BAC Information

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BAC

Clone NameB6Ng01-142K23
Chromosome8 (Build37)
Map Location 16,250,653 - 16,404,599
singlet/doubletdoublet
Overlap geneCsmd1
Upstream geneEG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K23.bB6Ng01-142K23.g
ACCDH940817DH940818
length548735
definitionDH940817|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K23, 5' end.DH940818|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,404,033 - 16,404,599)(16,250,653 - 16,251,386)
sequence
gaattcatgaatatcagaggctaccacccttggctgtgttgttcgcctgc
actctccttgtgggtctgacatgctcccacaggtcagtgcagggcacaag
ccatcttcaggtcctgaagtacatacttgagaggctggcaagggtctgaa
gaggctattgacaggtcactctcaaggctcttgtgcaatgtaccttggtg
ttaattctgttaagcataaccgttcagggattttacatttgagggcagtt
attttctcttttcctttgaacagtaaagaaatattgttgtttaatttgaa
gtgtacataaggaaaatatgtctctttgggaatttcttgccagagtgatt
tgtcagcaggaagggtaactattactaggatgtcatttatcaaggaccct
gcttacccctggccctgacagctaggcagaccaggaggaattatgtaagc
agatccaaggttcctagggggccaggcagccctctttgtatattgtcact
ctctccatttccttatgatctcatatgattaaggatatatgaattaaa
gaattcttaggagcaggccaatcctcactgaacacaaggatagaatccct
ggaaagagcagaagtgacaaaatcctgccttcctatttactggtatttaa
atgggaatatttcagactagatagatgtacaggcttttgaagaaacacct
tctgacaagtttcaagtggtttaaggtgacacaaagatgctctgaggact
tggaaattaaaatgtcacaaaggcatgaattcagctgtcaaatcttgtct
cattgtatgaccttaaccatgtgtagtttgttgtgtatcaagtattttta
aatgtaattgttctgatggattttcagtgtaaggttgactaggagatgaa
gtatgtgagattttacttatttactttctataatttacagtttatatctt
gtatagaatgaattagtagtggtatagatcctcaatgtatagcgagtttt
ctcacaggaatcctggctgaatcatagttttcatttatttatagggatac
atacatagttatagatcagcgttccttgtttgagtctctctctctctctc
tctctctctctctctctctctctctctctctcccacttttctttttcccc
ttgcctttctacaataaaagctctaaaaccataaactgtctctgctcatc
aagggcatggtgttaccttacaacataaacaatagttactcccagatatt
tagggaagacaaatgccgaatcaagataaaatttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_16404033_16404599
seq2: B6Ng01-142K23.b_48_595 (reverse)

seq1  TTTAACTTTCATATTATTCCTTAACTACAATATTGAGAATCATAAAGGAA  50
      |||||  |||||||   |||||||  | |    |||| ||||| ||||||
seq2  TTTAA--TTCATAT--ATCCTTAATCATA----TGAG-ATCAT-AAGGAA  40

seq1  AATGAGAGAGAAGTGACAATATAACAAAGAGGGACTGCCTGGCCACACTA  100
      |  |||||   ||||||||||| |||||||||| |||||||||| | |||
seq2  ATGGAGAG---AGTGACAATAT-ACAAAGAGGG-CTGCCTGGCC-CCCTA  84

seq1  GGAACCTTGGATCCTGCTTACATAATTGCCTCCTGGTTCTGCCTAGCTGT  150
      |||||||||||| |||||||||||||| |||||||| |||||||||||||
seq2  GGAACCTTGGAT-CTGCTTACATAATT-CCTCCTGG-TCTGCCTAGCTGT  131

seq1  CAGGGCCAGGGGTAAGCAGGGTCCTTGATAAATGACATCCTAGTAATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGGGGTAAGCAGGGTCCTTGATAAATGACATCCTAGTAATAGT  181

seq1  TACCCTTCCTGCTGACAAATCACTCTGGCAAGAAATTCCCAAAGAGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTTCCTGCTGACAAATCACTCTGGCAAGAAATTCCCAAAGAGACAT  231

seq1  ATTTTCCTTATGTACACTTCAAATTAAACAACAATATTTCTTTACTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTTATGTACACTTCAAATTAAACAACAATATTTCTTTACTGTTC  281

