BAC Information

Click to search

BAC

Clone NameB6Ng01-146D24
Chromosome8 (Build37)
Map Location 47,890,037 - 48,036,895
singlet/doubletdoublet
Overlap geneIrf2
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3
Downstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146D24.bB6Ng01-146D24.g
ACCDH943442DH943443
length1,1901,146
definitionDH943442|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D24, 5' end.DH943443|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,890,037 - 47,891,221)(48,035,750 - 48,036,895)
sequence
gaattccttggtaaaataattgattcctttcttcagttcctcacttgtaa
gattgaaatcataagtttaactccttaggcaataacaagaaacaaaaatg
agtctcatgtgcacgtgcacagtcagatgttcggtgtgcaggcatgttcg
gtctgcaggcatggtcagagggcaggcatggtcagagggcaggcatggtc
agagggaaggcacggtcagagggaaggcatggtcagagggcaggcatggt
cagagggcaggcatgatcagtgtgcaggcatggtcagaggccaggcctac
ccaccttcctttcacacatgggatttcacaatgagtaggacctttttcct
ggaacattagtttctgcatgtctttgctagattgatcgaagccattgtga
gttgtggtcagaaaggtagagtctagtataaagtttatattgaaattatt
gccaagctggatatctttgcatttctttctactatgtccaagacagtacc
tagacctgagagggattagaacagtatatgcacgtgtgcacacacataca
tgtgcacacacacacacacacacacacacacacacacacactgcaaaact
gaagttacttgtttcctgaagcagtggtttccaatacactagacattcct
ttagcagcatgacaagaagaaatgataaaatgcttactagaagttccagc
cagaggctcgttgtcagtcgaaaggcaagggggacatagaagcatggaac
aatacattgtagagaaaatcttcacctttggccttataatatacgttttt
gttttgttttgttttctgtcaggccatgcaaaattctaaatttcctcctg
gtcagatcattagaattagggacccagtggggcagtgggattgttaaatt
ttattttacttgcattttctttaagttgtgtgtgctgcatatgtacagca
tgctcacggggttcctagtgtgcatgtaataatgggccgtcctcatcagt
aagctctgcacttagattttgagacagtgtctcttcactgaacctggagc
ctactgacggcaagactgagcatgcgccaggagtcttctgttcttaactt
aagcagacttaggatataacagcctgtgcctggatagaacttttgttcca
cttgtggaaggcttaaatcttcaggagagagggaacctca
gaattcaaaccaggacaggggatatgcaaatgggcattccaatccaactt
tatgtttaaagttttcaactctttttacccctttgtgtctttgtgagtgt
ggttcctgggatgtcccccataagtcgcagtttgaatacttggtctccag
ttagttattcggggagaattaggagacatggttttgttactggggcctgg
cctagagatttcaaagactcctgccattgccaccacaggctttatttatt
tatttatgaatatgcacataggccttcagctaggcttgtgacaagctcgt
gacacaacctgtttatgctattcaatgtctgccatggttacctctcctcg
ttccttatgtccaactccctccaagtccagatgaggaattttttttgctc
ctgactccttctgagagttcccctctctttgccagatatcccaccttcta
atccttcttcgtctcattggtcatcagatatttattgacaggcgatgctt
ttactcagtgcagaagagattctcattcctacatacatgctggcaaaaca
ccaaatgcacataaaacaaatttaaaataaaatgtataagggagcacaaa
aaagatcttggatacccatagcagccttgggcaaaagatgctggaggaat
cactggatccagtttcaaggtatattacaaagccatagtaggaaaaaaaa
atacttggcatgcagataaatagaacagaatggagtacaagtacaagccc
atatgactatagccacctcactcatgactaaggagataaaaatatacgct
ggagaagaagacacaaataccgcttgaaaactggatgtcagtgggccaaa
gaacaaaactgggatccccttcttgtcgcctgtataaaagttaactccaa
atggagcgggagccgcatacagaacttcaaatcgattaaagaaagctttg
tagactgcgaaacgtctttcctagctaacccttgacagaagactaaaaca
aaacagaaagcaaactcagagacctaagaagagctgcaaagctagctcag
caggtaagggtgtcttggcgaacaaaccagctggctcgggtggaatccgt
ggggaaccagtgggagagagagaaaccgactctcagtccttacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_47890037_47891221
seq2: B6Ng01-146D24.b_46_1235

