BAC Information

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BAC

Clone NameB6Ng01-143B19
Chromosome8 (Build37)
Map Location 19,733,395 - 19,734,488
singlet/doubletsinglet
Overlap gene4930467E23Rik
Upstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B19.bB6Ng01-143B19.g
ACCDH941134DH941135
length2011,083
definitionDH941134|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B19, 5' end.DH941135|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgcactaaaaccatctggcatctggccctgggcttttcagttgtgagact
ttttttttagtatagaatggagcttatgtaggtcatgggtaggggagtta
agagggtagcagagtcagagaaaggcagacagaaggagaaagtagagaca
tagaggctggccatggtcacatggagagagaggggaagggagtgaggggg
g
gaattcttagaatatctaggtgtgttggcagaatccttaaactctaccac
tgggaaagagatgtggtggggagattataaagttaggcaagcaagcctgg
gggttcttgaaagaccttgtgtctaaagagagtgataatatgcagaagtg
gaactctatgttttattttagggaaactattcagtgcaatggtagaaaac
atctctcttgacttccttgaatttaagatgtatttctttgtacaatttta
caggccacccaacgagacaatgtggattgtgcttccgtattgctcaccca
caatgcggatccaaatctgatagattccagtgggaacacagccttccacc
atgctatatccaggggtaacataaggattgtaaaaatgctccttgagcac
aacgtagacattgaagccaaaacagaggtaaagatcactcaacttcattc
ccagggcacctctagcagtgacacgcacatctattttctacacacagaag
ctcatgcattttcactgtatctgttcagtggaacacttttattttcacca
aatatgttttttcatatttttggtagttcattcaaaaaaaatagtgtatt
ttgtctcagaattggccttgattttaaaattcaaaaataaaggatttagg
accacacaaacatcacatatgcacagacaataaaaataaattcatttcaa
gttaagtgattgtagaataaatagaaatgtgttgatgcaaagaaggtact
gatatgtgtttggcttaggataagggtagactggaaaatgagagaggtaa
caggcaaatgaagaaatttggtcactggagaaaatatgccaaaaagttat
ttaaggtttaaagttttgattgtacatgggagaagctgtcaagcttctga
gataaattcttagtttagaaaagaaatatatttggaaatacaggttgaga
ctctgcccagacccctctgagcacacttctttcacagggcttgcacagtg
tactctgatttctggctgtggcatgagccccactccacggagctagaaga
atgcaatccctgattgtttggggaagagttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19733395_19734488
seq2: B6Ng01-143B19.g_67_1149

seq1  GAATTCTTAGAATATCTAGGTGTGTTGGCAGAATCCTTAAACTCTACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATATCTAGGTGTGTTGGCAGAATCCTTAAACTCTACCAC  50

seq1  TGGGAAAGAGATGTGGTGGGGAGATTATAAAGTTAGGCAAGCAAGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGAGATGTGGTGGGGAGATTATAAAGTTAGGCAAGCAAGCCTGG  100

seq1  GGGTTCTTGAAAGACCTTGTGTCTAAAGAGAGTGATAATATGCAGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTGAAAGACCTTGTGTCTAAAGAGAGTGATAATATGCAGAAGTG  150

seq1  GAACTCTATGTTTTATTTTAGGGAAACTATTCAGTGCAATGGTAGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTATGTTTTATTTTAGGGAAACTATTCAGTGCAATGGTAGAAAAC  200

seq1  ATCTCTCTTGACTTCCTTGAATTTAAGATGTATTTCTTTGTACAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTTGACTTCCTTGAATTTAAGATGTATTTCTTTGTACAATTTTA  250

seq1  CAGGCCACCCAACGAGACAATGTGGATTGTGCTTCCGTATTGCTCACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCACCCAACGAGACAATGTGGATTGTGCTTCCGTATTGCTCACCCA  300

