BAC Information

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BAC

Clone NameB6Ng01-142C12
Chromosome8 (Build37)
Map Location 82,948,453 - 83,052,219
singlet/doubletdoublet
Overlap geneGypa
Upstream geneLOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneFrem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142C12.bB6Ng01-142C12.g
ACCDH940424DH940425
length1,2391,166
definitionDH940424|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C12, 5' end.DH940425|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,050,970 - 83,052,219)(82,948,453 - 82,949,628)
sequence
gaattcaatagattggaagtgggctttttttttcccagaaaatctctgac
aataataagagggaacattgaaaaacaacaccccagaatttccataaact
atttttaggtaaatacactatttggagttgtaaaagcttcacgtaggctc
ctttaggtgggctagtgaagtggctgcactctcctcttcagacagctgtg
ctctggggaatgattagtgtgtgacacggatagaaagagcgagcgtgggt
tgggagtgcatacatacatctgggctcaactcagctccgggatctgctgg
gtctggggatctgccaaggctttgtcttttactatttattgtaatgtaaa
gagctgccctctaagatttggagtctgcatgtagcatgagggaccccggc
ctcagttaattctgattggtaaataaaaatggcagcatccaatagctggg
gagaagagacataggcagggtttaagtttcctgggcaaagcaaagcaaaa
caaaacaaataaacaaaaaaaccaaagcagcattggaagggtaagaacat
tcagggggtgagagaaagaagtcatcatggggtagaatgtacaggaagga
gaaggagagcggccataaaaaagggccaaaacaatgtggcccagagggct
gctcagttgtgtcaagagcagccaagttggaacataggaattagtaagtg
gttactgggagttgtcggtaggaaagtagattctacagcatggagattag
gcagttgctcggctactgtgatgcataaggcatattaaaaaatataaagg
ctatgtgcgtgtctatgtgcgtatctgggaacataaatagtctaagggaa
ggaacccctgagacaggtttttctttttactgttttatgacaacatagag
ctgccattgaaaaagtcacttcaatgttcaaacctttggtgtcttcatta
gtaaattgggataacaattctgtgtcatttacatagttttcatccgcatt
gatcaggctgaataatatttgcaaagctctgtgacctggtgtgaatgcta
ctattattctgaagtgactatttataaagttagacaaaatagaattgcag
atgcccttaagagggttaggcagagttattctgcctggaacctccctcta
atgtagcacactttctgtcatgctcaataagtggcactagttctacattg
gaattgctctgttaaacggtaaatctgggggtcaggcac
gaattcaacacttttttccatagttaatagtacagatgaaaaaataaaga
aataaataagaaaggatattaaaggtgtaaaaactgcaacaaccaattta
acattactgatcagacaaaatcttccaaattatgaactagttggttatat
gatcttttcaagtgaatatgggatatttgagaaaatagaataaatgtggg
gtcataaatttgaaaaaatggatcaaaaggaaaatctgaaagtatatgaa
gctgaattaacatataccagaatgtatagctgcttttaaaacaggatgac
agggaaactggtaccattagtcctcattagagttgaagtaccaaagtagt
gattgaagctgttaccttaggaaactggagacagatggcactcagggcag
acgtaataaaaggaatgctaaaaatagagatgtgtttatcaaagaaatag
aaacgaaagaagtggcgacaataaaaactagtaatttgggagaaaattgt
acatacagaaaacaaagatgcatggtattaaaaggtgtgcattaccctta
aagtggataatgtacaatctgtaatggaagacatgttcaagaatatcaca
gaaaaacagcatctgccaccatgaaaaggatgttatttggagcaatactg
aactacctatatacagctctcagtgcagctaaaatcatgaggaaactggt
gcagaagaactcaccaaatcctcatgtactgatagtgagagcaaactgat
acatccattccattcgacagcttctcacaaagtgaaaacacacttcacat
atggccaagcaagcattactctttgtatcttttcaaaagaagtgaaatct
tcatgtttaaattaaaaaataaaaataaaaactatgtatgcacatccatg
ccgctgaatttgtaaacacagaaatgtagagatactccagaatccttcag
tgggtgatgacccagacagcggcatttgtgagcagtaggagcgctgtgtg
aagaagagtctctggaggtgcactctgcaatcacttacacagcacatatt
tatccataagaacagaactgctgtcagaaccagatccatgttgctatgga
atgaaggtaggtggtattgacacaaaagcatagggtggaattaggaatca
gagtgtcctggtatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83050970_83052219
seq2: B6Ng01-142C12.b_49_1287 (reverse)