seq1  GAATTCCTTGGTAAAATAATTGATTCCTTTCTTCAGTTCCTCACTTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTAAAATAATTGATTCCTTTCTTCAGTTCCTCACTTGTAA  50

seq1  GATTGAAATCATAAGTTTAACTCCTTAGGCAATAACAAGAAACAAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAATCATAAGTTTAACTCCTTAGGCAATAACAAGAAACAAAAATG  100

seq1  AGTCTCATGTGCACGTGCACAGTCAGATGTTCGGTGTGCAGGCATGTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATGTGCACGTGCACAGTCAGATGTTCGGTGTGCAGGCATGTTCG  150

seq1  GTCTGCAGGCATGGTCAGAGGGCAGGCATGGTCAGAGGGCAGGCATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGGCATGGTCAGAGGGCAGGCATGGTCAGAGGGCAGGCATGGTC  200

seq1  AGAGGGAAGGCACGGTCAGAGGGAAGGCATGGTCAGAGGGCAGGCATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGGCACGGTCAGAGGGAAGGCATGGTCAGAGGGCAGGCATGGT  250

seq1  CAGAGGGCAGGCATGATCAGTGTGCAGGCATGGTCAGAGGCCAGGCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGCAGGCATGATCAGTGTGCAGGCATGGTCAGAGGCCAGGCCTAC  300

seq1  CCACCTTCCTTTCACACATGGGATTTCACAATGAGTAGGACCTTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCCTTTCACACATGGGATTTCACAATGAGTAGGACCTTTTTCCT  350

seq1  GGAACATTAGTTTCTGCATGTCTTTGCTAGATTGATCGAAGCCATTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATTAGTTTCTGCATGTCTTTGCTAGATTGATCGAAGCCATTGTGA  400

seq1  GTTGTGGTCAGAAAGGTAGAGTCTAGTATAAAGTTTATATTGAAATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTCAGAAAGGTAGAGTCTAGTATAAAGTTTATATTGAAATTATT  450

seq1  GCCAAGCTGGATATCTTTGCATTTCTTTCTACTATGTCCAAGACAGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTGGATATCTTTGCATTTCTTTCTACTATGTCCAAGACAGTACC  500

seq1  TAGACCTGAGAGGGATTAGAACAGTATATGCACGTGTGCACACACATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTGAGAGGGATTAGAACAGTATATGCACGTGTGCACACACATACA  550

seq1  TGTGCACACACACACACACACACACACACACACACACACACTGCAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACACACACACACACACACACACACACACACACACACTGCAAAACT  600

seq1  GAAGTTACTTGTTTCCTGAAGCAGTGGTTTCCAATACACTAGACATTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACTTGTTTCCTGAAGCAGTGGTTTCCAATACACTAGACATTCCT  650

seq1  TTAGCAGCATGACAAGAAGAAATGATAAAATGCTTACTAGAAGTTCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCATGACAAGAAGAAATGATAAAATGCTTACTAGAAGTTCCAGC  700

seq1  CAGAGGCTCGTTGTCAGTCGAAAGGCAAGGGGGACATAGAAGCATGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTCGTTGTCAGTCGAAAGGCAAGGGGGACATAGAAGCATGGAAC  750

seq1  AATACATTGTAGAGAAAATCTTCACCTTTGGCCTTATAATATACGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTGTAGAGAAAATCTTCACCTTTGGCCTTATAATATACGTTTTT  800

