BAC Information

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BAC

Clone NameB6Ng01-146P09
Chromosome8 (Build37)
Map Location 13,531,346 - 13,687,756
singlet/doubletdoublet
Overlap geneLOC434282, 1700029H14Rik, Rasa3
Upstream gene1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6
Downstream gene4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146P09.bB6Ng01-146P09.g
ACCDH943969DH943970
length6561,050
definitionDH943969|Mus musculus domesticus DNA, BAC clone: B6Ng01-146P09, 5' end.DH943970|Mus musculus domesticus DNA, BAC clone: B6Ng01-146P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,687,101 - 13,687,756)(13,531,346 - 13,532,399)
sequence
gaattcccaacaacctaattatcgtctctcatgagcatgaaccttcaaca
agccgggggttcacagtcaagtcttgaaatcactgttctaaaattaaaca
aaccatgagctagagagatgatggctcagcagttaagagcacttggctgt
tgtttgctgagtgtacctgggttcgattctcagtacctaagtggcagctg
tgactgtctgtaactccagttctaggggatctggtgccctcttctggcct
ctttgtgcacctcaagcaaatagtgcacacacatgtaggcaaaacactca
taaaattaaaaaaacatatatacttttaaaattaaatacagcagatttcc
ctactgaaactagactaggctgtaaaacactagacggtcggagttactca
gttcaacttctgagcgcactgggctgtggcttcactatacatctgccttg
tggtccttgagtattttgagtcattctggaatggaaacaaccggctcctt
tcatcccacggctgggttaggagactggtgaactcacttctgtggggcaa
ggtctcaccgagaagactgtgacttagtgctcaagtctatggcttcacaa
caccctgtgatcagaaagtcctgggagacagagatggggatggggatggg
agggac
gaattcctaacatattgtccaagcagacctgaaatgtcctggcctctatc
taaagatgcccatgtctgagggctcagtgtctctggatgttcctaaagct
tgcattcctcttggattcagtggtgctggggttcaggatgctatttattc
tcaaagtagaagccaccaaggtctacctcaaaggagacctcaaaggtggc
tgtggttgtaagttttgacaacaggctgtcaccgtgaggatgatcatgtc
ccccagaagcaatgagggcataccagttaaccaggtggcagtgtcagaag
cagagagggtcctgtgcattggcgtctgggagaagctggttacagaccag
aaggaaggatgatcgtgagtgtccagggctaggaatggatgacttcatcc
ctgctggttggggtactggggaacgagggctgcagcattcacgtgctcat
gcatacatttatctaacatctctaagatgtttctgcacagttgacaggct
ccctggatagagacacagatgtggttagactccaggtttcctctggtcct
tctcagaggcaaactcaactcctggcttaccctgggctccttagcctggt
ctagacggctgagataaatgaaccacagcatactccctctttgtctggct
tcttcgcttggcgtcatgcccatgaaagctctcagtggtccctggaaagc
tttccagtgggtggagatgacattttcctctccccagtttgtcgactctt
cagtgagacaagatgtggctttgaatccatggagatgggtgtgagagaaa
cgagtagatggaataggtacctgcctcactggggaatcctccagctgctg
tacaagccgctcctgcagcctttaaagttctggccagttacccctgcttt
cattcttcctgcacgttatacaaagagaatggagttcgcatgcctagcag
actatatctcaggtccccactggttcctaagtttaacacatctaagttag
tgccactgtttctcagagcccatgcccccttggtgatgaatctcttgctg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13687101_13687756
seq2: B6Ng01-146P09.b_46_701 (reverse)

seq1  GTCCCTCCCATCCCCATCCCCATCTCTGTCTCCCAGGACTTTCTGATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCCATCCCCATCCCCATCTCTGTCTCCCAGGACTTTCTGATCAC  50

