BAC Information

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BAC

Clone NameB6Ng01-143F17
Chromosome8 (Build37)
Map Location 52,260,927 - 52,362,799
singlet/doubletdoublet
Overlap geneLOC667517
Upstream geneLOC100039954, LOC100039966
Downstream geneLOC623872, LOC100040220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143F17.bB6Ng01-143F17.g
ACCDH941315DH941316
length1,1271,049
definitionDH941315|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F17, 5' end.DH941316|Mus musculus domesticus DNA, BAC clone: B6Ng01-143F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,361,658 - 52,362,799)(52,260,927 - 52,261,996)
sequence
tataaaagacatttataagaaaaaatattttctctcttctgagccaggat
ctcctgtactgagttgatcagaatttcctaaccttcctgactttatttct
aaatcactaagattataagcatgtattttaatgccttgtttaagagaaat
tattaatcaattacaatttttcaaagaccatttgaagaacatggttaata
ccatgcttatcataatatataactttatatcattgcagctaatatatctt
tttttagtgcgtaaaaataaactgcattatgtgagcacagtcagtgaaaa
acaaaacaaaagcaaaacaatgagatgcaaatcaaagcaaaacaaaacaa
aaaagcctgtatatttttatggtattataatttgaaaacgttccaaatgc
cctgaacttttcttcatataggaagagaagttcctttcaaaaccacttga
actttggacaaaagtaacttttttcctgatcattctgtagtatcagaaat
tcagttacaagttatactacttaaccttgcagaaaatacactccagccct
tatgacctcatcaagcaaacgtgggtggcaatctgaggtatgtggcaaaa
tagcacttttatttcttcacaagaaaattatctcccacacccttctctgc
tgcttccattgtcttacctgtgtgcaaatctacacctacaaggatatctg
attctgagtgttcaacttggaccttaacatattcagaatgtcaaaaccag
agccctgagcaagaaccttgtgaataatgtgcaagacgtctgcgaatgcc
agaactctgagttgaaccctggccttcagattggatttgtatttaatcat
aaattcttttattggtacttctatagtttcaacccctaggaaaactcagc
caccatagcttttggatggtcttactgaatccttgatttgagtagtgtgt
acttattggtcatgtccagtaatgtgacagatagagatgtacatttatca
atatatcctcatctttatccatctcaaacaatagttactccagataagcc
taggaatttctagcgagtagctcatcaagagattcaactgtacctccaag
gcaaggccaatctcttgcttggtcaga
gaattcacttattaactgaaattcagtaactcaaattagttttgtaaatc
taaaaatacgtgaatttattaacagaaatatgctactaaaatattgggga
ttagattttctttcttatatctgaattcaaagttcaaattcttaaaagtt
tgttaggggatacattatttttgtttggtttatttcagttgatacattat
cctccaaaacttcatgaaactatatcaagcctccatgttctgagggtctc
cacaatgagacatgtagtgtagtattatttgatcatggagatacagagcc
tcttttataaaagagaaaatctctcaatatattaaactctgctatattaa
ttcagtgatttttttttggttgatcgggtttataggtacagcatgaaaat
ggacagctcacagcttcctggttaaaataattcaagtttgagatctcata
ttttctctaatgtgcaatatatgagctgaaaaataccaacctcaatattg
ggccatgctaagtgccttgacagttaactgtcagaaatatgcaaagactg
gagcacaatggaaatctgtggtgaaagaacatgtggcatggtgggaatga
tgtttacaatgccgtgtaagacaatgtgtgaggtgatactaaggaagttt
cacaataaaagcatgtgcctgcacatgattccaaccattatggacattta
ggtttgtataatttattataagactacatcttttgaagtatttgaaatta
taatgatgacaaaataaaatggaggatcaaactagcagtttaaaatcact
tcattaattgcttcagtagaacttgacatcatgttgttgcatgatatgca
aatctggaaacctaactgctttgggaaataaaggcatactggagcaggtt
cacttatctgaatgtgtcacccttaagaactgattgccatttgcctgatg
catatatggtaccaatctacaatttcccatggatctgtaaaagaaggtgt
ttctcttgacattcatttgctgcttcggaaaatatttagcatgagactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52361658_52362799
seq2: B6Ng01-143F17.b_61_1187 (reverse)

seq1  TCTGAACCAAGCCAGGAGATTGACCTTTGCTTGTGAGGTACAGTTATGAA  50
      |||| |||||| || ||||||| ||||  |||| ||||||||||  ||||
seq2  TCTG-ACCAAG-CAAGAGATTGGCCTTGCCTTG-GAGGTACAGT--TGAA  45

seq1  TCTCTTTGATGAGCTAACTCTGGCTAGAATATACTAGGCTTATCTGTGAG  100
      |||| |||||||||||   || |||||||  | ||||||||||||| |||
seq2  TCTC-TTGATGAGCTA---CTCGCTAGAAATTCCTAGGCTTATCTG-GAG  90

