BAC Information

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BAC

Clone NameB6Ng01-145D16
Chromosome8 (Build37)
Map Location 86,897,361 - 87,017,424
singlet/doubletdoublet
Overlap geneCacna1a
Upstream gene4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130
Downstream geneIer2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145D16.bB6Ng01-145D16.g
ACCDH942693DH942694
length1,063418
definitionDH942693|Mus musculus domesticus DNA, BAC clone: B6Ng01-145D16, 5' end.DH942694|Mus musculus domesticus DNA, BAC clone: B6Ng01-145D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,897,361 - 86,898,439)(87,017,001 - 87,017,424)
sequence
gaattcatctttgaacttctacaatgagggttgcagacccaaaaaagccc
ctgtgataatttgaagatacaagagccacagcaccagtgatgtggggtct
agtctaacaaccagttttccagagaactcatgctggcccagaaacctagc
ccactcctgggagacatcaggaatttatgggcggagtctcaccagtgctt
ccctcccacttagaggccccatcacctcaacactattgcgctggggacca
ggctccatgaagaagggtaaaacagacaggtggagccaagcagagactct
taaagctttggctgagatttttccctggtcacatgaccgtgctgcattgc
aaaggtggctgagaaaccgtcagcgcctgtgcccaggcttcagactgcca
cgggcagcttcctgagtgaagatgactgatttgggacacacttgacaacc
tttctctgtgacgctttccgccccggtgaggagcagcaggctcatagcct
gcctgtcctgccctctggctgcacccaaaaaagccttcctggcttgctcc
ccagggcagtgctgtccacagccccggggcttgctgttcttcagcacgga
gacatggagaaatccaccagtttttcctccttttctctttagaggccact
tttctggatccggaaagcggcctaaacctgccaactagacagtccattca
cagaacactgcggcgttcaggtgtcctcttcagtcatacatatacatata
catatacatatacatatacatatacatatacatatacatatacatataca
tatacatatacatatacatatacatatacatatacatatacatatacata
ttccttttttcaaatcatctgtgtgtggctgtgtgtacacatgcctgtgg
gggatgggagcatgccgcatgagtgttctcttcacccagcttgagtaggg
tctcttcggccttgcttgagctagcagctgagagcgtctgattgtctctg
tctcgcgtctcatttctgtggactctggtctgcagatgtgcaccaccaat
ctgcttttatgca
aaagtcagcgtaggcttcatgagaacctgtctcccctccaagaaaaagaa
gaaagcaaatgtgtggatcccatttcttctgcagttaacaacccatttta
ctctctcagtccttgacaaaaacttaaaattagactctgagggtttttct
gtgcatgtgtgtaggtggatgtgtgtgtggggtcaacctttggtatggtt
ccagagaagcaggacattctgctgtttctaaggcagggcctctcagcctg
gagctcgccaattcagctatactggccagcccctgaactccagggatcca
cctgtcacaacttccccaacactggtggtacattcatgtgccacccacac
ctttcgtggtcgtcatggtcttcttcttcttctccttctccttctcctcc
tcctcctccacctccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_86897361_86898439
seq2: B6Ng01-145D16.b_51_1113

seq1  GAATTCATCTTTGAACTTCTACAATGAGGGTTGCAGACCCAAAAAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTGAACTTCTACAATGAGGGTTGCAGACCCAAAAAAGCCC  50

seq1  CTGTGATAATTTGAAGATACAAGAGCCACAGCACCAGTGATGTGGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATAATTTGAAGATACAAGAGCCACAGCACCAGTGATGTGGGGTCT  100

seq1  AGTCTAACAACCAGTTTTCCAGAGAACTCATGCTGGCCCAGAAACCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACAACCAGTTTTCCAGAGAACTCATGCTGGCCCAGAAACCTAGC  150

seq1  CCACTCCTGGGAGACATCAGGAATTTATGGGCGGAGTCTCACCAGTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCTGGGAGACATCAGGAATTTATGGGCGGAGTCTCACCAGTGCTT  200

seq1  CCCTCCCACTTAGAGGCCCCATCACCTCAACACTATTGCGCTGGGGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCACTTAGAGGCCCCATCACCTCAACACTATTGCGCTGGGGACCA  250

seq1  GGCTCCATGAAGAAGGGTAAAACAGACAGGTGGAGCCAAGCAGAGACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATGAAGAAGGGTAAAACAGACAGGTGGAGCCAAGCAGAGACTCT  300

seq1  TAAAGCTTTGGCTGAGATTTTTCCCTGGTCACATGACCGTGCTGCATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTTTGGCTGAGATTTTTCCCTGGTCACATGACCGTGCTGCATTGC  350

seq1  AAAGGTGGCTGAGAAACCGTCAGCGCCTGTGCCCAGGCTTCAGACTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGCTGAGAAACCGTCAGCGCCTGTGCCCAGGCTTCAGACTGCCA  400

seq1  CGGGCAGCTTCCTGAGTGAAGATGACTGATTTGGGACACACTTGACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGCTTCCTGAGTGAAGATGACTGATTTGGGACACACTTGACAACC  450

