BAC Information

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BAC

Clone NameB6Ng01-141N24
Chromosome8 (Build37)
Map Location 113,959,903 - 114,131,453
singlet/doubletdoublet
Overlap geneWdr59, Znrf1
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h
Downstream geneLdhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N24.bB6Ng01-141N24.g
ACCDH940218DH940219
length1,0241,034
definitionDH940218|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N24, 5' end.DH940219|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,959,903 - 113,960,936)(114,130,400 - 114,131,453)
sequence
gaattccaatccacacaactgtgaactaggattcctaacagctaatccat
ctgtccaacactatatgttcttgacaacatggaaagaaaagaatacattt
gtttacatatattgaaggtgatagactcaatgtaaaaatgaatcctttat
ttatgaagtcatgaaggtacagaaattcatgccagtctctttaattcttt
cagaaacaagggcttgctgtgtaaccttgtgtcgcgcccgctctcgacca
gcaagaatgacgcgaccaccagtccttctaacagcagtttattcagtcct
gattcttcttgtttatatctcccccgaaccctgggcctctcactcctttt
atactctctctcatccacatactgcaggccacgcccccttgccagtcaca
aggcttcagctaatcagggcagcaggggcaaatctccaccaaattggatt
cacctgtatcctggtacacctgcgcagcactcaagatgtttgtgtcttat
atgaggaagtcaggtgcaagtcatatgacttagctgcagtccctggcgcc
tttgggactgccgccacaccagctccccacaaccttgggtgactttgaac
tcacattggccctcttgcctcagcctctcaagtgctaacatcacagacaa
gcagcgccacgcctgaccttgtgccagctttcttcagcacctcaggattt
acccagctagcccaaagtggcactcccttgccaaccatgcttggcctgca
ttcagaattagcacctacatttgctcttttctcttggtgactccttggta
cggtcctgacctctggtcccctgtaactccctaaaacaacaaagacacaa
ggtcattgtgggtggcatactttttaaaacattgacaggaaagggtaaaa
ataggggaaggtagcagggacacttcagattaatgagatgactgcctttc
tcgtctcttcaaatccatggccctttcacactgactgatatgctgcatgt
atggtatgcatatacatattattc
gaattcactgcatgcttgcaaagactgaatgagacgacatcatcacgagg
tctacagcagcgattgaggaggaaggatgagaactaaggagacgaactcg
cagaccaaggagggcacgggtactttccacactgccaatgtggaaacagg
tctctacttgcaatggtaacaggtaaacggtattttacacctacggagtc
atttctatagacagctgctgtcttccatggctgcttctttataacacggt
gtaaggactatcaagaggcaggcagtacactgactctacttcacagaaac
agtgaaaagcccaagtaacttgttcaacatgcactgcgccggaaagagac
agagctgacccccagccagcttgacctcgagccagctgctgctgtggcct
ctggctgacaaacgcaggagaaggggtcagcggcaagcacaacacagaca
caggtcttcaagtcacttccgactttctgccctgcccacacccacggttc
cagataatccctaaacatggatgacactttttctaggaatttgttactat
agaagatctgaatccagaatcagcacagtcctcttggcatggggcccaca
gcactgctatacgatgctggcttattacgtttcaaacggaagtaaaggca
cagtgagagggacagaaaaactggagagctaaaggggaaaggctaatgtc
cccaccttctttcccgaaaggtcatccgatgagcaagacggactctacct
ctttaccgccccaatcttttcttgtatcttttcagtcttgattcacacca
acagccctatgggatgacaatactgatatttatgaactatctaaaggtaa
aacttgttgaaatctttatccattttggaggagtctgtactgaatggacc
tcgccttgcacccgaagtctcgaggtggccagccatgactttctcagcct
ctcagagctgcagcactgtctcagcactgcttcagggcagctttattttt
ccagtggtctctttcagaatctctgattctggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_113959903_113960936
seq2: B6Ng01-141N24.b_45_1068

seq1  GAATTCCAATCCACACAACTGTGAACTAGGATTCCTAACAGCTAATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCCACACAACTGTGAACTAGGATTCCTAACAGCTAATCCAT  50

seq1  CTGTCCAACACTATATGTTCTTGACAACATGGAAAGAAAAGAATACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAACACTATATGTTCTTGACAACATGGAAAGAAAAGAATACATTT  100

seq1  GTTTACATATATTGAAGGTGATAGACTCAATGTAAAAATGAATCCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATATATTGAAGGTGATAGACTCAATGTAAAAATGAATCCTTTAT  150