seq1  GTTTTGTTTTGTTTTCTGTCAGGCCATGCAAAATTCTAAATTTCCTCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTCTGTCAGGCCATGCAAAATTCTAAATTTCCTCCTG  850

seq1  GTCAGATCATTAGAATTAGGGACCCAGTGGGGCAGTGGGATTGTTAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATCATTAGAATTAGGGACCCAGTGGGGCAGTGGGATTGTTAAATT  900

seq1  TTATTTTACTTGCATTTTCTTTAAGTTGTGTGTGCTGCATATGTACAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTACTTGCATTTTCTTTAAGTTGTGTGTGCTGCATATGTACAGCA  950

seq1  TGCTCACGGGGTTCCTAGTGTGCATGT-ATAAT-GGCCGTCCTCATCAGT  998
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TGCTCACGGGGTTCCTAGTGTGCATGTAATAATGGGCCGTCCTCATCAGT  1000

seq1  -AGCTCTGCACCTTAGATTTTGAGACAGTGTCTC-TCACTGAACCTGGAG  1046
       ||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  AAGCTCTGCA-CTTAGATTTTGAGACAGTGTCTCTTCACTGAACCTGGAG  1049

seq1  CCTACTGACGGGGCAAGACTGAGCATGCGCCAGGAGTCTTCTGGTCTTAA  1096
      |||||||||  |||||||||||||||||||||||||||||||| ||||||
seq2  CCTACTGAC--GGCAAGACTGAGCATGCGCCAGGAGTCTTCTGTTCTTAA  1097

seq1  CTTTAGCAGGACTAGG--ATTACAGGCTGTG-CTGGATAG-ACTTATG-T  1141
      ||| |||||   ||||  || |||| ||||| |||||||| |||| || |
seq2  CTTAAGCAGACTTAGGATATAACAGCCTGTGCCTGGATAGAACTTTTGTT  1147

seq1  CAACTTGTGAGAAGCTAAAAATCTTCTGAGAAGAGGGAACCTCA  1185
      | ||||||| ||||    |||||||| |   |||||||||||||
seq2  CCACTTGTG-GAAGGCTTAAATCTTCAGGAGAGAGGGAACCTCA  1190

seq1: chr8_48035750_48036895
seq2: B6Ng01-146D24.g_68_1213 (reverse)

seq1  TTTGTAA-GACTGAGAGTCGG-TTCTCTCTCTCCAATGTGATCCCACAGG  48
      ||||||| ||||||||||||| |||||||||||| |   | ||||   ||
seq2  TTTGTAAGGACTGAGAGTCGGTTTCTCTCTCTCCCACTGGTTCCCCACGG  50

seq1  ATCCCACACGAG-CAGCTGGGTTTGTCGCC-AGACACCCTTACCTGCTGA  96
      || |||| |||| ||||||| ||  ||||| |||||||||||||||||||
seq2  ATTCCACCCGAGCCAGCTGGTTTGTTCGCCAAGACACCCTTACCTGCTGA  100

seq1  GCTAGCTTTGCCAGCTCTCTTTGGGTTCTCTGAGTTTGCTGTCTGTTTTG  146
      |||||||||| |||||||  || || |||||||||||||| |||||||||
seq2  GCTAGCTTTG-CAGCTCTTCTTAGG-TCTCTGAGTTTGCTTTCTGTTTTG  148

seq1  TTTTAGTCTTCTGTCAAGGGTTTAGCTAGGAAAGACGTTCTCGCAGTCTA  196
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  TTTTAGTCTTCTGTCAAGGG-TTAGCTAGGAAAGACGTT-TCGCAGTCTA  196

seq1  CACAGCTTTCTTTAATCGATTTGAAGTTCTGTATGCGGCTCCCGCTCCAT  246
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTTCTTTAATCGATTTGAAGTTCTGTATGCGGCTCCCGCTCCAT  246

seq1  TTGGAGTTAACTTTTATACAGGCGACAAGAAGGGGAT-CCAGTTTTGTTC  295
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGGAGTTAACTTTTATACAGGCGACAAGAAGGGGATCCCAGTTTTGTTC  296