seq1  GTGCCTGAACCCCAGATTTTACGGTCTACC--AGCAATCCAATATGTATG  48
      |||||||| ||||||| ||||| || || |  |||||| | | ||||| |
seq2  GTGCCTGACCCCCAGA-TTTACCGTTTAACAGAGCAATTCCA-ATGTA-G  47

seq1  GACTAGTGGCCACTTATTGAGCATGACAGAAATGTTGGCTACATGA-AGG  97
       |||||| |||||||||||||||||||||||| ||  ||||||| | |||
seq2  AACTAGT-GCCACTTATTGAGCATGACAGAAA-GTGTGCTACATTAGAGG  95

seq1  GAGGTGCCCCAGCAGAATTA-TCTGGCCCTAACACTCTT-AGGGCATTCT  145
      |||||  ||  ||||||| | ||||  |||||| ||||| |||||||   
seq2  GAGGT-TCCAGGCAGAATAACTCTG--CCTAACCCTCTTAAGGGCAT--C  140

seq1  TGCATTTTTCTAATTTTGTCTAACTTTAT-AATAGTCACCTTCAGAATAA  194
      |||| || |   ||||||||||||||||| |||||||| |||||||||||
seq2  TGCAATTCT---ATTTTGTCTAACTTTATAAATAGTCA-CTTCAGAATAA  186

seq1  TAGGTAGCATTCACACCAGGTCACAGAGCTTTGCAAATATTATTTCAGCC  244
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TA-GTAGCATTCACACCAGGTCACAGAGCTTTGCAAATATTA-TTCAGCC  234

seq1  TGATCAATGCGGATGAAAACTATGTAAATGACACAGAATTGTTATCCCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATGCGGATGAAAACTATGTAAATGACACAGAATTGTTATCCCAA  284

seq1  TTTTACTAATGAAGACACCAAAGGTTTGAACATTGAAGTGACTTTTTCAA  344
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTACTAATGAAGACACCAAAGGTTTGAACATTGAAGTGACTTTTTCAA  333

seq1  TGGCAGCTCTATGTTGTCATAAAACAGTAAAAAGAAAAACCTGTCTCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCTCTATGTTGTCATAAAACAGTAAAAAGAAAAACCTGTCTCAGG  383

seq1  GGTTCCTTCCCTTAGACTATTTATGTTCCCAGATACGCACATAGACACGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCCCTTAGACTATTTATGTTCCCAGATACGCACATAGACACGC  433

seq1  ACATAGCCTTTATATTTTTTAATATGCCTTATGCATCACAGTAGCCGAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCCTTTATATTTTTTAATATGCCTTATGCATCACAGTAGCCGAGC  483

seq1  AACTGCCTAATCTCCATGCTGTAGAATCTACTTTCCTACCGACAACTCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCTAATCTCCATGCTGTAGAATCTACTTTCCTACCGACAACTCCC  533

seq1  AGTAACCACTTACTAATTCCTATGTTCCAACTTGGCTGCTCTTGACACAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCACTTACTAATTCCTATGTTCCAACTTGGCTGCTCTTGACACAA  583

seq1  CTGAGCAGCCCTCTGGGCCACATTGTTTTGGCCCTTTTTTATGGCCGCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCCCTCTGGGCCACATTGTTTTGGCCCTTTTTTATGGCCGCTC  633

seq1  TCCTTCTCCTTCCTGTACATTCTACCCCATGATGACTTCTTTCTCTCACC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTTCCTGTACATTCTACCCCATGATGACTTCTTTCTCTCACC  683

