BAC Information

Click to search

BAC

Clone NameB6Ng01-146K02
Chromosome17 (Build37)8 (Build37)
Map Location 47,310,633 - 47,311,17682,106,306 - 82,107,267
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePolh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146K02.bB6Ng01-146K02.g
ACCDH943720DH943721
length996926
definitionDH943720|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K02, 5' end.DH943721|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,310,633 - 47,311,176)(82,106,306 - 82,107,267)
sequence
gaattctctactattacatggactgtattttatttttgaatctactttta
ttttacacaattatggagcttgttattgatatgaaaaggaattcaaaaat
aaaaaactcaaataaacccacctgtgaatgtaccctgtgacccaaatagg
aattattttgagagtcttactcacatgcaagtgccaaaaggaccttaaat
actgataaagtcaccttgctaaggatggaggcccacacctgctcccccaa
cccttgcggaaaggccaatctctgtgaatttagcgccggcaagcctccct
tacacgaggacttccacgaccaaccaatctattacaccttgtctcaaaaa
accaaaacaaacgagccaccgtaacagaaatatgttgttctcctgattga
aatccttattaggatataatctaaggacagatataacttggctggggtgg
gggggggagactatatatgccaccgcagacatgtggagggcagggagcag
ctttctgtacacgttctctttccactttgttgagtcaggatctcaacttg
tccctgctactgcgtttattactctaggctagctggccttgagagctttc
agcaatccgtctgcctctgcctcccatctctcagtaggaacactgggact
acacaagttgaccaccacatctagccattttatgtaggtgatggggacca
aactcctgttgtcaggcttataggcaaagcactttttaaaaaagatttat
ttatttattatatttatatgagtacactgtagctgtcttcagacacacca
gaagagggcatcagattctgttacatatgggttgtaacccccaatgtggt
gctggggaattgaactcatgacctctggaagtagcaatcaaaactccttc
atcactgagctatctttccagccctgccaaacacttttaccccctgagca
attcttcaaacttttgttcctcacatgcgtctgacctccaggaaaa
gaattccatccccctactctaaatttggcttctaatcaaggatctgctga
cagataggatgacctcacctgtgaaggctcaaggattgaacaaatgtaaa
cacatcaaagtttccaagtgcgccgttgggaggtcccacgcccaaatata
agagtagaggtgattctaaagcttaggaatctaacgaaatctttcattac
agtatgaaaggattccatgtgaaatgctatctctaaagctggttgataca
atttttactataattgtgactgaaaggtttaagttgatacatgaataaaa
tttcaggattatggaacaaagagaacccaaaaggggaaaaaattgcatca
gacagaagactgtatacaataaaagtatgtaaaaaggaaacataaaacag
atgaaaaattttaagtgaaaatattaacacttaaatataaatgtattaga
tttgaattctgacatagtagaagaaacaatcgatgatttgaattatccta
acaaacaatactccagacaatttcctgaaaggaatactaatggctcaggc
tctaagatcaacaactgatcaatgggaccccatgaaactgatgcgcttct
gaaaggcaaaggacactggccataggacaaaatgtctgcctacacattgc
caaagaatcttcaccaaccctacatctgacagagcgataacatccaaaat
tacaaagactcgtagttatatgccaacaacaaataacctacttaaaatgg
ggtacaaagtaaacgagagttctcactgaggatctgctgtccagagctct
aataaatgttcaagtccttatatcaggaaatgcactcaaactactctgga
gattcatcttctccatcaaatggctagatcatactcagaatgacgcctgc
tgggaggatgtggagcacgggagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_47310633_47311176
seq2: B6Ng01-146K02.b_494_1036 (reverse)

seq1  TTTTCCTGGA-GTCAGAGAGCATGTGAGAGACCAAAAGTTTGGAGAAATT  49
      |||||||||| ||||||  ||||||||| || |||||||||| || ||||
seq2  TTTTCCTGGAGGTCAGA-CGCATGTGAG-GAACAAAAGTTTGAAG-AATT  47

seq1  GCTCAGGGGGTAAAAGTGCTTGGCCAGGGCTGGAAAGATGGCTCAGTGAT  99
      |||||||||||||||||| |||| ||||||||||||||| ||||||||||
seq2  GCTCAGGGGGTAAAAGTGTTTGG-CAGGGCTGGAAAGATAGCTCAGTGAT  96