seq1  CAATGCGGATCCAAATCTGATAGATTCCAGTGGGAACACAGCCTTCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCGGATCCAAATCTGATAGATTCCAGTGGGAACACAGCCTTCCACC  350

seq1  ATGCTATATCCAGGGGTAACATAAGGATTGTAAAAATGCTCCTTGAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATATCCAGGGGTAACATAAGGATTGTAAAAATGCTCCTTGAGCAC  400

seq1  AACGTAGACATTGAAGCCAAAACAGAGGTAAAGATCACTCAACTTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAGACATTGAAGCCAAAACAGAGGTAAAGATCACTCAACTTCATTC  450

seq1  CCAGGGCACCTCTAGCAGTGACACGCACATCTATTTTCTACACACAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCACCTCTAGCAGTGACACGCACATCTATTTTCTACACACAGAAG  500

seq1  CTCATGCATTTTCACTGTATCTGTTCAGTGGAACACTTTTATTTTCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGCATTTTCACTGTATCTGTTCAGTGGAACACTTTTATTTTCACCA  550

seq1  AATATGTTTTTTCATATTTTTGGTAGTTCATTCAAAAAAAATAGTGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTTTCATATTTTTGGTAGTTCATTCAAAAAAAATAGTGTATT  600

seq1  TTGTCTCAGAATTGGCCTTGATTTTAAAATTCAAAAATAAAGGATTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGAATTGGCCTTGATTTTAAAATTCAAAAATAAAGGATTTAGG  650

seq1  ACCACACAAACATCACATACGCACAGACAATAAAAATAAATTCATTTCAA  700
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACCACACAAACATCACATATGCACAGACAATAAAAATAAATTCATTTCAA  700

seq1  GTTAAGTGATTGTAGAATAAATAGAAATGTGTTGATGCAAAGAAGGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTGATTGTAGAATAAATAGAAATGTGTTGATGCAAAGAAGGTACT  750

seq1  GATATGTGTTTGGCTTAGGATAAGGGTAGACTGGAAAACGAGAGAGGTAA  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GATATGTGTTTGGCTTAGGATAAGGGTAGACTGGAAAATGAGAGAGGTAA  800

seq1  CAGGCAAATGAAGAAATTTGGTCACTGGAGAAAATATGCCAAAAAAGTTA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGCAAATGAAGAAATTTGGTCACTGGAGAAAATATGCC-AAAAAGTTA  849

seq1  TTTAAGGTTTAAAAAGTTTTGA-TGTACATGGGAGAGGCTGTCAAGCTTC  899
      ||||||||||  |||||||||| ||||||||||||| |||||||||||||
seq2  TTTAAGGTTT--AAAGTTTTGATTGTACATGGGAGAAGCTGTCAAGCTTC  897

seq1  TGAGATAAATTCTTAGTTTAGAAAAGAAATATATTT-GAAATACAGGTTG  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGATAAATTCTTAGTTTAGAAAAGAAATATATTTGGAAATACAGGTTG  947

seq1  AGAAACTCTGCCCCAGACCCCTCCTGAGCACACTCCTTCAACAGGGGCAT  998
      ||  |||||| ||||||||||| ||||||||||| |||  ||||||   |
seq2  AG--ACTCTG-CCCAGACCCCT-CTGAGCACACTTCTTTCACAGGG--CT  991

seq1  AGCACAGTGTACTCTGTATTCTGGGCTGTGGCAATGGAGGCCCCACTCCA  1048
       |||||||||||||||  |||| ||||||||| |||   |||||||||||
seq2  TGCACAGTGTACTCTGATTTCT-GGCTGTGGC-ATG--AGCCCCACTCCA  1037

seq1  CGGAGCTAAGAAGATTGCAATCCTTGAGTGTTTGGGG-AGAGTTCTG  1094
      ||||||| |||||| |||||||| ||| ||||||||| |||||||||
seq2  CGGAGCT-AGAAGAATGCAATCCCTGATTGTTTGGGGAAGAGTTCTG  1083