGGGCCAGGATTAAAGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGATCTGCCTGCCTCTGCCTTCTGAGGGCCAGGATTAAAGGTAT  414

seq1  GCACCACCAATGTCCTGCAAATTTTAAATTTTTAATTTTATTTTTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCAATGTCCTGCAAATTTTAAATTTTTAATTTTATTTTTTATAT  464

seq1  TTATTTGTTTGTTTGTTTGTTTGTTTGTTTTTGCCTGCTTGCACATCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGTTTGTTTGTTTGTTTGTTTTTGCCTGCTTGCACATCTGT  514

seq1  GCACTCTGTGTGTGCCTGATGGGTTTGGAAAGCCAAAGGAGAATATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTGTGTGTGCCTGATGGGTTTGGAAAGCCAAAGGAGAATATCAGA  564

seq1  TTCCCAGCTTGGAGTTAGCAGTGTGAGCAACGGTGTGGGTCCTGGGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCTTGGAGTTAGCAGTGTGAGCAACGGTGTGGGTCCTGGGAATC  614

seq1  AAACCCAAGGCCCAGGGAAGAACAGTCAGTTCTCTTAACCACTAAACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAAGGCCCAGGGAAGAACAGTCAGTTCTCTTAACCACTAAACCAT  664

seq1  CTCTGCAGTCTGTCTCGAGCTTTTTACCCAAGCCCTGGGCTCAGAGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGTCTGTCTCGAGCTTTTTACCCAAGCCCTGGGCTCAGAGAAGG  714

seq1  TCAGCGGCTAGACTTTAAATCCTGATGACCTTGACCTCAAGCCAGGCGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGCTAGACTTTAAATCCTGATGACCTTGACCTCAAGCCAGGCGTT  764

seq1  TGTTTCCATGCACGTCTCTGCTTCTTTGTATTTCTCAGCTGAGTTCTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATGCACGTCTCTGCTTCTTTGTATTTCTCAGCTGAGTTCTGGA  814

seq1  AAAAGCTTTATCTGAAGGACAAACTGTGAACATTCTCAAAGACAGTTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTATCTGAAGGACAAACTGTGAACATTCTCAAAGACAGTTTCT  864

seq1  CCCTCAAAAGAAAAACCGCCTTTGAGTGCATTAGTCACATGACTTTCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAAGAAAAACCGCCTTTGAGTGCATTAGTCACATGACTTTCATG  914

seq1  CTAATGGGGACGTCCTTGATGTCAACGTTATCCAGGGCAGCCACAAATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGGGACGTCCTTGATGTCAACGTTATCCAGGGCAGCCACAAATCC  964

seq1  GACAGGAAGTCTGTGGGGACCATGTGAACAATGAGTCCTTGCTCTCTGAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAAGTCTGTGGGGACCATGTGAACAATGAGTCCTTGCTCTCTGAC  1014

seq1  CCTGGAGAGACTTGTCACATGTGTGTCCACTCAGCCGCACTTGGGTTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGACTTGTCACATGTGTGTCCACTCAGCCGCACTTGGGTTAAA  1064

seq1  AAGAATTC  1108
      ||||||||
seq2  AAGAATTC  1072