BAC Information

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BAC

Clone NameB6Ng01-147I07
Chromosome8 (Build37)
Map Location 87,916,760 - 88,038,814
singlet/doubletdoublet
Overlap gene4921524J17Rik, Gpt2
Upstream geneCacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1, Nfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2, Gcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik
Downstream geneDnaja2, Neto2, Itfg1, LOC100040798, Phkb, LOC671665, LOC100040165, Abcc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147I07.bB6Ng01-147I07.g
ACCDH944377DH944378
length6751,051
definitionDH944377|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I07, 5' end.DH944378|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,916,760 - 87,917,433)(88,037,761 - 88,038,814)
sequence
gaattcaattcccagcaaccacagctacaatgtactcatatacataaaat
aaatagataaaaaattttttttggtttttcgagacaggatttctctgtat
agccctggctgtcctggaactcactttgtagaccagactggcctcaaact
cagaaatccacctgtctctgcctcctgagtgctgggattaaaggtgtgtg
ccaccacgcccggcagataagaattcaacctgattcaagtttccaggaga
caggcaaaacaccagatctttgccagaatacagcatgaatatcagagcgc
atgtttactgttcatacttccactagcagtctgggcttttctctatctat
aagtccaaatcttcagcatccctagaaatccattccaaaggcccaagaac
catgcgtcagaacatgttccaaatgcagtcatgtgaggagatttctgaac
gctggtaagaaaactccaagaaaccaagataagagtcttgtgacctcatt
ttcttcaaaatcatgggattgttcttggactttgccttcatgcccctccc
agatgtggtggacaggagtgcgttttacttcaggttattcttacaactgg
cttttgttatttgtttatatgcctctacataaagacgtccttgtttttgc
tgcgtgtggctgtccgtgtgactga
gaattccactgctacacacaacgcacacttgaaaataaagacaaatttat
gcttacccagggcttgggactcagcaatcactgcacatgaagacaccaaa
gagacaaacatgaacagttgagagaataagagaaagtcatatatggcttt
acaggggtcaggttacaccctgtttgaggagacataagacacagctttga
tacaggtccagaaagctggaaggaagtgcctaagggccaaaccagaagat
gggcaaaaggaattccctataaactgacagaaacatctgtgattacactt
cctctctcctataacataccacagatgtcctatgaggacaccccagcagg
agataagaggaatagccctggcccaacctccaggtgtaatgacatacacc
tctaacacaagcatttgctatgctgaagcaggagggttgcaagttcgagg
ccagcctaaggagggcttctaagtgaataagtaaaagagctgtcttatca
gagtccgtagcccagagtcagtgagctcctgggctacggctctcagtgag
atcacagaagatgtgttctaaggtttcatctgatgagcaatggctggagt
tgctgaggccctccaaggacagattctaagaaggaacccaactcagagga
cagcggagctgagaagcaaacacaataatgttgattcaggttactgcttt
atgcccgggctccacagctccaccatacggtctttcagttttgagttgga
ttttcgtcttgaaaccagaagcaccctggcttaacatctcaagtctcttt
ggcatcttttaaccaagctggctatggtatgtggttggaaagtttccatt
tcctatcacccaccctcttttagcagctgactgattttcatgcatttaag
accccagaaagcaaggaagatggttgcccacttaaaagttaatctcatat
gatgactcatgaggcagacatggtgatgcatgactttattcagcacttgg
ggagcagtgaagcaatgtctgtggagttcaaagccagccctggtctgcat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_87916760_87917433
seq2: B6Ng01-147I07.b_46_720

seq1  GAATTCAATTCCCAGCAACCACAGCTACAATGTACTCATATACATAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACAGCTACAATGTACTCATATACATAAAAT  50

seq1  AAATAGATAAAAAATTTTTTTTGGTTTTTCGAGACAGGATTTCTCTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATAAAAAATTTTTTTTGGTTTTTCGAGACAGGATTTCTCTGTAT  100

seq1  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGACTGGCCTCAAACT  150

seq1  CAGAAATCCACCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCACCTGTCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTG  200

seq1  CCACCACGCCCGGCAGATAAGAATTCAACCTGATTCAAGTTTCCAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACGCCCGGCAGATAAGAATTCAACCTGATTCAAGTTTCCAGGAGA  250

seq1  CAGGCAAAACACCAGATCTTTGCCAGAATACAGCATGAATATCAGAGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACACCAGATCTTTGCCAGAATACAGCATGAATATCAGAGCGC  300

seq1  ATGTTTACTGTTCATACTTCCACTAGCAGTCTGGGCTTTTCTCTATCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTACTGTTCATACTTCCACTAGCAGTCTGGGCTTTTCTCTATCTAT  350

seq1  AAGTCCAAATCTTCAGCATCCCTAGAAATCCATTCCAAAGGCCCAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAAATCTTCAGCATCCCTAGAAATCCATTCCAAAGGCCCAAGAAC  400

seq1  CATGCGTCAGAACATGTTCCAAATGCAGTCATGTGAGGAGATTTCTGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGTCAGAACATGTTCCAAATGCAGTCATGTGAGGAGATTTCTGAAC  450

seq1  GCTGGTAAGAAAACTCCAAGAAACCAAGATAAGAGTCTTGTGACCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAGAAAACTCCAAGAAACCAAGATAAGAGTCTTGTGACCTCATT  500

seq1  TTCTTCAAAATCATGGGATTGTTCTTGGACTTTGCCTTCATGCCCCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAAAATCATGGGATTGTTCTTGGACTTTGCCTTCATGCCCCTCCC  550

seq1  AGATGTGGTGGACAGGAGTGCG-TTTACTTCAGGTTATTCTTACAACTGG  599
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATGTGGTGGACAGGAGTGCGTTTTACTTCAGGTTATTCTTACAACTGG  600

