BAC Information

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BAC

Clone NameB6Ng01-144C22
Chromosome8 (Build37)
Map Location 102,982,210 - 103,063,909
singlet/doubletdoublet
Overlap geneLOC100042086
Upstream geneLOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144C22.bB6Ng01-144C22.g
ACCDH941926DH941927
length1,1271,122
definitionDH941926|Mus musculus domesticus DNA, BAC clone: B6Ng01-144C22, 5' end.DH941927|Mus musculus domesticus DNA, BAC clone: B6Ng01-144C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,062,778 - 103,063,909)(102,982,210 - 102,983,341)
sequence
gaattctctgtacttagatgcattttatttgaaaattcacagagtaaaat
ttcatagaccttggatgaagcatctcttggaaagaacattgacagtagat
aagataaaaaaccttccatgagtcactggagcagactttacacattgcct
ttgactggaggagagagaggtctatctccaaatacaagagcctgtgcaaa
catttgatatgatacacaactattaacagggactcgggttactgtgttgt
aatgactgccaaagatttcctaggaaaatttcaaacgtgtggcaaaggca
atatgtgctccatagaaatcagtcacctgttagatgaagttcaacatctt
taggatcaaacagcaaaacacagcagtatacaatataaaattcatacttt
aaaaaaggtcaagaattattagatgtactcatgatctctgtgaggaataa
tctatgatgatatataaggggggaaaccaaaaagattgtctgatttgatc
tgaaaacttcaactcaggtagagaacttgattaaacttaaagtactattt
taaataagaatatagtttcagagaattactctaacatttatatcatttca
attaaactggtctaatttattttcatgcttcacataacaagggaaaatat
ataacaatgctttgagtatttttcttgtaaataaacaactatttgttctt
ggctgatgtgaatttacattgctatgcatacatgacaaagttttccattt
ttaatagtgacaataaaagctcagccaaaaacttcatagtttaggttata
gtagcttttgtattagtattttttctgtcatgtcaatatttttgccttca
catacatgcacattttaagagcaataattattcacagtcatctagacaca
gaaaaattgctatattcattttaaatgaaacatttgtacaaattaaaaag
tcattgttttgaaatttggcttgaagaaagatgaatagttggggtttgag
aaaaaagtatgactaggctttattgttgaaatctcacatgtgggcaaaat
atttcctcagtgcttcctcacaaacacagtataaatccctaaagaggcta
gattttctgtattaattctcaatacta
gaattcaaaggctagataactgatatcagacatggttctgagtagaagac
tcccagagctcctgagtgaaaaatgtaaagatggtagtaacctagatatg
cacagattttatgaatcaccaggcattttctgtgtccatctcaggatgat
aatgtatatctaggcactcatagctattgggtgaaataggaaagatcaga
actagaagatcataatcccattcactttaagattaaaatcaaatgtcagc
tttctgaaaagagagaaagtttaattacaaattatttcaaggttagtttt
atatctgagtattttctgtagtatagacaaaaagttttacaacactgttt
aagaaactcaaaaataatttaccaatatttcataaaactggtatagacat
taccaggggagagaaggaaaccaagacatgacttttctttgtttcagcct
tagctaccttcagtgtttgacttttttatgaccctcagactcagaatcaa
taaggtgaggttactggagggaagcttctcaggccccaacccatagctaa
ggaatcaggggttttggataagggtcagagtatcctgctttgaaaatagc
ttccagcataagtctgagactccctgcactagattccattgacattgctc
ttcacagacccaaaacagtacctgcaggcatcactttaaccccacagggc
agttgaacttgaatcaaagtactgccccaggctctgtcttcatccacatg
aatgtctccatgaaccaattttcttacctccctggacacatctccttatt
cttgctttctctcttcatctaatgtcttcatttcttacctaagctttctg
aacttgtcttcctttttctgtggaaattcctgcacctcagtcctaggaca
gcaataaagcaaaaattaactcagctgacatgctgtcttgagaggagttc
tttccaacagaccatgtcttttctttctttcttttttttttttaggatta
tacatttatatgggtgatctctttgcatatacaccagcaagagagaagaa
gattcaaattctttgtgtggtgttgaactacatgctttggctggactgac
tcagacctctggagaaacagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_103062778_103063909
seq2: B6Ng01-144C22.b_46_1172 (reverse)

seq1  TAGTATTTGAGAATTAATACAGAAAATTCTAGCCTCTTTAGGGAATTTAA  50
      ||||| |||||||||||||||||||| |||||||||||||||| ||||| 
seq2  TAGTA-TTGAGAATTAATACAGAAAA-TCTAGCCTCTTTAGGG-ATTTA-  46

seq1  TAACTGTGTTTGTGAGGAAGCACTGAGAAATTATTTTGCCCACATGTGAG  100
        ||||||||||||||||||||||||| || |||||||||||||||||||
seq2  -TACTGTGTTTGTGAGGAAGCACTGAGGAAATATTTTGCCCACATGTGAG  95