seq1  AGGGTGTTGTGAAGCCATAGACTTGAGCACTAAGTCACAGTCTTCTCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTGTGAAGCCATAGACTTGAGCACTAAGTCACAGTCTTCTCGGT  100

seq1  GAGACCTTGCCCCACAGAAGTGAGTTCACCAGTCTCCTAACCCAGCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTTGCCCCACAGAAGTGAGTTCACCAGTCTCCTAACCCAGCCGTG  150

seq1  GGATGAAAGGAGCCGGTTGTTTCCATTCCAGAATGACTCAAAATACTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAAGGAGCCGGTTGTTTCCATTCCAGAATGACTCAAAATACTCAA  200

seq1  GGACCACAAGGCAGATGTATAGTGAAGCCACAGCCCAGTGCGCTCAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACAAGGCAGATGTATAGTGAAGCCACAGCCCAGTGCGCTCAGAAG  250

seq1  TTGAACTGAGTAACTCCGACCGTCTAGTGTTTTACAGCCTAGTCTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGAGTAACTCCGACCGTCTAGTGTTTTACAGCCTAGTCTAGTTT  300

seq1  CAGTAGGGAAATCTGCTGTATTTAATTTTAAAAGTATATATGTTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGAAATCTGCTGTATTTAATTTTAAAAGTATATATGTTTTTTTA  350

seq1  ATTTTATGAGTGTTTTGCCTACATGTGTGTGCACTATTTGCTTGAGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGAGTGTTTTGCCTACATGTGTGTGCACTATTTGCTTGAGGTGC  400

seq1  ACAAAGAGGCCAGAAGAGGGCACCAGATCCCCTAGAACTGGAGTTACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGGCCAGAAGAGGGCACCAGATCCCCTAGAACTGGAGTTACAGA  450

seq1  CAGTCACAGCTGCCACTTAGGTACTGAGAATCGAACCCAGGTACACTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACAGCTGCCACTTAGGTACTGAGAATCGAACCCAGGTACACTCAG  500

seq1  CAAACAACAGCCAAGTGCTCTTAACTGCTGAGCCATCATCTCTCTAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAGCCAAGTGCTCTTAACTGCTGAGCCATCATCTCTCTAGCTC  550

seq1  ATGGTTTGTTTAATTTTAGAACAGTGATTTCAAGACTTGACTGTGAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGTTTAATTTTAGAACAGTGATTTCAAGACTTGACTGTGAACCC  600

seq1  CCGGCTTGTTGAAGGTTCATGCTCATGAGAGACGATAATTAGGTTGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTTGTTGAAGGTTCATGCTCATGAGAGACGATAATTAGGTTGTTGG  650

seq1  GAATTC  656
      ||||||
seq2  GAATTC  656

seq1: chr8_13531346_13532399
seq2: B6Ng01-146P09.g_70_1119

seq1  GAATTCCTAACATATTGTCCAAGCAGACCTGAAATGTCCTGGCCTCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACATATTGTCCAAGCAGACCTGAAATGTCCTGGCCTCTATC  50

seq1  TAAAGATGCCCATGTCTGAGGGCTCAGTGTCTCTGGATGTTCCTAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGCCCATGTCTGAGGGCTCAGTGTCTCTGGATGTTCCTAAAGCT  100

seq1  TGCATTCCTCTTGGATTCAGTGGTGCTGGGGTTCAGGATGCTATTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCTCTTGGATTCAGTGGTGCTGGGGTTCAGGATGCTATTTATTC  150

seq1  TCAAAGTAGAAGCCACCAAGGTCTACCTCAAAGGAGACCTCAAAGGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTAGAAGCCACCAAGGTCTACCTCAAAGGAGACCTCAAAGGTGGC  200

seq1  TGTGGTTGTAAGTTTTGACAACAGGCTGTCACCGTGAGGATGATCATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTAAGTTTTGACAACAGGCTGTCACCGTGAGGATGATCATGTC  250