seq1  GAA-GAGTACTGATTGCT-CTTCCAGAGGTCATGAGTTCAATT-CCCAGC  146
      ||| ||||  |||||||| |||||||||||||||||||||||| ||||||
seq2  GAAGGAGTTTTGATTGCTACTTCCAGAGGTCATGAGTTCAATTCCCCAGC  146

seq1  AACCACATGGTGGCTCACAA-CCATATGTAACAGAATCTGATGCCCTCTT  195
       ||||||| | || | |||| |||||||||||||||||||||||||||||
seq2  -ACCACATTGGGGGTTACAACCCATATGTAACAGAATCTGATGCCCTCTT  195

seq1  CTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATAAATATAATAAATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGACAGCTACAGTGTACTCATATAAATATAATAAATA  245

seq1  AATAAATCTTTTTTTAAAAAGTGCTTTGCCTATAAGCCTGACAACAGGAG  295
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATC-TTTTTTAAAAAGTGCTTTGCCTATAAGCCTGACAACAGGAG  294

seq1  TTTGGTCCCCATCACCTACATAAAATGGCTAGATGTGGTGGTCAACTTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCCCCATCACCTACATAAAATGGCTAGATGTGGTGGTCAACTTGT  344

seq1  GTAGTCCCAGTGTTCCTACTGAGAGATGGGAGGCAGAGGCAGACGGATTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCCAGTGTTCCTACTGAGAGATGGGAGGCAGAGGCAGACGGATTG  394

seq1  CTGAAAGCTCTCAAGGCCAGCTAGCCTAGAGTAATAAACGCAGTAGCAGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCTCTCAAGGCCAGCTAGCCTAGAGTAATAAACGCAGTAGCAGG  444

seq1  GACAAGTTGAGATCCTGACTCAACAAAGTGGAAAGAGAACGTGTACAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTGAGATCCTGACTCAACAAAGTGGAAAGAGAACGTGTACAGAA  494

seq1  AGCTGCTCCCTGCCCTCCACATGTCTGCGGTGGCATATATAGTCTCCCC  544
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCCCTGCCCTCCACATGTCTGCGGTGGCATATATAGTCTCCCC  543

seq1: chr8_82106306_82107267
seq2: B6Ng01-146K02.g_67_992 (reverse)

seq1  ATGCTCCCCTTGCTCCACATCCTCCCCAGCATGTGCTGTCAATTTCTGGA  50
      ||||| ||| ||||||||||||| |||||||   |  ||||  |||| ||
seq2  ATGCT-CCCGTGCTCCACATCCT-CCCAGCA---GGCGTCA--TTCT-GA  42

seq1  GCTCTTGATCTTAGCCATTCTGATGGGCGTATGATGGAATCT-CAGAGTT  99
      |    ||||| |||||||| ||||||    | ||| |||||| |||||| 
seq2  G--TATGATC-TAGCCATT-TGATGG--AGAAGAT-GAATCTCCAGAGTA  85

seq1  GTTTTGACTTGCATTTCCCTGATTACTAAGGACTTTGAACATTTCTTTAA  149
      | |||||  ||||||| ||||||   ||||||| |||||||||| ||  |
seq2  G-TTTGA-GTGCATTT-CCTGAT--ATAAGGAC-TTGAACATTTATTAGA  129

seq1  GTACCTCTTGGCCAGTAGATTCCTCAGTTGAGAACTCTCTGTTTACTTCT  199
      |   ||| ||| ||| ||| ||||||| ||||||||||| |||||||| |
seq2  G---CTC-TGGACAGCAGA-TCCTCAG-TGAGAACTCTC-GTTTACTT-T  171

seq1  GTACCCCCATTTTTAATTGGGTTATTTGGTTGTTGGCATCTAACTTCTGA  249
      |||||||   |||||| | |||||||| ||||||||||| ||||| | ||
seq2  GTACCCC--ATTTTAAGTAGGTTATTT-GTTGTTGGCATATAACTAC-GA  217