seq1  ATTTC-ACAATAAAGCCTAGTCATACTTTTTTCTCAAAACCCAAACTATT  149
      ||||| ||||||||||||||||||||||||||||| |||||| |||||||
seq2  ATTTCAACAATAAAGCCTAGTCATACTTTTTTCTC-AAACCCCAACTATT  144

seq1  CATCTTTCTTCAAGCCAAATTTCAAAACAATGACTTTTTAATTTGTACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCTTCAAGCCAAATTTCAAAACAATGACTTTTTAATTTGTACAA  194

seq1  ATGTTTCATTTAAAATGAATATAGCAATTTTTCTGTGTCTAGATGACTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATTTAAAATGAATATAGCAATTTTTCTGTGTCTAGATGACTGT  244

seq1  GAATAATTATTGCTCTTAAAATGTGCATGTATGTGAAGGCAAAAATATTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTATTGCTCTTAAAATGTGCATGTATGTGAAGGCAAAAATATTG  294

seq1  ACATGACAGAAAAAATACTAATACAAAAGCTACTATAACCTAAACTATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGAAAAAATACTAATACAAAAGCTACTATAACCTAAACTATGA  344

seq1  AGTTTTTGGCTGAGCTTTTATTGTCACTATTAAAAATGGAAAACTTTGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGGCTGAGCTTTTATTGTCACTATTAAAAATGGAAAACTTTGTC  394

seq1  ATGTATGCATAGCAATGTAAATTCACATCAGCCAAGAACAAATAGTTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCATAGCAATGTAAATTCACATCAGCCAAGAACAAATAGTTGTT  444

seq1  TATTTACAAGAAAAATACTCAAAGCATTGTTATATATTTTCCCTTGTTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAAGAAAAATACTCAAAGCATTGTTATATATTTTCCCTTGTTAT  494

seq1  GTGAAGCATGAAAATAAATTAGACCAGTTTAATTGAAATGATATAAATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCATGAAAATAAATTAGACCAGTTTAATTGAAATGATATAAATGT  544

seq1  TAGAGTAATTCTCTGAAACTATATTCTTATTTAAAATAGTACTTTAAGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTAATTCTCTGAAACTATATTCTTATTTAAAATAGTACTTTAAGTT  594

seq1  TAATCAAGTTCTCTACCTGAGTTGAAGTTTTCAGATCAAATCAGACAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGTTCTCTACCTGAGTTGAAGTTTTCAGATCAAATCAGACAATC  644

seq1  TTTTTGGTTTCCCCCCTTATATATCATCATAGATTATTCCTCACAGAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGTTTCCCCCCTTATATATCATCATAGATTATTCCTCACAGAGAT  694

seq1  CATGAGTACATCTAATAATTCTTGACCTTTTTTAAAGTATGAATTTTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTACATCTAATAATTCTTGACCTTTTTTAAAGTATGAATTTTATA  744

seq1  TTGTATACTGCTGTGTTTTGCTGTTTGATCCTAAAGATGTTGAACTTCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACTGCTGTGTTTTGCTGTTTGATCCTAAAGATGTTGAACTTCAT  794

seq1  CTAACAGGTGACTGATTTCTATGGAGCACATATTGCCTTTGCCACACGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGGTGACTGATTTCTATGGAGCACATATTGCCTTTGCCACACGTT  844

seq1  TGAAATTTTCCTAGGAAATCTTTGGCAGTCATTACAACACAGTAACCCGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTCCTAGGAAATCTTTGGCAGTCATTACAACACAGTAACCCGA  894

seq1  GTCCCTGTTAATAGTTGTGTATCATATCAAATGTTTGCACAGGCTCTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTTAATAGTTGTGTATCATATCAAATGTTTGCACAGGCTCTTGT  944

seq1  ATTTGGAGATAGACCTCTCTCTCCTCCAGTCAAAGGCAATGTGTAAAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGATAGACCTCTCTCTCCTCCAGTCAAAGGCAATGTGTAAAGTC  994

seq1  TGCTCCAGTGACTCATGGAAGGTTTTTTATCTTATCTACTGTCAATGTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGTGACTCATGGAAGGTTTTTTATCTTATCTACTGTCAATGTTC  1044

seq1  TTTCCAAGAGATGCTTCATCCAAGGTCTATGAAATTTTACTCTGTGAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGAGATGCTTCATCCAAGGTCTATGAAATTTTACTCTGTGAATT  1094

seq1  TTCAAATAAAATGCATCTAAGTACAGAGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  TTCAAATAAAATGCATCTAAGTACAGAGAATTC  1127

seq1: chr8_102982210_102983341
seq2: B6Ng01-144C22.g_65_1186

seq1  GAATTCAAAGGCTAGATAACTGATATCAGACATGGTTCTGAGTAGAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGCTAGATAACTGATATCAGACATGGTTCTGAGTAGAAGAC  50

