BAC Information

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BAC

Clone NameB6Ng01-144N19
Chromosome8 (Build37)
Map Location 83,187,029 - 83,325,118
singlet/doubletdoublet
Overlap geneFrem3, Smarca5, Gab1, LOC666237
Upstream geneOtud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075, Gypa
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N19.bB6Ng01-144N19.g
ACCDH942425DH942426
length1,098251
definitionDH942425|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N19, 5' end.DH942426|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,187,029 - 83,188,134)(83,324,870 - 83,325,118)
sequence
gaattctttttattaaaatatacttttgaggaaaagcagaaaaaaaaaga
aattaacggacatgtattgagtatctaatttgtgaccaccgatttgtagt
attcttcccctaagcctttatgatattctctagaaaataaagagcctttc
ctctctacaaaaacagaacaatacataggtcctgatcattattcctttca
tcacttctgctcacgtcttctttatccctcacacttacaggaggaaagca
gctaagaaaccagcctttccatctaaactgggcttggatttctttggaaa
aagaatactacattgtggatgaagactccccattcttcgaagtgactctc
acccgcaggggataccttggaggcacatctgtcgttagtaagtaaggatt
ggctgtcagcaaaagggtatggagacatgaaatgtgggcttcagacagcc
gtgagagagcagactagaagagatggctggactgatggaatacctacaaa
agttacaggaaacctgtgttgtgtgcactacaggataagctacagctgat
atcctgtggttctctgtgtggtttccttgttctaatagattatattattt
tccttttctataattcaaaaaactccaggaaaattgagacatttcctagc
catcccacaatccccagctcaccaacttttttttctattgaaaatagatt
ttttttttcctcacacaaaccataaatctcaaccagtttccactcctccc
agctccccacaaccatcccataccctcagatccactctccctccatttcc
tcttcagaaaagagcagatctccaagagacaacaaccaaaaaggacaaaa
caagatacaataagacaagcctaagtcctcacactgaggatgaatgaggc
aaccctataagaggaaaagagtctcaagaacaagcacagagtcaggacac
atctgctctcactgtagagtccacaaaaacacccagctaacagcatggca
taaacacagagaacctggtgtagacccatgcaggccctgtgctgctgctt
cagtctctgttgagcttgcttagttgatcaggttgcatgatcttctgg
tacgttttaatgtctgtcagtcttatgaagaagcaccataagtgtattct
tttgtacctaggggtgggggacagtgtgtgcgtgtatgtgtgtgtgcgtg
tgtgtgcactcacacacgctcatggaggctcaaagaggacatcatgtgac
ctgctctatcttatccctttaatacagaggactgaacacagagctacact
ggtggccaaaaagcctcaaccttcccttttttgtctctgttctgtgtggc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_83187029_83188134
seq2: B6Ng01-144N19.b_46_1143

seq1  GAATTCTTTTTATTAAAATATACTTTTGAGGAAAAGCAGAAAAAAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTAAAATATACTTTTGAGGAAAAGCAGAAAAAAAAAGA  50

seq1  AATTAACGGACATGTATTGAGTATCTAATTTGTGACCACCGATTTGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACGGACATGTATTGAGTATCTAATTTGTGACCACCGATTTGTAGT  100

seq1  ATTCTTCCCCTAAGCCTTTATGATATTCTCTAGAAAATAAAGAGCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCCTAAGCCTTTATGATATTCTCTAGAAAATAAAGAGCCTTTC  150

seq1  CTCTCTACAAAAACAGAACAATACATAGGTCCTGATCATTATTCCTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACAAAAACAGAACAATACATAGGTCCTGATCATTATTCCTTTCA  200

seq1  TCACTTCTGCTCACGTCTTCTTTATCCCTCACACTTACAGGAGGAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTGCTCACGTCTTCTTTATCCCTCACACTTACAGGAGGAAAGCA  250

seq1  GCTAAGAAACCAGCCTTTCCATCTAAACTGGGCTTGGATTTCTTTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAACCAGCCTTTCCATCTAAACTGGGCTTGGATTTCTTTGGAAA  300

seq1  AAGAATACTACATTGTGGATGAAGACTCCCCATTCTTCGAAGTGACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTACATTGTGGATGAAGACTCCCCATTCTTCGAAGTGACTCTC  350

seq1  ACCCGCAGGGGATACCTTGGAGGCACATCTGTCGTTAGTAAGTAAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCAGGGGATACCTTGGAGGCACATCTGTCGTTAGTAAGTAAGGATT  400

seq1  GGCTGTCAGCAAAAGGGTATGGAGACATGAAATGTGGGCTTCAGACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCAGCAAAAGGGTATGGAGACATGAAATGTGGGCTTCAGACAGCC  450

