BAC Information

Click to search

BAC

Clone NameB6Ng01-146A05
Chromosome8 (Build37)
Map Location 39,910,714 - 39,911,790
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146A05.bB6Ng01-146A05.g
ACCDH943264DH943265
length1,065896
definitionDH943264|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A05, 5' end.DH943265|Mus musculus domesticus DNA, BAC clone: B6Ng01-146A05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacataaataatttaagaatagcatattcctaaaaggattttata
aggcaggctgctcccagggaaagttgaaaatacagcatatgtataacaag
atttgggaagaagagggttgtttatatgctcaaattgagctacatatttc
cagctgccaatgccctgataatcagaaacagcaaatatgtaaatgttttc
aaatatctaaagatcagaatatttgaaaagtaacagatctaggctctgaa
agttgagcacaacttaactattactttaagtggaaaagtctaaataccaa
ccaataaaaaggaagtgtttttacttgtcattattgaatattctccaaat
tctctctccccccccccgtgtatgtctgtgtgtctgtgtgtatctgtgtg
tgtctgtgtgtgtctgtacgtgtctgtgcgtctgtctgggtctggatttt
aaacctatgatttaatgtgagcacattatttctggataagttgagactga
gaagcatacaaacacctaacggtagaacaacttgaagaaaacctggctaa
actacaaataatccatatcacagaagaattggaggtgaatatgaacagaa
gacaccaaacaattttgcccaacgtgatctcatgtaatttatcatcgtgc
ttatgaataggctacatcacagacttctgctactctgtggaccactgtgt
tccatcacatagcctgctgtcctggatattctcagactcaagtcatcccc
cagtcttttctctgctttccacttgacacagctgttttaattcccctgcc
tcaaagtgccatgaggtagtaagttctgtaatgggctcaaacagcctgcc
aatctacttttttttctcagtgtagccttgctagtctggagtaggctatg
gagagactacctccgcctcccaaatgctaggattaaagggtgagcctccc
tccatgccaggtataggcaagctactctgagggatcatgtacacaacgag
tgcattgttgatggaactgcaagaaataagtcttccctgacctgagaagc
cagatctgcctttcc

gaattcaaacacaggagtctgtaagggccaaatctattcaaaccgccata
gttgatgtcccaatctctccactttgaggtgttgcctggttatggtgaga
aacacttaaaggaatgttcaacatctttggtcattttggaaaggcaaatc
aaaacaatgctgagatttcattacacccatcagtatggctaatatcaaaa
tttcaagctacagctcaggctggcaaggatgtggagcaaggggaacactc
ctccattgctgatgaaagtgcaaacttgtgcaatccctttggaaatcaat
ttatcagtttcttgaaaaaaattgggaatagatctacctcaagacccaga
tataccattcctaggcatatgcccaaaagaagctccactattttacaaag
acacatgctcaactatgttcatagaacctttattcataatagccagaaac
tgtaagaaaatgtggtacatttacacaagtggagtgttagccgttaaaaa
caatgacatcatgcaaatttgtagagaaatggaactagaggtcatcctga
gtgaagtaacccagatccagaatgacaaacacgatatgtactcactagta
agtggatgttagctataaagtaagagacaattatgctatggtccatggat
tcagagagactaagaaacagggaagactggagaggagctcacacaaggat
ctccctagaaggagaaactagaagagacttcaagggtggattggttttgg
attggggtgggaacaggagagatcagaggtagagcaggagaaaatactgg
gagtaacaacatggaatggaatctcagcgtggtttgatttccatttcctt
gaaggttaacgatgtggaatatacttaatgtctttaacaattgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_39910714_39911790
seq2: B6Ng01-146A05.b_48_1112

seq1  GAATTCACATAAATAATTTAAGAATAGCATATTCCTAAAAGGATTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAATAATTTAAGAATAGCATATTCCTAAAAGGATTTTATA  50

seq1  AGGCAGGCTGCTCCCAGGGAAAGTTGAAAATACAGCATATGTATAACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTGCTCCCAGGGAAAGTTGAAAATACAGCATATGTATAACAAG  100

seq1  ATTTGGGAAGAAGAGGGTTGTTTATATGCTCAAATTGAGCTACATATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGAAGAAGAGGGTTGTTTATATGCTCAAATTGAGCTACATATTTC  150

