BAC Information

Click to search

BAC

Clone NameB6Ng01-143A18
Chromosome8 (Build37)2 (Build37)
Map Location 63,536,866 - 63,536,908113,549,343 - 113,550,185
singlet/doubletsingletsinglet
Overlap geneNek1
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik
Downstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A18.bB6Ng01-143A18.g
ACCDH941089DH941090
length942843
definitionDH941089|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A18, 5' end.DH941090|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,536,866 - 63,536,908)(113,549,343 - 113,550,185)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccatttttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtgagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaataaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctatggatggatcacagg
gaattccagcagtctgggccctgtaatgaggaactgcagtagggagccag
tgggactatctttctccacaccatgtggtaggttgatagaatcatgtaac
tggggattccacaggcaaacacagtagaaatacttgaatttctagggtat
ttagtacagttatactcgaatttccaatgcgaacttaagttatcaaatat
aatggatctacttttttccttaaacaacagaaagaaagactgcgtcagaa
ggaagccagcgtggccaccaactaagatgaaaacagaaggaagttacaat
atgaaagacagcacctcactgctcctgcagacacaagggccaccggggag
ttcctgaaagactagttagggacatttgctcatctccttctgaggccatc
tgcagaaagtcccctgtgccttctttgggaagtctcttgtcaatccacaa
gaacaatgcaaagttatgtttgggaacactacaggaatatgtaattgttt
cttgcagaagtcttaagtccacccaataataagatcagaagatatttaat
tcttttcacattttatttatttaaagtggaaattctaagccttccagtat
atacccttgtcatgagaaaagaggtacatggtgatccccaagagaactca
agccttattcctcacacactacagtttgtattgatcttaatttttatcct
gttatactgagatcctattgcattttcaccaaaaatattgaaacttacca
gaattgattttgaagaggtttaatactgtgtatctcccagactagcaaaa
tgatttttgaaggagaagaatgatggtggtgggtggtggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_63536866_63536908
seq2: B6Ng01-143A18.b_946_987 (reverse)

seq1  CCTGTGTTCCATCTTATAGATGACTGTGAGCATCCACTTCTGT  43
      |||||| ||||||  |||| |||||||||||||||||||||||
seq2  CCTGTGATCCATC-CATAGCTGACTGTGAGCATCCACTTCTGT  42

seq1: chr2_113549343_113550185
seq2: B6Ng01-143A18.g_65_907

seq1  GAATTCCAGCAGTCTGGGCCCTGTAATGAGGAACTGCAGTAGGGAGCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGTCTGGGCCCTGTAATGAGGAACTGCAGTAGGGAGCCAG  50

seq1  TGGGACTATCTTTCTCCACACCATGTGGTAGGTTGATAGAATCATGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTATCTTTCTCCACACCATGTGGTAGGTTGATAGAATCATGTAAC  100

seq1  TGGGGATTCCACAGGCAAACACAGTAGAAATACTTGAATTTCTAGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTCCACAGGCAAACACAGTAGAAATACTTGAATTTCTAGGGTAT  150

seq1  TTAGTACAGTTATACTCGAATTTCCAATGCGAACTTAAGTTATCAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAGTTATACTCGAATTTCCAATGCGAACTTAAGTTATCAAATAT  200

seq1  AATGGATCTACTTTTTTCCTTAAACAACAGAAAGAAAGACTGCGTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCTACTTTTTTCCTTAAACAACAGAAAGAAAGACTGCGTCAGAA  250

seq1  GGAAGCCAGCGTGGCCACCAACTAAGATGAAAACAGAAGGAAGTTACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAGCGTGGCCACCAACTAAGATGAAAACAGAAGGAAGTTACAAT  300

seq1  ATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGACAGCACCTCACTGCTCCTGCAGACACAAGGGCCACCGGGGAG  350

seq1  TTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAAGACTAGTTAGGGACATTTGCTCATCTCCTTCTGAGGCCATC  400

seq1  TGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAGTCCCCTGTGCCTTCTTTGGGAAGTCTCTTGTCAATCCACAA  450

seq1  GAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGCAAAGTTATGTTTGGGAACACTACAGGAATATGTAATTGTTT  500

seq1  CTTGCAGAAGTCTTAAGTCCACCCAATAATAAGATCAGAAGATATTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAAGTCTTAAGTCCACCCAATAATAAGATCAGAAGATATTTAAT  550

seq1  TCTTTTCACATTTTATTTATTTAAAGTGGAAATTCTAAGCCTTCCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCACATTTTATTTATTTAAAGTGGAAATTCTAAGCCTTCCAGTAT  600

seq1  ATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAGAACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTTGTCATGAGAAAAGAGGTACATGGTGATCCCCAAGAGAACTCA  650

seq1  AGCCTTATTCCTCACACACTACAGTTTGTATTGATCTTAATTTTTATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTCCTCACACACTACAGTTTGTATTGATCTTAATTTTTATCCT  700

seq1  GTTATACTGAGATCCTATTGCATTTTCACCAAAAATATTGAAACTTACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTGAGATCCTATTGCATTTTCACCAAAAATATTGAAACTTACCA  750

seq1  GAATTGATTTTGAAGAGGTTTAATACTGTGTATCTCCCAGACTAGCAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGATTTTGAAGAGGTTTAATACTGTGTATCTCCCAGACTAGCAAAA  800

seq1  TGATTTTTG-AGGAGAAGAATGATGGTGGT-GGTGGTGATGATGG  843
      ||||||||| |||||||||||||||||||| |||||||  |||||
seq2  TGATTTTTGAAGGAGAAGAATGATGGTGGTGGGTGGTG--GATGG  843