seq1  TATACTA-TGTGTGAGATGGAT-AAGATGA-GATATATTGATAAATGTAA  147
      || |||| ||| |||||||||| ||||||| |||||||||||||||||| 
seq2  TA-ACTATTGTTTGAGATGGATAAAGATGAGGATATATTGATAAATGTA-  138

seq1  CAATCTCTATTCTGTCACATTACTGGACATGAACCAAATAAGTACACACT  197
        ||||||| ||||||||||||||||||||||  | ||||||||||||||
seq2  -CATCTCTA-TCTGTCACATTACTGGACATGA--CCAATAAGTACACACT  184

seq1  AACTCAAATCAAGGATTCAGTAAGGACCATCCAAAAGCTATGGTGGCTGA  247
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  -ACTCAAATCAAGGATTCAGTAA-GACCATCCAAAAGCTATGGTGGCTGA  232

seq1  GTTTTCCTAGGGGTTGAAACTATAGAAGTAACAATAAAAGAATTTATGAT  297
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTTTCCTAGGGGTTGAAACTATAGAAGTACCAATAAAAGAATTTATGAT  282

seq1  TAAATACAAATCCAATCTGAAGGCCAGGGTTCAACTCAGAGTTCTGGCAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAAATCCAATCTGAAGGCCAGGGTTCAACTCAGAGTTCTGGCAT  332

seq1  TCGCAGACGTCTTGCACATTATTCACAAGGTTCTTGCTCAGGGCTCTGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCAGACGTCTTGCACATTATTCACAAGGTTCTTGCTCAGGGCTCTGGT  382

seq1  TTTGACATTCTGAATATGTTAAGGTCCAAGTTGAACACTCAGAATCAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATTCTGAATATGTTAAGGTCCAAGTTGAACACTCAGAATCAGAT  432

seq1  ATCCTTGTAGGTGTAGATTTGCACACAGGTAAGACAATGGAAGCAGCAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTAGGTGTAGATTTGCACACAGGTAAGACAATGGAAGCAGCAGA  482

seq1  GAAGGGTGTGGGAGATAATTTTCTTGTGAAGAAATAAAAGTGCTATTTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGTGGGAGATAATTTTCTTGTGAAGAAATAAAAGTGCTATTTTG  532

seq1  CCACATACCTCAGATTGCCACCCACGTTTGCTTGATGAGGTCATAAGGGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACCTCAGATTGCCACCCACGTTTGCTTGATGAGGTCATAAGGGC  582

seq1  TGGAGTGTATTTTCTGCAAGGTTAAGTAGTATAACTTGTAACTGAATTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTATTTTCTGCAAGGTTAAGTAGTATAACTTGTAACTGAATTTC  632

seq1  TGATACTACAGAATGATCAGGAAAAAAGTTACTTTTGTCCAAAGTTCAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTACAGAATGATCAGGAAAAAAGTTACTTTTGTCCAAAGTTCAAG  682

seq1  TGGTTTTGAAAGGAACTTCTCTTCCTATATGAAGAAAAGTTCAGGGCATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGAAAGGAACTTCTCTTCCTATATGAAGAAAAGTTCAGGGCATT  732

seq1  TGGAACGTTTTCAAATTATAATACCATAAAAATATACAGGCTTTTTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACGTTTTCAAATTATAATACCATAAAAATATACAGGCTTTTTTGTT  782

seq1  TTGTTTTGCTTTGATTTGCATCTCATTGTTTTGCTTTTGTTTTGTTTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGCTTTGATTTGCATCTCATTGTTTTGCTTTTGTTTTGTTTTTC  832

seq1  ACTGACTGTGCTCACATAATGCAGTTTATTTTTACGCACTAAAAAAAGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGTGCTCACATAATGCAGTTTATTTTTACGCACTAAAAAAAGAT  882

seq1  ATATTAGCTGCAATGATATAAAGTTATATATTATGATAAGCATGGTATTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGCTGCAATGATATAAAGTTATATATTATGATAAGCATGGTATTA  932

seq1  ACCATGTTCTTCAAATGGTCTTTGAAAAATTGTAATTGATTAATAATTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTCTTCAAATGGTCTTTGAAAAATTGTAATTGATTAATAATTTC  982

seq1  TCTTAAACAAGGCATTAAAATACATGCTTATAATCTTAGTGATTTAGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAACAAGGCATTAAAATACATGCTTATAATCTTAGTGATTTAGAAA  1032

seq1  TAAAGTCAGGAAGGTTAGGAAATTCTGATCAACTCAGTACAGGAGATCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCAGGAAGGTTAGGAAATTCTGATCAACTCAGTACAGGAGATCCT  1082

seq1  GGCTCAGAAGAGAGAAAATATTTTTTCTTATAAATGTCTTTTATA  1142
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAAGAGAGAAAATATTTTTTCTTATAAATGTCTTTTATA  1127