seq1  CCCTGAATGTTCTTACCCTTCCAATGCTGCTTTGGTTTTTTTGTTTATTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAATGTTCTTACCCTTCCAATGCTGCTTTGGTTTTTTTGTTTATTT  733

seq1  GTTTTGTTTTGCTTTGCTTTGCCCAGGAAACTTAAACCCTGCCTATGTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGCTTTGCTTTGCCCAGGAAACTTAAACCCTGCCTATGTCT  783

seq1  CTTCTCCCCAGCTATTGGATGCTGCCATTTTTATTTACCAATCAGAATTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCAGCTATTGGATGCTGCCATTTTTATTTACCAATCAGAATTA  833

seq1  ACTGAGGCCGGGGTCCCTCATGCTACATGCAGACTCCAAATCTTAGAGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCCGGGGTCCCTCATGCTACATGCAGACTCCAAATCTTAGAGGG  883

seq1  CAGCTCTTTACATTACAATAAATAGTAAAAGACAAAGCCTTGGCAGATCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTTACATTACAATAAATAGTAAAAGACAAAGCCTTGGCAGATCC  933

seq1  CCAGACCCAGCAGATCCCGGAGCTGAGTTGAGCCCAGATGTATGTATGCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCAGCAGATCCCGGAGCTGAGTTGAGCCCAGATGTATGTATGCA  983

seq1  CTCCCAACCCACGCTCGCTCTTTCTATCCGTGTCACACACTAATCATTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACCCACGCTCGCTCTTTCTATCCGTGTCACACACTAATCATTCC  1033

seq1  CCAGAGCACAGCTGTCTGAAGAGGAGAGTGCAGCCACTTCACTAGCCCAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCACAGCTGTCTGAAGAGGAGAGTGCAGCCACTTCACTAGCCCAC  1083

seq1  CTAAAGGAGCCTACGTGAAGCTTTTACAACTCCAAATAGTGTATTTACCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGCCTACGTGAAGCTTTTACAACTCCAAATAGTGTATTTACCT  1133

seq1  AAAAATAGTTTATGGAAATTCTGGGGTGTTGTTTTTCAATGTTCCCTCTT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTTTATGGAAATTCTGGGGTGTTGTTTTTCAATGTTCCCTCTT  1183

seq1  ATTATTGTCAGAGATTTTCTGGGAAAAAAAAAGCCCACTTCCAATCTATT  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTCAGAGATTTTCTGGGAAAAAAAAAGCCCACTTCCAATCTATT  1233

seq1  GAATTC  1250
      ||||||
seq2  GAATTC  1239

seq1: chr8_82948453_82949628
seq2: B6Ng01-142C12.g_69_1234

seq1  GAATTCAACACTTTTTTCCATAGTTAATAGTACAGATGAAAAAATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTTTTTTCCATAGTTAATAGTACAGATGAAAAAATAAAGA  50

seq1  AATAAATAAGAAAGGATATTAAAGGTGTAAAAACTGCAACAACCAATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAGAAAGGATATTAAAGGTGTAAAAACTGCAACAACCAATTTA  100

seq1  ACATTACTGATCAGACAAAATCTTCCAAATTATGAACTAGTTGGTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTGATCAGACAAAATCTTCCAAATTATGAACTAGTTGGTTATAT  150

seq1  GATCTTTTCAAGTGAATATGGGATATTTGAGAAAATAGAATAAATGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTTCAAGTGAATATGGGATATTTGAGAAAATAGAATAAATGTGGG  200

seq1  GTCATAAATTTGAAAAAATGGATCAAAAGGAAAATCTGAAAGTATATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAATTTGAAAAAATGGATCAAAAGGAAAATCTGAAAGTATATGAA  250

seq1  GCTGAATTAACATATACCAGAATGTATAGCTGCTTTTAAAACAGGATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATTAACATATACCAGAATGTATAGCTGCTTTTAAAACAGGATGAC  300

seq1  AGGGAAACTGGTACCATTAGTCCTCATTAGAGTTGAAGTACCAAAGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACTGGTACCATTAGTCCTCATTAGAGTTGAAGTACCAAAGTAGT  350