seq1  GTGAGAGAGCAGACTAGAAGAGATGGCTGGACTGATGGAATACCTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAGCAGACTAGAAGAGATGGCTGGACTGATGGAATACCTACAAA  500

seq1  AGTTACAGGAAACCTGTGTTGTGTGCACTACAGGATAAGCTACAGCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGGAAACCTGTGTTGTGTGCACTACAGGATAAGCTACAGCTGAT  550

seq1  ATCCTGTGGTTCTCTGTGTGGTTTCCTTGTTCTAATAGATTATATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGTTCTCTGTGTGGTTTCCTTGTTCTAATAGATTATATTATTT  600

seq1  TCCTTTTCTATAATTCAAAAAACTCCAGGAAAATTGAGACATTTCCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTATAATTCAAAAAACTCCAGGAAAATTGAGACATTTCCTAGC  650

seq1  CATCCCACAATCCCCAGCTCACCAACTTTTTTTTCTATTGAAAATAGA-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATCCCACAATCCCCAGCTCACCAACTTTTTTTTCTATTGAAAATAGATT  700

seq1  TTTTTTTTCCTCACACAAACCATAAATCTCAACCAGTTTCCACTCCTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCTCACACAAACCATAAATCTCAACCAGTTTCCACTCCTCCC  750

seq1  AGCTCCCCACAACCATCCCATACCCTCAGATCCACTCTCCCTCCATTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCCACAACCATCCCATACCCTCAGATCCACTCTCCCTCCATTTCC  800

seq1  TCTTCAGAAAAGAGCAGATCTCCAAGAGACAACAACCAAAAAGGACAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAAAAGAGCAGATCTCCAAGAGACAACAACCAAAAAGGACAAAA  850

seq1  CAAGATACAATAAGACAAGCCTAAGTCCTCACACTGAGGATGAATGAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACAATAAGACAAGCCTAAGTCCTCACACTGAGGATGAATGAGGC  900

seq1  AACCCTATAAGAGGAAAAGAGTCTCAAGAACAAGCAACAGAGTCAGGGAC  949
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  AACCCTATAAGAGGAAAAGAGTCTCAAGAACAAGC-ACAGAGTCA-GGAC  948

seq1  ACATCTGCTCCCACTGTTAGAAGTCCCACAAAAACACCCAGCTAACAGCC  999
      |||||||||| ||||| ||| ||| ||||||||||||||||||||||| |
seq2  ACATCTGCTCTCACTG-TAG-AGT-CCACAAAAACACCCAGCTAACAG-C  994

seq1  ATGGCATATACACAGAGAACCTGGTGTAGACCCATGCAGGCCCTGTGCTT  1049
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  ATGGCATAAACACAGAGAACCTGGTGTAGACCCATGCAGGCCCTGTGC-T  1043

seq1  GCTGCTTCAGTCTCTG-TGAGCCTTGCTTAGTTGATTCAGTGTGCCATGA  1098
      |||||||||||||||| |||| ||||||||||||| |||| ||  |||||
seq2  GCTGCTTCAGTCTCTGTTGAG-CTTGCTTAGTTGA-TCAG-GTTGCATGA  1090

seq1  TCTTCTGG  1106
      ||||||||
seq2  TCTTCTGG  1098

seq1: chr8_83324870_83325118
seq2: B6Ng01-144N19.g_73_323 (reverse)

seq1  TGCCACACAGAGCAGAGACAAGAA--GGGCTGCTGAGGCTTTCTGGCCAC  48
      ||||||||||| ||||||||| ||  ||   | ||||||||| |||||||
seq2  TGCCACACAGAACAGAGACAAAAAAGGGAAGGTTGAGGCTTTTTGGCCAC  50

seq1  CAGTGTAGCTCTGTGTTCAGTCCTCTGTATTAAAGGGATAAGATAGAGCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGCTCTGTGTTCAGTCCTCTGTATTAAAGGGATAAGATAGAGCA  100

seq1  GGTCACCTGATGTCCTCTTTGAGCCTCCATGAGCGTGTGTGAGTGCACAC  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATGATGTCCTCTTTGAGCCTCCATGAGCGTGTGTGAGTGCACAC  150

seq1  ACACGCACACACACATACACGCACACACTGTCCCCCACCCCTAGGTACAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACACACACATACACGCACACACTGTCCCCCACCCCTAGGTACAA  200

seq1  AAGAATACACTTATGGTGCTTCTTCATAAGACTGACAGACATTAAAACGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACACTTATGGTGCTTCTTCATAAGACTGACAGACATTAAAACGT  250

seq1  A  249
      |
seq2  A  251