seq1  TTTGGCCCACTGACATCCAGTTTTCAAGCGGTATTTGTTGTCTTCTTCTC  345
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTGGCCCACTGACATCCAGTTTTCAAGCGGTATTTG-TGTCTTCTTCTC  345

seq1  CAGCGTATATTTTTATCTCCTTAGTCATGAGTGAGGTGGCTATAGTCATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTATATTTTTATCTCCTTAGTCATGAGTGAGGTGGCTATAGTCATA  395

seq1  TGGGCTTGTACTTGTACTCCATTCTGTTCTATTTATCTGCATGCCAAGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGTACTTGTACTCCATTCTGTTCTATTTATCTGCATGCCAAGTA  445

seq1  TTTTTTTTTCCTACTATGGCTTTGTAATATACCTTGAAACTGGATCCAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTACTATGGCTTTGTAATATACCTTGAAACTGGATCCAGT  495

seq1  GATTCCTCCAGCATCTTTTGCCCAAGGCTGCTATGGGTATCCAAGATCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCCAGCATCTTTTGCCCAAGGCTGCTATGGGTATCCAAGATCTT  545

seq1  TTTTGTGCTCCCTTATACATTTTATTTTAAATTTGTTTTATGTGCATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCTCCCTTATACATTTTATTTTAAATTTGTTTTATGTGCATTTG  595

seq1  GTGTTTTGCCAGCATGTATGTAGGAATGAGAATCTCTTCTGCACTGAGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGCCAGCATGTATGTAGGAATGAGAATCTCTTCTGCACTGAGTA  645

seq1  AAAGCATCGCCTGTCAATAAATATCTGATGACCAATGAGACGAAGAAGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCGCCTGTCAATAAATATCTGATGACCAATGAGACGAAGAAGGA  695

seq1  TTAGAAGGTGGGATATCTGGCAAAGAGAGGGGAACTCTCAGAAGGAGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTGGGATATCTGGCAAAGAGAGGGGAACTCTCAGAAGGAGTCA  745

seq1  GGAGCAAAAAAAATTCCTCATCTGGACTTGGAGGGAGTTGGACATAAGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAAAAAAATTCCTCATCTGGACTTGGAGGGAGTTGGACATAAGGA  795

seq1  ACGAGGAGAGGTAACCATGGCAGACATTGAATAGCATAAACAGGTTGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGAGAGGTAACCATGGCAGACATTGAATAGCATAAACAGGTTGTGT  845

seq1  CACGAGCTTGTCACAAGCCTAGCTGAAGGCCTATGTGCATATTCATAAAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGCTTGTCACAAGCCTAGCTGAAGGCCTATGTGCATATTCATAAAT  895

seq1  AAATAAATAAAGCCTGTGGTGGCAATGGCAGGAGTCTTTGAAATCTCTAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAGCCTGTGGTGGCAATGGCAGGAGTCTTTGAAATCTCTAG  945

seq1  GCCAGGCCCCAGTAACAAAACCATGTCTCCTAATTCTCCCCGAATAACTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCCCAGTAACAAAACCATGTCTCCTAATTCTCCCCGAATAACTA  995

seq1  ACTGGAGACCAAGTATTCAAACTGCGACTTATGGGGGACATCCCAGGAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGACCAAGTATTCAAACTGCGACTTATGGGGGACATCCCAGGAAC  1045

seq1  CACACTCACAAAGACACAAAGGGGTAAAAAGAGTTGAAAACTTTAAACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCACAAAGACACAAAGGGGTAAAAAGAGTTGAAAACTTTAAACAT  1095

seq1  AAAGTTGGATTGGAATGCCCATTTGCATATCCCCTGTCCTGGTTTGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGATTGGAATGCCCATTTGCATATCCCCTGTCCTGGTTTGAATT  1145

seq1  C  1146
      |
seq2  C  1146