seq1  CAGCTGCCAATGCCCTGATAATCAGAAACAGCAAATATGTAAATGTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCAATGCCCTGATAATCAGAAACAGCAAATATGTAAATGTTTTC  200

seq1  AAATATCTAAAGATCAGAATATTTGAAAAGTAACAGATCTAGGCTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAAGATCAGAATATTTGAAAAGTAACAGATCTAGGCTCTGAA  250

seq1  AGTTGAGCACAACTTAACTATTACTTTAAGTGGAAAAGTCTAAATACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGCACAACTTAACTATTACTTTAAGTGGAAAAGTCTAAATACCAA  300

seq1  CCAATAAAAAGGAAGTGTTTTTACTTGTCATTATTGAATATTCTCCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAAAGGAAGTGTTTTTACTTGTCATTATTGAATATTCTCCAAAT  350

seq1  TCTCTCTCCCCCCCCCCGTGTATGTCTGTGTGTCTGTGTGTATCTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCCCCCCCCCCGTGTATGTCTGTGTGTCTGTGTGTATCTGTGTG  400

seq1  TGTCTGTGTGTGTCTGTACGTGTCTGTGCGTCTGTCTGGGTCTGGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTGTGTCTGTACGTGTCTGTGCGTCTGTCTGGGTCTGGATTTT  450

seq1  AAACCTATGATTTAATGTGAGCACATTATTTCTGGATAAGTTGAGACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATGATTTAATGTGAGCACATTATTTCTGGATAAGTTGAGACTGA  500

seq1  GAAGCATACAAACACCTAACGGTAGAACAACTTGAAGAAAACCTGGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATACAAACACCTAACGGTAGAACAACTTGAAGAAAACCTGGCTAA  550

seq1  ACTACAAATAATCCATATCACAGAAGAATTGGAGGTGAATATGAACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAATAATCCATATCACAGAAGAATTGGAGGTGAATATGAACAGAA  600

seq1  GACACCAAACAATTTTGCCCAACGTGATCTCATGTAATTTATCATCGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAAACAATTTTGCCCAACGTGATCTCATGTAATTTATCATCGTGC  650

seq1  TTATGAATAGGCTACATCACAGACTTCTGCTACTCTGTGGACCACTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAATAGGCTACATCACAGACTTCTGCTACTCTGTGGACCACTGTGT  700

seq1  TCCATCACATAGCCTGCTGTCCTGGATATTCTCAGACTCAAGTCATCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACATAGCCTGCTGTCCTGGATATTCTCAGACTCAAGTCATCCCC  750

seq1  CAGTCTTTTCTCTGCTTTCCACTTGACACAGCTGTTTTAATTCCCCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTTCTCTGCTTTCCACTTGACACAGCTGTTTTAATTCCCCTGCC  800

seq1  TCAAAGTGCCATGAGGTAGTAAGTTCTGTAATGGGCTCAAACAGCCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTGCCATGAGGTAGTAAGTTCTGTAATGGGCTCAAACAGCCTGCC  850

seq1  AATCTACTTTTTTTTTCTCAGTGTAGCCTTGCTAGTCTGGAGTAGGCTAT  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAC-TTTTTTTTCTCAGTGTAGCCTTGCTAGTCTGGAGTAGGCTAT  899

seq1  GGAGAGACCTACCTCCGCCTCCCAAATGCTAGGATTAAAGGCGTGAGCCT  950
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGAGA-CTACCTCCGCCTCCCAAATGCTAGGATTAAAGG-GTGAGCCT  947

seq1  CCCTCCATGCCAGGTTATAGGCAAGCTACTCTTGAGGGATCATGTAACAA  1000
      |||||||||||||| |||||||||||||||| ||||||||||||||   |
seq2  CCCTCCATGCCAGG-TATAGGCAAGCTACTC-TGAGGGATCATGTA--CA  993

seq1  CAACAGAGTGCCAATTGTTTGATGGAACTGCAAGAAATTAAGTCTCCCCT  1050
      |||| ||||||  |||| ||||||||||||||||||| ||||||| ||||
seq2  CAAC-GAGTGC--ATTG-TTGATGGAACTGCAAGAAA-TAAGTCTTCCCT  1038

seq1  GACCCTGAG-AGCCAGATCTGCCTTTCC  1077
      || |||||| ||||||||||||||||||
seq2  GA-CCTGAGAAGCCAGATCTGCCTTTCC  1065


| Home | SequenceCutter | Blast | Download |