seq1  TCCCAGAGCTCCTGAGTGAAAAATGTAAAGATGGTAGTAACCTAGATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGCTCCTGAGTGAAAAATGTAAAGATGGTAGTAACCTAGATATG  100

seq1  CACAGATTTTATGAATCACCAGGCATTTTCTGTGTCCATCTCAGGATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTTTATGAATCACCAGGCATTTTCTGTGTCCATCTCAGGATGAT  150

seq1  AATGTATATCTAGGCACTCATAGCTATTGGGTGAAATAGGAAAGATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATATCTAGGCACTCATAGCTATTGGGTGAAATAGGAAAGATCAGA  200

seq1  ACTAGAAGATCATAATCCCATTCACTTTAAGATTAAAATCAAATGTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGATCATAATCCCATTCACTTTAAGATTAAAATCAAATGTCAGC  250

seq1  TTTCTGAAAAGAGAGAAAGTTTAATTACAAATTATTTCAAGGTTAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAAGAGAGAAAGTTTAATTACAAATTATTTCAAGGTTAGTTTT  300

seq1  ATATCTGAGTATTTTCTGTAGTATAGACAAAAAGTTTTACAACACTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGAGTATTTTCTGTAGTATAGACAAAAAGTTTTACAACACTGTTT  350

seq1  AAGAAACTCAAAAATAATTTACCAATATTTCATAAAACTGGTATAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCAAAAATAATTTACCAATATTTCATAAAACTGGTATAGACAT  400

seq1  TACCAGGGGAGAGAAGGAAACCAAGACATGACTTTTCTTTGTTTCAGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGGAGAGAAGGAAACCAAGACATGACTTTTCTTTGTTTCAGCCT  450

seq1  TAGCTACCTTCAGTGTTTGACTTTTTTATGACCCTCAGACTCAGAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACCTTCAGTGTTTGACTTTTTTATGACCCTCAGACTCAGAATCAA  500

seq1  TAAGGTGAGGTTACTGGAGGGAAGCTTCTCAGGCCCCAACCCATAGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAGGTTACTGGAGGGAAGCTTCTCAGGCCCCAACCCATAGCTAA  550

seq1  GGAATCAGGGGTTTTGGATAAGGGTCAGAGTATCCTGCTTTGAAAATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGGGGTTTTGGATAAGGGTCAGAGTATCCTGCTTTGAAAATAGC  600

seq1  TTCCAGCATAAGTCTGAGACTCCCTGCACTAGATTCCATTGACATTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATAAGTCTGAGACTCCCTGCACTAGATTCCATTGACATTGCTC  650

seq1  TTCACAGACCCAAAACAGTACCTGCAGGCATCACTTTAACCCCACAGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGACCCAAAACAGTACCTGCAGGCATCACTTTAACCCCACAGGGC  700

seq1  AGTTGAACTTGAATCAAAGTACTGCCCCAGGCTCTGTCTTCATCCACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAACTTGAATCAAAGTACTGCCCCAGGCTCTGTCTTCATCCACATG  750

seq1  AATGTCTCCATGAACCAATTTTCTTACCTCCCTGGACACATCTCCTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCATGAACCAATTTTCTTACCTCCCTGGACACATCTCCTTATT  800

seq1  CTTGCTTTCTCTCTTCATCTAATGTCTTCATTTCTTACCTAAGCTTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTCTCTCTTCATCTAATGTCTTCATTTCTTACCTAAGCTTTCTG  850

seq1  AACTTGTCTTCCTTTTTCTGTGGAAATTCCTGCACCTCAGTCCTAGGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTCTTCCTTTTTCTGTGGAAATTCCTGCACCTCAGTCCTAGGACA  900

seq1  GCAATAAAAGCAAAAATTAACTCAGGCTGACATGCTGTCTTGAGAGGAGT  950
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  GCAAT-AAAGCAAAAATTAACTCA-GCTGACATGCTGTCTTGAGAGGAGT  948

seq1  TCTTTCCAACAGACCATGTCTTTTCTTTTCTTTCTTTTTTTTTTTTTAGG  1000
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TCTTTCCAACAGACCATGTCTTTTC-TTTCTTTC-TTTTTTTTTTTTAGG  996

seq1  ATTTATACATTTATATGGGTGATCTCTTTGCATATACACCAGCAAGAGAG  1050
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTATACATTTATATGGGTGATCTCTTTGCATATACACCAGCAAGAGAG  1045

seq1  AAGAAGGTATCAAA-TCTTTGTGTGGTTGTGAGCTACCATGCTTTTGCTG  1099
      |||||| | ||||| ||||||||||||  ||| ||| |||||||| ||||
seq2  AAGAAGAT-TCAAATTCTTTGTGTGGTGTTGAACTA-CATGCTTTGGCTG  1093

seq1  GGAACTGAACTCAAGACCTCTGGAAGAACAGAC  1132
      |  |||| |||| |||||||||||  |||||||
seq2  G--ACTG-ACTC-AGACCTCTGGAGAAACAGAC  1122