seq1  TTTCTCTGTGACGCTTTCCGCCCCGGTGAGGAGCAGCAGGCTCATAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGACGCTTTCCGCCCCGGTGAGGAGCAGCAGGCTCATAGCCT  500

seq1  GCCTGTCCTGCCCTCTGGCTGCACCCAAAAAAGCCTTCCTGGCTTGCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTGCCCTCTGGCTGCACCCAAAAAAGCCTTCCTGGCTTGCTCC  550

seq1  CCAGGGCAGTGCTGTCCACAGCCCCGGGGCTTGCTGTTCTTCAGCACGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAGTGCTGTCCACAGCCCCGGGGCTTGCTGTTCTTCAGCACGGA  600

seq1  GACATGGAGAAATCCACCAGTTTTTCCTCCTTTTCTCTTTAGAGGCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGAGAAATCCACCAGTTTTTCCTCCTTTTCTCTTTAGAGGCCACT  650

seq1  TTTCTGGATCCGGAAAGCGGCCTAAACCTGCCAACTAGACAGTCCATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGATCCGGAAAGCGGCCTAAACCTGCCAACTAGACAGTCCATTCA  700

seq1  CAGAACACTGCGGCGTTCAGGTGTCCTCTTCAGTCATACATATACATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTGCGGCGTTCAGGTGTCCTCTTCAGTCATACATATACATATA  750

seq1  CATATACATATACATATACATATACATATACATATACATATACATATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATATACATATACATATACATATACATATACATATACATATACA  800

seq1  TATACATATACATATACATATACATATACATATACATATACATATACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATACATATACATATACATATACATATACATATACATATACATA  850

seq1  TTCCTTTTTTCAAATCATCTGTGTGTGGCTGTGTGTACACATGCCTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTCAAATCATCTGTGTGTGGCTGTGTGTACACATGCCTGTGG  900

seq1  GGGATGGGAGCATGCCGCATGAGTGTTTCTCTTCACCCAGCTTGAGGTAG  950
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  GGGATGGGAGCATGCCGCATGAGTG-TTCTCTTCACCCAGCTTGA-GTAG  948

seq1  GGTCTCTTCGGCCCTTGCTTGAGGCTAGCCAGCCTGAGAGCGTCTGAGTG  1000
      ||||||||||| |||||||||| ||||| ||| |||||||||||||| ||
seq2  GGTCTCTTCGG-CCTTGCTTGA-GCTAG-CAG-CTGAGAGCGTCTGATTG  994

seq1  GTTCTCTGGTCTCCGCGTCTCATTTCTGTGGGAACTCTGGGTCTGCAGAT  1050
        ||||| |||| ||||||||||||||||||  ||||| |||||||||||
seq2  --TCTCT-GTCT-CGCGTCTCATTTCTGTGG--ACTCT-GGTCTGCAGAT  1037

seq1  GTGCACCACCACATCTGGCTTTTTATGCA  1079
      ||||||||||| |||||   |||||||||
seq2  GTGCACCACCA-ATCTG--CTTTTATGCA  1063

seq1: chr8_87017001_87017424
seq2: B6Ng01-145D16.g_68_491 (reverse)

seq1  GGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGGAGAAGAAGAAGAAGA  50
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGTGGAGGAGGAGGAGGAGAAGGAGAAGGAGAAGAAGAAGAAGA  50

seq1  CCATGACGACCACGAAAGGTGTGGGTGGCACATGAATGTACCACCAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACGACCACGAAAGGTGTGGGTGGCACATGAATGTACCACCAGTGT  100

seq1  TGGGGAAGTTGTGACAGGTGGATCCCTGGAGTTCAGGGGCTGGCCAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGTTGTGACAGGTGGATCCCTGGAGTTCAGGGGCTGGCCAGTAT  150

seq1  AGCTGAATTGGCGAGCTCCAGGCTGAGAGGCCCTGCCTTAGAAACAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATTGGCGAGCTCCAGGCTGAGAGGCCCTGCCTTAGAAACAGCAG  200

seq1  AATGTCCTGCTTCTCTGGAACCATACCAAAGGTTGACCCCACACACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTGCTTCTCTGGAACCATACCAAAGGTTGACCCCACACACACAT  250

seq1  CCACCTACACACATGCACAGAAAAACCCTCAGAGTCTAATTTTAAGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACACACATGCACAGAAAAACCCTCAGAGTCTAATTTTAAGTTTT  300

seq1  TGTCAAGGACTGAGAGAGTAAAATGGGTTGTTAACTGCAGAAGAAATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGGACTGAGAGAGTAAAATGGGTTGTTAACTGCAGAAGAAATGGG  350

seq1  ATCCACACATTTGCTTTCTTCTTTTTCTTGGAGGGGAGACAGGTTCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACATTTGCTTTCTTCTTTTTCTTGGAGGGGAGACAGGTTCTCAT  400

seq1  GAAGCCTACGCTGACTTTGAATTC  424
      ||||||||||||||||||||||||
seq2  GAAGCCTACGCTGACTTTGAATTC  424