seq1  AAAGGAAAAGAGAAAATAACTGCCCTCAAATGTAAAATCCCTGAACGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGAGAAAATAACTGCCCTCAAATGTAAAATCCCTGAACGGTT  331

seq1  ATGCTTAACAGAATTAACACCAAGGTACATTGCACAAGAGCCTTGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAACAGAATTAACACCAAGGTACATTGCACAAGAGCCTTGAGAGT  381

seq1  GACCTGTCAATAGCCTCTTCAGACCCTTGCCAGCCTCTCAAGTATGTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGTCAATAGCCTCTTCAGACCCTTGCCAGCCTCTCAAGTATGTACT  431

seq1  TCAGGACCTGAAGATGGCTTGTGCCCTGCACTGACCTGTGGGAGCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTGAAGATGGCTTGTGCCCTGCACTGACCTGTGGGAGCATGTC  481

seq1  AGACCCACAAGGAGAGTGCAGGCGAACAACACAGCCAAGGGTGGTAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACAAGGAGAGTGCAGGCGAACAACACAGCCAAGGGTGGTAGCCT  531

seq1  CTGATATTCATGAATTC  567
      |||||||||||||||||
seq2  CTGATATTCATGAATTC  548

seq1: chr8_16250653_16251386
seq2: B6Ng01-142K23.g_68_802

seq1  GAATTCTTAGGAGCAGGCCAATCCTCACTGAACACAAGGATAGAATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAGCAGGCCAATCCTCACTGAACACAAGGATAGAATCCCT  50

seq1  GGAAAGAGCAGAAGTGACAAAATCCTGCCTTCCTATTTACTGGTATTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAGCAGAAGTGACAAAATCCTGCCTTCCTATTTACTGGTATTTAA  100

seq1  ATGGGAATATTTCAGACTAGATAGATGTACAGGCTTTTGAAGAAACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATATTTCAGACTAGATAGATGTACAGGCTTTTGAAGAAACACCT  150

seq1  TCTGACAAGTTTCAAGTGGTTTAAGGTGACACAAAGATGCTCTGAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAGTTTCAAGTGGTTTAAGGTGACACAAAGATGCTCTGAGGACT  200

seq1  TGGAAATTAAAATGTCACAAAGGCATGAATTCAGCTGTCAAATCTTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTAAAATGTCACAAAGGCATGAATTCAGCTGTCAAATCTTGTCT  250

seq1  CATTGTATGACCTTAACCATGTGTAGTTTGTTGTGTATCAAGTATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATGACCTTAACCATGTGTAGTTTGTTGTGTATCAAGTATTTTTA  300

seq1  AATGTAATTGTTCTGATGGATTTTCAGTGTAAGGTTGACTAGGAGATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATTGTTCTGATGGATTTTCAGTGTAAGGTTGACTAGGAGATGAA  350

seq1  GTATGTGAGATTTTACTTATTTACTTTCTATAATTTACAGTTTATATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGAGATTTTACTTATTTACTTTCTATAATTTACAGTTTATATCTT  400

seq1  GTATAGAATGAATTAGTAGTGGTATAGATCCTCAATGTATAGCGAGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAATGAATTAGTAGTGGTATAGATCCTCAATGTATAGCGAGTTTT  450

seq1  CTCACAGGAATCCTGGCTGAATCATAGTTTTCATTTATTTATAGGGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGAATCCTGGCTGAATCATAGTTTTCATTTATTTATAGGGATAC  500

seq1  ATACATAGTTATAGATCAGCGTTCCTTGTTTGAGTCTCTCTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGTTATAGATCAGCGTTCCTTGTTTGAGTCTCTCTCTCTCTCTC  550

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACTTTTCTTTTTCCCC  600
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCACTTTTCTTTTTCCCC  600

seq1  TTGCCTTTCTACAAT-AAAGCTCTAAAACCATAAACTGTCTCTGCTCATC  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCTACAATAAAAGCTCTAAAACCATAAACTGTCTCTGCTCATC  650

seq1  AAGGGCATGGTGTTACCTTACAACAATAACAATAGTTACTCCCAGATATT  699
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  AAGGGCATGGTGTTACCTTACAACATAAACAATAGTTACTCCCAGATATT  700

seq1  TAGGGAAGACAAATGCCGAATCAAGATAAAATTTG  734
      |||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGACAAATGCCGAATCAAGATAAAATTTG  735