seq1  GTTCTTTGTAAATTTTGGATGTTATCCCTCTGTCAGATGTAGGGTTGGTG  299
      | ||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  G-TCTTTGT-AATTTTGGATGTTATCGCTCTGTCAGATGTAGGGTTGGTG  265

seq1  AAGATTCTTTGCCAATCTGTAGGCTGACATTTTGTCCTATTGCCAGTGTC  349
      ||||||||||| |||| ||||||| ||||||||||||||| |||||||||
seq2  AAGATTCTTTGGCAATGTGTAGGCAGACATTTTGTCCTATGGCCAGTGTC  315

seq1  CTTTGCCTTACAGAAGCTTTTCAGTTTCATGGGGTCCCATTTATCAGTTG  399
      ||||||||| |||||||   ||||||||||||||||||||| ||||||||
seq2  CTTTGCCTTTCAGAAGCGCATCAGTTTCATGGGGTCCCATTGATCAGTTG  365

seq1  TTGATCTTAGAGCCTGAGCCATTAGTATTCCTTTCAGGAAATTGTCTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTAGAGCCTGAGCCATTAGTATTCCTTTCAGGAAATTGTCTGGA  415

seq1  GTATTCTTTTTTATGATAATTCAAATCATTGATTGTCTCTTCTACTATGT  499
      ||||| ||| ||| ||||||||||||||| |||||| |||||||||||||
seq2  GTATTGTTTGTTAGGATAATTCAAATCATCGATTGTTTCTTCTACTATGT  465

seq1  CAGAATTCAAATCTAATACATTTATATTTAAGTGTTAATATTTTCACTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTCAAATCTAATACATTTATATTTAAGTGTTAATATTTTCACTTA  515

seq1  AAATTTCTCATCTGTTTTATGTTTCCTTTTTACATACTTTTATTCTATAC  599
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATTTTTCATCTGTTTTATGTTTCCTTTTTACATACTTTTATTGTATAC  565

seq1  AGTCTTCTCTCTGATGCTTTTTTTTCCCCTTTTGGGTTCTCTTTGTTCCA  649
      |||||||| ||||||||  |||||||||||||||||||||||||||||||
seq2  AGTCTTCTGTCTGATGCAATTTTTTCCCCTTTTGGGTTCTCTTTGTTCCA  615

seq1  TAATCCTGAAATTTTATTCATGTATCAACTTAAACCTTTCAGTCACAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGAAATTTTATTCATGTATCAACTTAAACCTTTCAGTCACAATT  665

seq1  ATAGTAAAAATCGTATCAACCAGCTTCAGAGATAGCACTTCACATGGAAT  749
      ||||||||||| |||||||||||||| |||||||||| ||||||||||||
seq2  ATAGTAAAAATTGTATCAACCAGCTTTAGAGATAGCATTTCACATGGAAT  715

seq1  CCTTTCATATTTTAATGACTGATTTTGTTAGATTCCTAAGCTTTAGAATC  799
      ||||||||| | ||||||  ||||| ||||||||||||||||||||||||
seq2  CCTTTCATACTGTAATGAAAGATTTCGTTAGATTCCTAAGCTTTAGAATC  765

seq1  ACCTCTACTCTTATATTTGGGCGTGTGACCTTACACTGGTGCACTTGGAA  849
      ||||||||||||||||||||||||| |||||  ||  || ||||||||||
seq2  ACCTCTACTCTTATATTTGGGCGTGGGACCTCCCAACGGCGCACTTGGAA  815

seq1  ACTTTTGATGTGTTTCTTTCTGTTCCTTCCTTGAGCCTTCACTGGTGAGG  899
      || ||||||||||||   | |||||  ||||||||||||||| |||||||
seq2  AC-TTTGATGTGTTTACATTTGTTCAATCCTTGAGCCTTCACAGGTGAGG  864

seq1  TCATCCTTGTCTGTCAGCAGATCCTTGATTAGAAGCCAAATCTAGAGTAG  949
      |||||| | |||||||||||||||||||||||||||||||| ||||||||
seq2  TCATCC-TATCTGTCAGCAGATCCTTGATTAGAAGCCAAATTTAGAGTAG  913

seq1  TGGGTTGGAATTC  962
       ||| ||||||||
seq2  GGGGATGGAATTC  926