BAC Information

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BAC

Clone NameB6Ng01-142M21
Chromosome8 (Build37)
Map Location 111,994,909 - 112,149,282
singlet/doubletdoublet
Overlap genePmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829
Downstream gene2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142M21.bB6Ng01-142M21.g
ACCDH940908DH940909
length916862
definitionDH940908|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M21, 5' end.DH940909|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,994,909 - 111,995,818)(112,148,427 - 112,149,282)
sequence
gaattcaacagtaacacttttaacttttaagggatgactttagatcacga
cgtggaaggaaacagctgaggatgtttgtcgactttctaggctggccttt
taaaaagctggaggggaaaaaggagcgagggagagaaggggggagagaga
gagatttctcttttctcttagggacctatgtagatatgcaacacaagggt
atatttttgcatgtgtgtatgtataaggtgtgtgtgtatgtgtgttcaca
catgtgctccctagtgtgtgtgcataagaacacatatactatgtgtggag
gcccaaagttgacggtggatatctttctcaagacctctctaccttaccct
ctggggcagggtctcttgtgaacctggagctctcggactccaccagtcca
gctagccaactctcccctatccctgacacgaggagtgatgagattacagg
cagctgccatacctgcctggcttttctctggcagtccaacttccacgtcc
tctaggaatcctaagtccagttctcacgcctccatggtaagcacttcacc
caccaacccatctcctcggcccccaagaatcattttcttcagataaacat
aaaatcctaaggtggttacctcaaggggagaggcaggggctggggaaagg
aggaagcgcatttagacgctaccattcatggtgacattttctgctccctg
tgaagttggcctctttcatgtctattgtttatgctaaaatagcatttgag
cacccccaccccttggatagactttggagttgacatgcagtaagtagcaa
tcctccatttctaaacacttcaatggtcccccaaggagcataaacagcat
gctaagccctaaacctcactagcagggtgtcagccactgagaacagaaca
cggtctctcttgctat
gaattctctaaacagctccaaaaatttatctctaaacacttctggatatt
cactctacatttctagtgtctctttatttaaggaagtgaatcaaactcca
ttcgtaggttaaggtactgcaggctggtccttccctggttggaggacaat
gtgggacaagtgtgaacctttagcttccatcaccatgggagtagagtaaa
tggggtgttttattttattttattttaaaattaattatttattattatat
gtaagtacactgtagctgtcctcagacacaccagaagagggtacagatgg
ttgtgagtcaccatgtgattgctgggatttgaactcaggacatttggaag
agcagtcagtgctcttaactgctgagccatctctccagccccaaataggc
tgttttaatgcgaaagtgccaggttgcatatgaagaaggtttgaactttt
tccagtgggagtggggaatgggattcttgccagtcaccttgcctcagtgg
ctttacctctggtacattggggcaggctagcacacgtccttcaccaccca
atggtgaatagatgagtcctaatcaaaatgtgccatcaagtactgcaata
ggcactcaacccactgggagagattgtctttgggctcagttcattttgct
ttttagtgtacagccctcctgggaggtaacagggtagccatctttctttt
taaaatcataaccctgggaatgttgtgatagaaggacacattgttactct
ttttcatgactatgtttttcaaaactgacgcctgaacctggggttcatgc
acacgctaggacagtggttttaccactcgccacatccccagacctgtaag
tgcttttcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_111994909_111995818
seq2: B6Ng01-142M21.b_48_963

seq1  GAATTCAACAGTAACACTTTTAACTTTTAAGGGATGACTTTAGATCACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTAACACTTTTAACTTTTAAGGGATGACTTTAGATCACGA  50

seq1  CGTGGAAGGAAACAGCTGAGGATGTTTGTCGACTTTCTAGGCTGGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAAGGAAACAGCTGAGGATGTTTGTCGACTTTCTAGGCTGGCCTTT  100

seq1  TAAAAAGCTGGAGGGGAAAAAGGAGCGAGGGAGAGAAGGGGGGAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCTGGAGGGGAAAAAGGAGCGAGGGAGAGAAGGGGGGAGAGAGA  150