seq1  GATTGAAGCTGTTACCTTAGGAAACTGGAGACAGATGGCACTCAGGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAGCTGTTACCTTAGGAAACTGGAGACAGATGGCACTCAGGGCAG  400

seq1  ACGTAATAAAAGGAATGCTAAAAATAGAGATGTGTTTATCAAAGAAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAATAAAAGGAATGCTAAAAATAGAGATGTGTTTATCAAAGAAATAG  450

seq1  AAACGAAAGAAGTGGCGACAATAAAAACTAGTAATTTGGGAGAAAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAAGAAGTGGCGACAATAAAAACTAGTAATTTGGGAGAAAATTGT  500

seq1  ACATACAGAAAACAAAGATGCATGGTATTAAAAGGTGTGCATTACCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGAAAACAAAGATGCATGGTATTAAAAGGTGTGCATTACCCTTA  550

seq1  AAGTGGATAATGTACAATCTGTAATGGAAGACATGTTCAAGAATATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATAATGTACAATCTGTAATGGAAGACATGTTCAAGAATATCACA  600

seq1  GAAAAACAGCATCTGCCACCATGAAAAGGATGTTATTTGGAGCAATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAGCATCTGCCACCATGAAAAGGATGTTATTTGGAGCAATACTG  650

seq1  AACTACCTATATACAGCTCTCAGTGCAGCTAAAATCATGAGGAAACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCTATATACAGCTCTCAGTGCAGCTAAAATCATGAGGAAACTGGT  700

seq1  GCAGAAGAACTCACCAAATCCTCATGTACTGATAGTGAGAGCAAACTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAACTCACCAAATCCTCATGTACTGATAGTGAGAGCAAACTGAT  750

seq1  ACATCCATTCCATTCGACAGCTTCTCACAAAGTGAAAACACACTTCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATTCCATTCGACAGCTTCTCACAAAGTGAAAACACACTTCACAT  800

seq1  ATGGCCAAGCAAGCATTACTCTTTGTATCTTTTCAAAAGAAGTGAAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAGCAAGCATTACTCTTTGTATCTTTTCAAAAGAAGTGAAATCT  850

seq1  TCATGTTTAAATTAAAAAATAAAAATAAAAACTATGTATGCACATCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTAAATTAAAAAATAAAAATAAAAACTATGTATGCACATCCATG  900

seq1  CCGCTGAATTTGTAAACACAGAAATGTAGAGATACTCCAAGAATCCTTCA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCGCTGAATTTGTAAACACAGAAATGTAGAGATACTCC-AGAATCCTTCA  949

seq1  GTGGGTGAATGACCCAGAACAGCGGCATTTGTGAGCAGTAGGAAGCGGCT  1000
      ||||||| ||||||||| |||||||||||||||||||||||| ||| |||
seq2  GTGGGTG-ATGACCCAG-ACAGCGGCATTTGTGAGCAGTAGG-AGC-GCT  995

seq1  GTGTGGAAGACAGAGTCTCT-GAGGTGCACTCTGCCATTCACTTACACAG  1049
      |||| ||||| ||||||||| ||||||||||||| || ||||||||||||
seq2  GTGT-GAAGA-AGAGTCTCTGGAGGTGCACTCTG-CAATCACTTACACAG  1042

seq1  CACATA-TTATCCATAAG-ACAGAACTGCCTGTCAGAACACAGATCCATG  1097
      |||||| ||||||||||| ||||||||| |||||||||| ||||||||| 
seq2  CACATATTTATCCATAAGAACAGAACTG-CTGTCAGAAC-CAGATCCAT-  1089

seq1  GTTGCTATGGAATG-AGGTAGGTGGGTATGACACAAAAGCATAGGTGTGG  1146
      |||||||||||||| ||||||||||   ||||||||||||||||| ||||
seq2  GTTGCTATGGAATGAAGGTAGGTGGTATTGACACAAAAGCATAGG-GTGG  1138

seq1  AATATTAGGAATCAGAAGTGTCCT-GTATCC  1176
      |  |||||||||||| |||||||| ||||||
seq2  A--ATTAGGAATCAG-AGTGTCCTGGTATCC  1166