seq1  CCCCAGAAGCAATGAGGGCATACCAGTTAACCAGGTGGCAGTGTCAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAGCAATGAGGGCATACCAGTTAACCAGGTGGCAGTGTCAGAAG  300

seq1  CAGAGAGGGTCCTGTGCATTGGCGTCTGGGAGAAGCTGGTTACAGACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGTCCTGTGCATTGGCGTCTGGGAGAAGCTGGTTACAGACCAG  350

seq1  AAGGAAGGATGATCGTGAGTGTCCAGGGCTAGGAATGGATGACTTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGATGATCGTGAGTGTCCAGGGCTAGGAATGGATGACTTCATCC  400

seq1  CTGCTGGTTGGGGTACTGGGGAACGAGGGCTGCAGCATTCACGTGCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTTGGGGTACTGGGGAACGAGGGCTGCAGCATTCACGTGCTCAT  450

seq1  GCATACATTTATCTAACATCTCTAAGATGTTTCTGCACAGTTGACAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACATTTATCTAACATCTCTAAGATGTTTCTGCACAGTTGACAGGCT  500

seq1  CCCTGGATAGAGACACAGATGTGGTTAGACTCCAGGTTTCCTCTGGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATAGAGACACAGATGTGGTTAGACTCCAGGTTTCCTCTGGTCCT  550

seq1  TCTCAGAGGCAAACTCAACTCCTGGCTTACCCTGGGCTCCTTAGCCTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGGCAAACTCAACTCCTGGCTTACCCTGGGCTCCTTAGCCTGGT  600

seq1  CTAGACGGCTGAGATAAATGAACCACAGCATACTCCCTCTTTGTCTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACGGCTGAGATAAATGAACCACAGCATACTCCCTCTTTGTCTGGCT  650

seq1  TCTTCGCTTGGCGTCATGCCCATGAAAGCTCTCAGTGGTCCCTGGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGCTTGGCGTCATGCCCATGAAAGCTCTCAGTGGTCCCTGGAAAGC  700

seq1  TTTCCAGTGGGTGGAGATGACATTTTCCTCTCCCCAGTTTGTCGACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTGGGTGGAGATGACATTTTCCTCTCCCCAGTTTGTCGACTCTT  750

seq1  CAGTGAGACAAGATGTGGCTTTGAATCCATGGAGATGGGTGTGAGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGACAAGATGTGGCTTTGAATCCATGGAGATGGGTGTGAGAGAAA  800

seq1  CGAGTAGATGGAATAGGTACCTGCCTCACTGGGGAATCCTCCAGCTGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAGATGGAATAGGTACCTGCCTCACTGGGGAATCCTCCAGCTGCTG  850

seq1  TACAAGCCGCTCCTGCAGCCTTTAAAGTTCTGGCCAGTTACCCCTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCCGCTCCTGCAGCCTTTAAAGTTCTGGCCAGTTACCCCTGCTTT  900

seq1  CATTCTTCCTGCACGTTATACAAAAGAGAATGGGAGTTCGCATGCCTAGC  950
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  CATTCTTCCTGCACGTTATAC-AAAGAGAAT-GGAGTTCGCATGCCTAGC  948

seq1  AGACTATATCTCAGGGTCCCCACTGG-TCCTAAGTTTAAACACATCTAAG  999
      ||||||||||||| |||||||||||| |||||||||| ||||||||||||
seq2  AGACTATATCTCA-GGTCCCCACTGGTTCCTAAGTTT-AACACATCTAAG  996

seq1  -TAGTGCCACTGTTCCTCAGAGCCCATGCCCCC-TGGTGATGATTCTCTG  1047
       ||||||||||||| |||||||||||||||||| ||||||||| |||   
seq2  TTAGTGCCACTGTTTCTCAGAGCCCATGCCCCCTTGGTGATGAATCT---  1043

seq1  CTTGCTG  1054
      |||||||
seq2  CTTGCTG  1050