seq1  GAGATTTCTCTTTTCTCTTAGGGACCTATGTAGATATGCAACACAAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCTCTTTTCTCTTAGGGACCTATGTAGATATGCAACACAAGGGT  200

seq1  ATATTTTTGCATGTGTGTATGTATAAGGTGTGTGTGTATGTGTGTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGCATGTGTGTATGTATAAGGTGTGTGTGTATGTGTGTTCACA  250

seq1  CATGTGCTCCCTAGTGTGTGTGCATAAGAACACATATACTATGTGTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTCCCTAGTGTGTGTGCATAAGAACACATATACTATGTGTGGAG  300

seq1  GCCCAAAGTTGACGGTGGATATCTTTCTCAAGACCTCTCTACCTTACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGTTGACGGTGGATATCTTTCTCAAGACCTCTCTACCTTACCCT  350

seq1  CTGGGGCAGGGTCTCTTGTGAACCTGGAGCTCTCGGACTCCACCAGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCAGGGTCTCTTGTGAACCTGGAGCTCTCGGACTCCACCAGTCCA  400

seq1  GCTAGCCAACTCTCCCCTATCCCTGACACGAGGAGTGATGAGATTACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAACTCTCCCCTATCCCTGACACGAGGAGTGATGAGATTACAGG  450

seq1  CAGCTGCCATACCTGCCTGGCTTTTCTCTGGCAGTCCAACTTCCACGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCATACCTGCCTGGCTTTTCTCTGGCAGTCCAACTTCCACGTCC  500

seq1  TCTAGGAATCCTAAGTCCAGTTCTCACGCCTCCATGGTAAGCACTTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATCCTAAGTCCAGTTCTCACGCCTCCATGGTAAGCACTTCACC  550

seq1  CACCAACCCATCTCCTCGGCCCCCAAGAATCATTTTCTTCAGATAAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCCATCTCCTCGGCCCCCAAGAATCATTTTCTTCAGATAAACAT  600

seq1  AAAATCCTAAGGTGGTTACCTCAAGGGGAGAGGCAGGGGCTGGGGAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAAGGTGGTTACCTCAAGGGGAGAGGCAGGGGCTGGGGAAAGG  650

seq1  AGGAAGCGCATTTAGACGCTACCA-TCATGGTGACA-TTTCTGCTCCCTG  698
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGGAAGCGCATTTAGACGCTACCATTCATGGTGACATTTTCTGCTCCCTG  700

seq1  TGAGGTTGGCCTCTTTCATGTCTA-TGTTTATGCTAAAA-AGCATTTGAG  746
      ||| |||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TGAAGTTGGCCTCTTTCATGTCTATTGTTTATGCTAAAATAGCATTTGAG  750

seq1  CACCCCAACCC--TGGATGGACTTTGGAG-TGACATGCAGTAGTTAGCAA  793
      |||||| ||||  ||||| |||||||||| ||||||||||||  ||||||
seq2  CACCCCCACCCCTTGGATAGACTTTGGAGTTGACATGCAGTAAGTAGCAA  800

seq1  TCCTCCATTTCTAAACACTTCAAATGGTCCCCCAAGGAGCATAAACAGCA  843
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCTCCATTTCTAAACACTTC-AATGGTCCCCCAAGGAGCATAAACAGCA  849

seq1  TGCTAAGCCCTAAACCTCACTAGCAGGGTGTCAGCCACTGAGAACAGAAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCCCTAAACCTCACTAGCAGGGTGTCAGCCACTGAGAACAGAAC  899

seq1  ACGGTCTCTCTTTCTAT  910
      |||||||||||| ||||
seq2  ACGGTCTCTCTTGCTAT  916

seq1: chr8_112148427_112149282
seq2: B6Ng01-142M21.g_68_929 (reverse)

