BAC Information

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BAC

Clone NameB6Ng01-142F19
Chromosome8 (Build37)
Map Location 24,170,872 - 24,304,347
singlet/doubletdoublet
Overlap geneAnk1, Nkx6-3, Agpat6
Upstream geneAlg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253
Downstream geneGins4, Golga7, Sfrp1, LOC100040931, Zmat4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F19.bB6Ng01-142F19.g
ACCDH940578DH940579
length182358
definitionDH940578|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F19, 5' end.DH940579|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,304,166 - 24,304,347)(24,170,872 - 24,171,229)
sequence
tcagatgattgtgatacaaagaaaaatgttcaaaactttgacgtgtgggg
tcaaatctgatatgtgacagtcatgctgggcccgtggaactggaggtaac
cttggccagtgggacagagggctcttgctgcatcttctcatgggattgct
ggtcaaggggaacggggtgggggtggggggat
ttgggaggagcaaattaatcgattgatgttgagcgcttgaaaggtaacgt
gagctctgaacttgtattgaaaggaagttcagagatagcacatggattaa
atggaagggatatgggccgaacacataagaaaatgtatgctctattccaa
cacatatgtgtgcacatgtgtacacacacacacataggcatgtatgtaca
tacacacacaaagatacaaagattcatgggagtgcacgtgagcatactca
cagacacacacacacaaagcacagaggctggggaggagaggagggagata
aagacatgaagaagggacaaagacactgtagcctgaatggggagggatgg
ggtgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_24304166_24304347
seq2: B6Ng01-142F19.b_50_231 (reverse)

seq1  ATCCCCCCACCCCCACCCCGTTCCCCTTGACCAGCAATCCCATGAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCCACCCCCACCCCGTTCCCCTTGACCAGCAATCCCATGAGAAGA  50

seq1  TGCAGCAAGAGCCCTCTGTCCCACTGGCCAAGGTTACCTCCAGTTCCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAGAGCCCTCTGTCCCACTGGCCAAGGTTACCTCCAGTTCCACG  100

seq1  GGCCCAGCATGACTGTCACATATCAGATTTGACCCCACACGTCAAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCATGACTGTCACATATCAGATTTGACCCCACACGTCAAAGTTT  150

seq1  TGAACATTTTTCTTTGTATCACAATCATCTGA  182
      ||||||||||||||||||||||||||||||||
seq2  TGAACATTTTTCTTTGTATCACAATCATCTGA  182

seq1: chr8_24170872_24171229
seq2: B6Ng01-142F19.g_72_429

seq1  TTGGGAGGAGCAAATTAATCGATTGATGTTGAGCGCTTGAAAGGTAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGAGCAAATTAATCGATTGATGTTGAGCGCTTGAAAGGTAACGT  50

seq1  GAGCTCTGAACTTGTATTGAAAGGAAGTTCAGAGATAGCACATGGATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGAACTTGTATTGAAAGGAAGTTCAGAGATAGCACATGGATTAA  100

seq1  ATGGAAGGGATATGGGCCGAACACATAAGAAAATGTATGCTCTATTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGGATATGGGCCGAACACATAAGAAAATGTATGCTCTATTCCAA  150

seq1  CACATATGTGTGCACATGTGTACACACACACACATAGGCATGTATGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGTGTGCACATGTGTACACACACACACATAGGCATGTATGTACA  200

seq1  TACACACACAAAGATACAAAGATTCATGGGAGTGCACGTGAGCATACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACAAAGATACAAAGATTCATGGGAGTGCACGTGAGCATACTCA  250

seq1  CAGACACACACACACAAAGCACAGAGGCTGGGGAGGAGAGGAGGGAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACACAAAGCACAGAGGCTGGGGAGGAGAGGAGGGAGATA  300

seq1  AAGACATGAAGAAGGGACAAAGACACTGTAGCCTGAATGGGGAGGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGAAGAAGGGACAAAGACACTGTAGCCTGAATGGGGAGGGATGG  350

seq1  GGTGGGGA  358
      ||||||||
seq2  GGTGGGGA  358