seq1: chr8_52260927_52261996
seq2: B6Ng01-143F17.g_67_1115

seq1  GAATTCACTTATTAACTGAAATTCAGTAACTCAAATTAGTTTTGTAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATTAACTGAAATTCAGTAACTCAAATTAGTTTTGTAAATC  50

seq1  TAAAAATACGTGAATTTATTAACAGAAATATGCTACTAAAATATTGGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACGTGAATTTATTAACAGAAATATGCTACTAAAATATTGGGGA  100

seq1  TTAGATTTTCTTTCTTATATCTGAATTCAAAGTTCAAATTCTTAAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTCTTTCTTATATCTGAATTCAAAGTTCAAATTCTTAAAAGTT  150

seq1  TGTTAGGGGATACATTATTTTTGTTTGGTTTATTTCAGTTGATACATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGGATACATTATTTTTGTTTGGTTTATTTCAGTTGATACATTAT  200

seq1  CCTCCAAAACTTCATGAAACTATATCAAGCCTCCATGTTCTGAGGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAACTTCATGAAACTATATCAAGCCTCCATGTTCTGAGGGTCTC  250

seq1  CACAATGAGACATGTAGTGTAGTATTATTTGATCATGGAGATACAGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAGACATGTAGTGTAGTATTATTTGATCATGGAGATACAGAGCC  300

seq1  TCTTTTATAAAAGAGAAAATCTCTCAATATATTAAACTCTGCTATATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATAAAAGAGAAAATCTCTCAATATATTAAACTCTGCTATATTAA  350

seq1  TTCAGTGATTTTTTTTTGGTTGATCGGGTTTATAGGTACAGCATGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATTTTTTTTTGGTTGATCGGGTTTATAGGTACAGCATGAAAAT  400

seq1  GGACAGCTCACAGCTTCCTGGTTAAAATAATTCAAGTTTGAGATCTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTCACAGCTTCCTGGTTAAAATAATTCAAGTTTGAGATCTCATA  450

seq1  TTTTCTCTAATGTGCAATATATGAGCTGAAAAATACCAACCTCAATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTAATGTGCAATATATGAGCTGAAAAATACCAACCTCAATATTG  500

seq1  GGCCATGCTAAGTGCCTTGACAGTTAACTGTCAGAAATATGCAAAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCTAAGTGCCTTGACAGTTAACTGTCAGAAATATGCAAAGACTG  550

seq1  GAGCACAATGGAAATCTGTGGTGAAAGAACATGTGGCATGGTGGGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAATGGAAATCTGTGGTGAAAGAACATGTGGCATGGTGGGAATGA  600

seq1  TGTTTACAATGCCGTGTAAGACAATGTGTGAGGTGATACTAAGGAAGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAATGCCGTGTAAGACAATGTGTGAGGTGATACTAAGGAAGTTT  650

seq1  CACAATAAAAGCATGTGCCTGCACATGATTCCAACCATTATGGACATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAAAAGCATGTGCCTGCACATGATTCCAACCATTATGGACATTTA  700

seq1  GGTTTGTATAATTTATTATAAGACTACATCTTTTGAAGTATTTGAAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTATAATTTATTATAAGACTACATCTTTTGAAGTATTTGAAATTA  750

seq1  TAATGATGACAAAATAAAATGGAGGATCAAAACTAGCAGTTTAAAATCAC  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATGATGACAAAATAAAATGGAGGATC-AAACTAGCAGTTTAAAATCAC  799

seq1  TTCATTAATTGCTTCAGTAGAACTTGACATCATGTTGTTGCATGATAATG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCATTAATTGCTTCAGTAGAACTTGACATCATGTTGTTGCATGAT-ATG  848

seq1  CAAATCTGGAAACCTAACTGCTTTGGGAAATAAAGGCATACTGGAGCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGGAAACCTAACTGCTTTGGGAAATAAAGGCATACTGGAGCAGG  898

seq1  GTCACATATCTGAATGTGTCACACCTTAAGAACTGAATTGCCATTTG-CT  949
       |||| |||||||||||||||| |||||||||||| ||||||||||| ||
seq2  TTCACTTATCTGAATGTGTCAC-CCTTAAGAACTG-ATTGCCATTTGCCT  946

seq1  GATGGCATATATGGTATACCAATCTTACAAATTTCCCCATGGATCTGTAA  999
      ||| ||||||||||  |||||||| |||||  || |||||||||||||||
seq2  GAT-GCATATATGG--TACCAATC-TACAA--TTTCCCATGGATCTGTAA  990

seq1  AAGAAAGTGTTGTTTCTCTTTGACTATCATTCTGCTTGCTTTCCCGGAAA  1049
      |||||   | |||||||| |||||  ||||| ||| |||||   ||| ||
seq2  AAGAA---GGTGTTTCTC-TTGACATTCATT-TGC-TGCTT---CGG-AA  1030

seq1  AATAATTTTAGCATGAGACTG  1070
      ||||  |||||||||||||||
seq2  AATA--TTTAGCATGAGACTG  1049