seq1  CACTGAAAAAGCACTTACAGGTCTGGGGATGTGGCGAGTGGTAAAA-CAC  49
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  CACTG-AAAAGCACTTACAGGTCTGGGGATGTGGCGAGTGGTAAAACCAC  49

seq1  TGTCCTAGCGTGTGCATGAACCCCAGGTTCAGGCGTCAGTTTTGAAAAAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGCGTGTGCATGAACCCCAGGTTCAGGCGTCAGTTTTGAAAAAC  99

seq1  ATAGTCATG-AAAAGAGTA--CATGTGTCCTTCTATCACAACATTCCCAG  146
      ||||||||| |||||||||   ||||||||||||||||||||||||||||
seq2  ATAGTCATGAAAAAGAGTAACAATGTGTCCTTCTATCACAACATTCCCAG  149

seq1  GGTTATGATTTTAAAAAG-AAGATGGCTACCCTGTTACCTCCCAGGAGGG  195
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTTATGATTTTAAAAAGAAAGATGGCTACCCTGTTACCTCCCAGGAGGG  199

seq1  CTGTACACT-AAAAGCAAAATGAACTGAGCCC-AAGACAATCTCTCCCAG  243
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  CTGTACACTAAAAAGCAAAATGAACTGAGCCCAAAGACAATCTCTCCCAG  249

seq1  TGGGTTGAGTGCCTATTGCAGTACTTGATGGCACATTTTGATTAGGACTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGAGTGCCTATTGCAGTACTTGATGGCACATTTTGATTAGGACTC  299

seq1  ATCTATTCACCATTGGGTGGTGAAGGACGTGTGCTAGCCTGCCCCAATGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCACCATTGGGTGGTGAAGGACGTGTGCTAGCCTGCCCCAATGT  349

seq1  ACCAGAGGTAAAGCCACTGAGGCAAGGTGACTGGCAAGAATCCCATTCCC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGTAAAGCCACTGAGGCAAGGTGACTGGCAAGAATCCCATTCCC  399

seq1  CACTCCCACTGGAAAAAGTTCAAACCTTCTTCATATGCAACCTGGCACTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACTGGAAAAAGTTCAAACCTTCTTCATATGCAACCTGGCACTT  449

seq1  TCGCATTAAAACAGCCTATTTGGGGCTGGAGAGATGGCTCAGCAGTTAAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATTAAAACAGCCTATTTGGGGCTGGAGAGATGGCTCAGCAGTTAAG  499

seq1  AGCACTGACTGCTCTTCCAAATGTCCTGAGTTCAAATCCCAGCAATCACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGACTGCTCTTCCAAATGTCCTGAGTTCAAATCCCAGCAATCACA  549

seq1  TGGTGACTCACAACCATCTGTACCCTCTTCTGGTGTGTCTGAGGACAGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTCACAACCATCTGTACCCTCTTCTGGTGTGTCTGAGGACAGCT  599

seq1  ACAGTGTACTTACATATAATAATAAATAATTAATTTTAAAATAAAATAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTTACATATAATAATAAATAATTAATTTTAAAATAAAATAAA  649

seq1  ATAAAACACCCCATTTACTCTACTCCCATGGTGATGGAAGCTAAAGGTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACCCCATTTACTCTACTCCCATGGTGATGGAAGCTAAAGGTTC  699

seq1  ACACTTGTCCCACATTGTCCTCCAACCAGGGAAGGACCAGCCTGCAGTAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTCCCACATTGTCCTCCAACCAGGGAAGGACCAGCCTGCAGTAC  749

seq1  CTTAACCTACGAATGGAGTTTGATTCACTTCCTTAAATAAAGAGACACTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTACGAATGGAGTTTGATTCACTTCCTTAAATAAAGAGACACTA  799

seq1  GAAATGTAGAGTGAATATCCAGAAGTGTTTAGAGATAAATTTTTGGAGCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGAGTGAATATCCAGAAGTGTTTAGAGATAAATTTTTGGAGCT  849

seq1  GTTTAGAGAATTC  856
      |||||||||||||
seq2  GTTTAGAGAATTC  862