seq1  CTTTTGTTATTTGTTTATATGCCTCTACAGAAAGACGTCCTTGTTTTTGC  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTTGTTATTTGTTTATATGCCTCTACATAAAGACGTCCTTGTTTTTGC  650

seq1  TGCGTGTGGCTGTCCGTGTGACTGA  674
      |||||||||||||||||||||||||
seq2  TGCGTGTGGCTGTCCGTGTGACTGA  675

seq1: chr8_88037761_88038814
seq2: B6Ng01-147I07.g_71_1121 (reverse)

seq1  TATGCAGACCA-GGCTGGCCTTGAACT-CACAGACATCTGCTTCACTGCC  48
      ||||||||||| ||||||| ||||||| ||||||||| ||||||||||| 
seq2  TATGCAGACCAGGGCTGGCTTTGAACTCCACAGACAT-TGCTTCACTGCT  49

seq1  TCCCAAGTGCTGGAACTAAAGTCATGCATCACCATGTCTGGCCTCATGAG  98
       |||||||||||  | ||||||||||||||||||||||| ||||||||||
seq2  CCCCAAGTGCTG--AATAAAGTCATGCATCACCATGTCT-GCCTCATGAG  96

seq1  TCATCCTTATGAGATTAACTTTTAAGTGGGCAACCATCTTTCCTTGCTTT  148
      |||| | ||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAT-CATATGAGATTAACTTTTAAGTGGGCAACCATC-TTCCTTGCTTT  144

seq1  CTGGGGTCTT-AATGCATGGAAATCAGTCAGCTGCTAAAAGAGGGTGGGT  197
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  CTGGGGTCTTAAATGCATGAAAATCAGTCAGCTGCTAAAAGAGGGTGGGT  194

seq1  GATAGGAAATGGAAACTTTCCAACCACATACCATAGCCAGCTTGGTTAAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAAATGGAAACTTTCCAACCACATACCATAGCCAGCTTGGTTAAA  244

seq1  AGATGCCAAAGAGACTTGAGATGTTAAGCCAGGGTGCTTCTGGTTTCAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAAAGAGACTTGAGATGTTAAGCCAGGGTGCTTCTGGTTTCAAG  294

seq1  ACGAAAATCCAACTCAAAACTGAAAGACCGTATGGTGGAGCTGTGGAGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAATCCAACTCAAAACTGAAAGACCGTATGGTGGAGCTGTGGAGCC  344

seq1  CGGGCATAAAGCAGTAACCTGAATCAACATTATTGTGTTTGCTTCTCAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATAAAGCAGTAACCTGAATCAACATTATTGTGTTTGCTTCTCAGC  394

seq1  TCCGCTGTCCTCTGAGTTGGGTTCCTTCTTAGAATCTGTCCTTGGAGGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTGTCCTCTGAGTTGGGTTCCTTCTTAGAATCTGTCCTTGGAGGGC  444

seq1  CTCAGCAACTCCAGCCATTGCTCATCAGATGAAACCTTAGAACACATCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAACTCCAGCCATTGCTCATCAGATGAAACCTTAGAACACATCTT  494

seq1  CTGTGATCTCACTGAGAGCCGTAGCCCAGGAGCTCACTGACTCTGGGCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCTCACTGAGAGCCGTAGCCCAGGAGCTCACTGACTCTGGGCTA  544

seq1  CGGACTCTGATAAGACAGCTCTTTTACTTATTCACTTAGAAGCCCTCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTCTGATAAGACAGCTCTTTTACTTATTCACTTAGAAGCCCTCCTT  594

seq1  AGGCTGGCCTCGAACTTGCAACCCTCCTGCTTCAGCATAGCAAATGCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCGAACTTGCAACCCTCCTGCTTCAGCATAGCAAATGCTTG  644

seq1  TGTTAGAGGTGTATGTCATTACACCTGGAGGTTGGGCCAGGGCTATTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGGTGTATGTCATTACACCTGGAGGTTGGGCCAGGGCTATTCCT  694

seq1  CTTATCTCCTGCTGGGGTGTCCTCATAGGACATCTGTGGTATGTTATAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTCCTGCTGGGGTGTCCTCATAGGACATCTGTGGTATGTTATAGG  744

seq1  AGAGAGGAAGTGTAATCACAGATGTTTCTGTCAGTTTATAGGGAATTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAGTGTAATCACAGATGTTTCTGTCAGTTTATAGGGAATTCCT  794

seq1  TTTGCCCATCTTCTGGTTTGGCCCTTAGGCACTTCCTTCCAGCTTTCTGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCATCTTCTGGTTTGGCCCTTAGGCACTTCCTTCCAGCTTTCTGG  844

seq1  ACCTGTATCAAAGCTGTGTCTTATGTCTCCTCAAACAGGGTGTAACCTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTATCAAAGCTGTGTCTTATGTCTCCTCAAACAGGGTGTAACCTGA  894

seq1  CCCCTGTAAAGCCATATATGACTTTCTCTTATTCTCTCAACTGTTCATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTAAAGCCATATATGACTTTCTCTTATTCTCTCAACTGTTCATGT  944

seq1  TTGTCTCTTTGGTGTCTTCATGTGCAGTGATTGCTGAGTCCCAAGCCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTTTGGTGTCTTCATGTGCAGTGATTGCTGAGTCCCAAGCCCTG  994

seq1  GGTAAGCATAAATTTGTCTTTATTTTCAAGTGTGCGTTGTGTGTAGCAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGCATAAATTTGTCTTTATTTTCAAGTGTGCGTTGTGTGTAGCAGT  1044

seq1  GGAATTC  1054
      |||||||
seq2  GGAATTC  1051