seq1  TTATGAAGTCATGAAGGTACAGAAATTCATGCCAGTCTCTTTAATTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTCATGAAGGTACAGAAATTCATGCCAGTCTCTTTAATTCTTT  200

seq1  CAGAAACAAGGGCTTGCTGTGTAACCTTGTGTCGCGCCCGCTCTCGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAGGGCTTGCTGTGTAACCTTGTGTCGCGCCCGCTCTCGACCA  250

seq1  GCAAGAATGACGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGACGCGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTCCT  300

seq1  GATTCTTCTTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCTTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCCTTTT  350

seq1  ATACTCTCTCTCATCCACATACTGCAGGCCACGCCCCCTTGCCAGTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTCTCTCATCCACATACTGCAGGCCACGCCCCCTTGCCAGTCACA  400

seq1  AGGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGCTAATCAGGGCAGCAGGGGCAAATCTCCACCAAATTGGATT  450

seq1  CACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTATCCTGGTACACCTGCGCAGCACTCAAGATGTTTGTGTCTTAT  500

seq1  ATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAGTCAGGTGCAAGTCATATGACTTAGCTGCAGTCCCTGGCGCC  550

seq1  TTTGGGACTGCCGCCACACCAGCTCCCCACAACCTTGGGTGACTTTGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGACTGCCGCCACACCAGCTCCCCACAACCTTGGGTGACTTTGAAC  600

seq1  TCACATTGGCCCTCTTGCCTCAGCCTCTCAAGTGCTAACATCACAGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTGGCCCTCTTGCCTCAGCCTCTCAAGTGCTAACATCACAGACAA  650

seq1  GCAGCGCCACGCCTGACCTTGTGCCAGCTTTCTTCAGCACCTCAGGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGCCACGCCTGACCTTGTGCCAGCTTTCTTCAGCACCTCAGGATTT  700

seq1  ACCCAGCTAGCCCAAAGTGGCACTCCCTTGCCAACCATGCTTGGCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTAGCCCAAAGTGGCACTCCCTTGCCAACCATGCTTGGCCTGCA  750

seq1  TTCAGAATTAGCACCTACATTTGCTCTTTTCTCTTGGTGACTCCTTGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATTAGCACCTACATTTGCTCTTTTCTCTTGGTGACTCCTTGGTA  800

seq1  CGGTCCTGACCTCTGGTCCCCTGTAACTCCCTAAAACAACAAAGACACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCCTGACCTCTGGTCCCCTGTAACTCCCTAAAACAACAAAGACACAA  850

seq1  GGTCATTGTGGGTGGCATACTTTTTAAAACATTGACAGGAAAGGGTAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTGTGGGTGGCATACTTTTTAAAACATTGACAGGAAAGGGTAAAA  900

seq1  ATAGGGGAAGGTAGCAGGGAACACTTCAGATTTAATGGAGATGACTGCCT  950
      ||||||||||||||||||| |||||||||| ||||| |||||||||||||
seq2  ATAGGGGAAGGTAGCAGGG-ACACTTCAGA-TTAAT-GAGATGACTGCCT  947

seq1  TTCTCCGTCTCCTTCAAATCCATGGCCCTTTCCACACTGACTGATATTGC  1000
      |||| ||||| |||||||||||||||||||| |||||||||||||| |||
seq2  TTCT-CGTCT-CTTCAAATCCATGGCCCTTT-CACACTGACTGATA-TGC  993

seq1  TTGCATGTATGGATATGCATATACATATTTATTC  1034
       ||||||||||| |||||||||||||| ||||||
seq2  -TGCATGTATGG-TATGCATATACATA-TTATTC  1024

seq1: chr8_114130400_114131453
seq2: B6Ng01-141N24.g_68_1101 (reverse)

seq1  CTCCAGAATCAAGGAGCATCTTGAAGAGACCACCTGGGAAAATAAAGCTG  50
      |||||||||||  |||  |||  ||||||||| |||| ||||||||||||
seq2  CTCCAGAATCA--GAGATTCTGAAAGAGACCA-CTGGAAAAATAAAGCTG  47

seq1  CCACTGGAACAGTGCTGAGGACAGTGCTGAGGCTCTGAGGAGGCCTGAGA  100
      || ||| | ||||||||| ||||||||||  ||||||| |||| ||||||
seq2  CC-CTGAAGCAGTGCTGA-GACAGTGCTGCAGCTCTGA-GAGG-CTGAGA  93

seq1  AAGTCATGGCCTGGCCACCTCTGCAGACTTCTGGTGTGCAAGGCCGAGTT  150
      ||||||||| |||||||||||   |||||||  | |||||||| |||| |
seq2  AAGTCATGG-CTGGCCACCTC--GAGACTTC--GGGTGCAAGG-CGAGGT  137

seq1  CCATTCAGTACAGACTTCCTTCCAAAATGGGATAAAGATTTTCAACAAGT  200
      ||||||||||||||||  | |||||||| ||||||||| |||||||||||
seq2  CCATTCAGTACAGACT--CCTCCAAAAT-GGATAAAGA-TTTCAACAAGT  183

seq1  TTTAACCTTTAGATAGTTCATAAATATCAGTATTTGTCATTCCATAGGGC  250
      ||| |||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TTT-ACCTTTAGATAGTTCATAAATATCAGTA-TTGTCATCCCATAGGGC  231

seq1  TGTTGGTGCTGAATCAAGACTGGAAAGATACAAGAAAAGATTGGGGCGGT  300
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  TGTTGGTG-TGAATCAAGACTGAAAAGATACAAGAAAAGATTGGGGCGGT  280

seq1  AAAGAGGTAGAGTCCGTCTTGCTCATCGGATGACCTTTCGGGAAAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTAGAGTCCGTCTTGCTCATCGGATGACCTTTCGGGAAAGAAGG  330

seq1  TGGGGACATTAGCCTTTCCCCTTTAGCTCTCCAGTTTTTCTGTCCCGCTC  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGGGGACATTAGCCTTTCCCCTTTAGCTCTCCAGTTTTTCTGTCCCTCTC  380

seq1  ACTGTGCCTTTACTTCCGTTTGAAAGGTAATAAGCCAGCATCGTATAGCA  450
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTGTGCCTTTACTTCCGTTTGAAACGTAATAAGCCAGCATCGTATAGCA  430

seq1  GTGCTGTGGGCCCCATGCCAAGAGGACTGTGCTGATTCTGGATTCAGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGGGCCCCATGCCAAGAGGACTGTGCTGATTCTGGATTCAGATC  480

seq1  TTCTATAGTAACAAATTCCTAGAAAAAGTGTCATCCATGTTTAGGGATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGTAACAAATTCCTAGAAAAAGTGTCATCCATGTTTAGGGATTA  530

seq1  TCTGGAACCGTGGGTGTGGGCAGGGCAGAAAGTCGGAAGTGACTTGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCGTGGGTGTGGGCAGGGCAGAAAGTCGGAAGTGACTTGAAGA  580

seq1  CCTGTGTCTGTGTTGTGCTTGCCGCTGACCCCTTCTCCTGCGCTTGTCAG  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTGTGTCTGTGTTGTGCTTGCCGCTGACCCCTTCTCCTGCGTTTGTCAG  630

seq1  CCAGAGGCCACAGCAGCAGCTGGCTCGAGGTCAAGCTGGCTGGGGGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGCCACAGCAGCAGCTGGCTCGAGGTCAAGCTGGCTGGGGGTCAG  680

seq1  CTCTGTCTCTTTCCGGCGCAGTGCATGTTGAACAAGTTACTTGGGCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTTTCCGGCGCAGTGCATGTTGAACAAGTTACTTGGGCTTTT  730

seq1  CACTGTTTCTGTGAAGTAGAGTCAGTGTACTGCCTGCCTCTTGATAGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTCTGTGAAGTAGAGTCAGTGTACTGCCTGCCTCTTGATAGTCC  780

seq1  TTACACCGTGTTATAAAGAAGCAGCCATGGAAGACAGCAGCTGTCTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCGTGTTATAAAGAAGCAGCCATGGAAGACAGCAGCTGTCTATAG  830

seq1  AAATGACTCCGTAGGTGTAAAATACCGTTTACCTGTTACCATTGCAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTCCGTAGGTGTAAAATACCGTTTACCTGTTACCATTGCAAGTA  880

seq1  GAGACCTGTTTCCACATTGGCAGTGTGGAAAGTACCCGTGCCCTCCTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGTTTCCACATTGGCAGTGTGGAAAGTACCCGTGCCCTCCTTGG  930

seq1  TCTGCGAGTTCGTCTCCTTAGTTCTCATCCTTCCTCCTCAATCGCTGCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGAGTTCGTCTCCTTAGTTCTCATCCTTCCTCCTCAATCGCTGCTG  980

seq1  TAGACCTCGTGATGATGTCGTCTCATTCAGTCTTTGCAAGCATGCAGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCGTGATGATGTCGTCTCATTCAGTCTTTGCAAGCATGCAGTGA  1030

seq1  ATTC  1054
      ||||
seq2  ATTC  1034